arXiv subjects

Andrey V. Solov'yov

Publications and source records attributed to Andrey V. Solov'yov.

At least 55 records · Page 3Linked to original sources

arXiv2020

Soft landing of metal clusters on graphite: a molecular dynamics study

Structure and stability of 3 nm size Ag$_{887}$, Au$_{887}$ and Ti$_{787}$ clusters deposited on graphite under soft-landing conditions ($\sim 10^{-3}- 10^0$ eV per atom) are studied by means of molecular dynamics simulations. Parameters for the cluster-surface interaction are derived from complementary ab initio calculations. We found that the shape of clusters on the surface is governed by their elemental composition and depends also on the initial cluster structure and landing conditions. At deposition energies below 0.1 eV/atom, the Ag$_{887}$ cluster acquires an ellipsoidal shape, while Au$_{887}$ and Ti$_{787}$ clusters transform into oblate and prolate truncated spheroids, respectively, due to stronger adhesion to graphite. The clusters flatten over the surface and eventually disintegrate as the deposition energy increases. Simulation results reveal that Ag$_{887}$ and Au$_{887}$ fragment at about $0.75 - 1.0$ eV/atom whereas higher energy of about 3 eV/atom is required for the fragmentation of Ti$_{787}$. The contact angle, contact radius and height of the clusters as functions of deposition energy are determined from fitting the positions of cluster surface atoms with a surface equation. The dependence of these parameters on the internal energy of the clusters is also analyzed.

physics.atm-clus↗

arXiv2019

Channeling of electrons and positrons in straight and periodically bent diamond(110) crystals

In this paper we present the results of a systematic numerical analysis of the channeling properties of electrons and positrons in oriented straight and periodically bent diamond(110) crystals. We analyse dependence of the intensity of the radiation emitted on the projectile energy as well as on the bending amplitude. The analysis presented is based on the grounds of accurate numerical simulations of the channeling process. The simulation parameters, such as the crystal orientation, thickness and bending parameters of the crystals as well as the energy of the projectiles, were chosen to match those used in past and ongoing experiments. The peculiarities which appear in the radiation spectra are attributed to the interplay of various radiation mechanisms. The analysis performed can be used to predict and explain future experimental results.

physics.acc-ph↗

arXiv2019

Generalized correction to embedded-atom potentials for modeling equilibrium and non-equilibrium properties of metals

A modification of an embedded-atom method (EAM)-type potential is proposed for a quantitative description of equilibrium and non-equilibrium properties of metal systems within the molecular-dynamics framework. The modification generalizes the previously developed linear correction to EAM-type potentials [Sushko et al., J. Phys.: Condens. Matter \textbf{28}, 145201 (2016)] and asymptotically approaches zero at large interatomic distances. A general procedure for constructing this modification is outlined and its relation to the linear correction is elaborated. To benchmark this procedure, we examine the melting phase transition and several equilibrium properties of nanosystems made of silver, gold, and titanium. The simulations performed with the modified potential predict higher bulk melting temperatures of the metals and agree better with experimental values as compared to the original EAM-type potential. Our results show that the modification works well for metals with both cubic and hexagonal crystalline lattices. The Gupta potential is chosen as an illustrative case study but the modification proposed is general and can be applied to other widely-used potentials of the EAM type.

cond-mat.mes-hall↗

arXiv2019

Reactive molecular dynamics simulations of organometallic compound W(CO)6 fragmentation

Irradiation- and collision-induced fragmentation studies provide information about geometry, electronic properties and interactions between structural units of various molecular systems. Such knowledge brings insights into irradiation-driven chemistry of molecular systems which is exploited in different technological applications. An accurate atomistic-level simulation of irradiation-driven chemistry requires reliable models of molecular fragmentation which can be verified against mass spectrometry experiments. In this work fragmentation of a tungsten hexacarbonyl, W(CO)$_6$, molecule is studied by means of reactive molecular dynamics simulations. The quantitatively correct fragmentation picture including different fragmentation channels is reproduced. We show that distribution of the deposited energy over all degrees of freedom of the parent molecule leads to thermal evaporation of CO groups and the formation of W(CO)$_n^+$ ($n = 0-5$) fragments. Another type of fragments, WC(CO)$_n^+$ ($n = 0-4$), is produced due to cleavage of a C--O bond as a result of the localized energy deposition. Calculated fragment appearance energies are in good agreement with experimental data. These fragmentation mechanisms have a general physical nature and should take place in radiation-induced fragmentation of different molecular and biomolecular systems.

physics.chem-ph↗

arXiv2018

Phenomenon-based prediction of relative biological effectiveness of ion beams by means of the MultiScale Approach

Relative biological effectiveness (RBE) is a key quantity for the description of radiobiological effects induced by charged-particle irradiation in the context of ion-beam cancer therapy. Since RBE is a complex function that depends on different physical, chemical and biological parameters, a fundamental understanding of these effects becomes increasingly important for clinical applications. The phenomenon-based MultiScale Approach to the physics of radiation damage with ions (MSA) provides a tool for a molecular-level understanding of physical and chemical mechanisms of radiation biodamage and allows to quantify macroscopic biological effects caused by ion irradiation. This study reports the first application of the MSA for the analysis of RBE of ion beams. As a case study, we quantify the response of human normal tissue cell lines to carbon-ion irradiation at different values of linear energy transfer. RBE corresponding to different biological endpoints as well as other radiobiological parameters, such as clonogenic cell survival as a function of dose and inactivation cross section, are analyzed and compared with experimental data. Good agreement with an extensive data set emphasizes the predictive power of the MSA. The method is also used to make predictions of RBE at high values of LET where RBE decreases due to the "overkill" effect. In this regime, the dose needed to achieve a given biological effect is deposited by a few ions. The fact that a given number of ions may produce more damage than needed for a given effect leads to a significant (up to 20%) variation in RBE. This effect should be taken into consideration in the analysis of experimental data on irradiation with high-LET ions.

physics.med-ph↗

arXiv2018

Interplay and specific features of radiation mechanisms of electrons and positrons in crystalline undulators

We predict peculiar changes in spectral distributions of radiation emitted by ultra-relativistic positrons and electrons in periodically bent crystals with variation of the bending amplitude. It is shown that the changes, being sensitive to the projectile energy, manifest themselves differently for negatively and positively charged projectiles. We demonstrate that the features observed are due to the interplay of different radiation mechanisms occurring in periodically bent crystals. The observations are important for design, practical realization and channeling experiments with periodically bent crystals as the key element of the novel light sources. The analysis presented is based on the grounds of accurate numerical simulations of the channeling process.

physics.acc-ph↗

arXiv2018

Transport of secondary electrons through coatings of ion-irradiated metallic nanoparticles

The transport of low-energy electrons through the coating of a radiosensitizing metallic nanoparticle under fast ion irradiation is analyzed theoretically and numerically. As a case study, we consider a poly(ethylene glycol)-coated gold nanoparticle of diameter 1.6~nm excited by a carbon ion in the Bragg peak region in water as well as by more energetic carbon ions. The diffusion equation for low-energy electrons emitted from a finite-size spherical source representing the surface of the metal core is solved to obtain the electron number density as a function of radial distance and time. Information on the atomistic structure and composition of the coating is obtained from molecular dynamics simulations performed with the MBN Explorer software package. Two mechanisms of low-energy electron production by the metallic core are considered: the relaxation of plasmon excitations and collective excitations of valence $d$ electrons in individual atoms of gold. Diffusion coefficients and characteristic lifetimes of electrons propagating in gold, water, and poly(ethylene glycol) are obtained from relativistic partial wave analysis and the dielectric formalism, respectively. On this basis, the number of electrons released through the organic coating into the surrounding aqueous medium and the number of hydroxyl radicals produced are evaluated. The largest increase of the radical yield due to low-energy electrons is observed when the nanoparticle is excited by an ion with energy significantly exceeding that in the Bragg peak region. It is also shown that the water content of the coating, especially near the surface of the metal core, is crucial for the production of hydroxyl radicals.

physics.atm-clus↗

arXiv2018

Calculation of survival probabilities for cells exposed to high ion fluences

A methodology of calculations of survival curves with an account for ion paths interference is developed using the multiscale approach to the physics of radiation damage with ions. The method is applied to different targets and shouldered survival curves are obtained. The recipe is designed for both high and low values of linear energy transfer.

physics.med-ph↗

arXiv2017

Classical molecular dynamics simulations of fusion and fragmentation in fullerene-fullerene collisions

We present the results of classical molecular dynamics simulations of collision-induced fusion and fragmentation of C$_{60}$ fullerenes, performed by means of the MBN Explorer software package. The simulations provide information on structural differences of the fused compound depending on kinematics of the collision process. The analysis of fragmentation dynamics at different initial conditions shows that the size distributions of produced molecular fragments are peaked for dimers, which is in agreement with a well-established mechanism of C$_{60}$ fragmentation via preferential C$_2$ emission. Atomic trajectories of the colliding particles are analyzed and different fragmentation patterns are observed and discussed. On the basis of the performed simulations, characteristic time of C$_2$ emission is estimated as a function of collision energy. The results are compared with experimental time-of-flight distributions of molecular fragments and with earlier theoretical studies. Considering the widely explored case study of C$_{60}$--C$_{60}$ collisions, we demonstrate broad capabilities of the MBN Explorer software, which can be utilized for studying collisions of a broad variety of nanoscale and biomolecular systems by means of classical molecular dynamics.

physics.atm-clus↗

arXiv2017

The effect of ion-induced shock waves on the transport of reacting species around energetic ion tracks

The passage of energetic ions through tissue initiates a series of physico-chemical events, which lead to biodamage. The study of this scenario using a multiscale approach brought about the theoretical prediction of shock waves initiated by energy deposited within ion tracks. These waves are being explored in this letter in different aspects. The radial dose that sets their initial conditions is calculated using diffusion equations extended to include the effect of energetic $δ$-electrons. The resulting shock waves are simulated by means of reactive classical molecular dynamics. The simulations predict a characteristic distribution of reactive species which may have a significant contribution to biodamage, and also suggests experimental means to detect the shock waves.

physics.bio-ph↗

arXiv2017

Radial doses around energetic ion tracks and the onset of shock waves on the nanoscale

Energetic ions lose their energy in tissue mainly by ionising its molecules. This produces secondary electrons which transport this energy radially away from the ion path. The ranges of most of these electrons do not exceed a few nanometres, therefore large energy densities (radial doses) are produced within a narrow region around the ion trajectory. Large energy density gradients correspond to large pressure gradients and this brings about shock waves propagating away from the ion path. Previous works have studied these waves by molecular dynamics simulations investigating their damaging effects on DNA molecules. However, these simulations where performed assuming that all energy lost by ions is deposited uniformly in thin cylinders around their path. In the present work the radial dose distributions, calculated by solving the diffusion equation for the low energy electrons and complemented with a semi-empirical inclusion of more energetic $δ$-electrons, are used to set up initial conditions for the shock wave simulation. The effect of these energy distributions vs. stepwise energy distributions in tracks on the strength of shock waves induced by carbon ions both in the Bragg peak region and out of it is studied by molecular dynamics simulations.

physics.bio-ph↗

arXiv2017

Cell survival probability in a spread-out Bragg peak for novel treatment planning

The problem of variable cell survival probability along the spread-out Bragg peak is one of the long standing problems in planning and optimisation of ion-beam therapy. This problem is considered using the multiscale approach to the physics of ion-beam therapy. The physical reasons for this problem are analysed and understood on a quantitative level. A recipe of solution to this problem is suggested using this approach. This recipe can be used in the design of a novel treatment planning and optimisation based on fundamental science.

physics.med-ph↗

arXiv2017

Ion-impact-induced multifragmentation of liquid droplets

An instability of a liquid droplet traversed by an energetic ion is explored. This instability is brought about by the predicted shock wave induced by the ion. An observation of multifragmentation of small droplets traversed by ions with high linear energy transfer is suggested to demonstrate the existence of shock waves. A number of effects are analysed in effort to find the conditions for such an experiment to be signifying. The presence of shock waves crucially affects the scenario of radiation damage with ions since the shock waves significantly contribute to the thermomechanical damage of biomolecules as well as the transport of reactive species. While the scenario has been upheld by analyses of biological experiments, the shock waves have not yet been observed directly, regardless of a number of ideas of experiments to detect them were exchanged at conferences.

physics.med-ph↗

arXiv2017

Channeling and radiation of the 855 MeV electrons enhanced by the re-channeling in a periodically bent diamond crystal

Channeling properties and radiation spectra are studied on the grounds of numerical simulations for the 855 MeV electrons in a periodically bent diamond crystal. The bent crystalline profiles are shown to enhance the re-channeling of the projectiles and to produce distinct lines in the radiation spectra. The results obtained are analyzed and contrasted to the properties of the planar channeling and of the channeling in uniformly bent crystals.

physics.acc-ph↗

arXiv2016

Channeling and Radiation of 855 MeV Electrons and Positrons in Straight and Bent Tungsten (110) Crystals

Planar channeling of 855 MeV electrons and positrons in straight and bent tungsten (110) crystal is simulated by means of the \MBNExplorer software package. The results of simulations for a broad range of bending radii are analyzed in terms of the channel acceptance, dechanneling length, and spectral distribution of the emitted radiation. Comparison of the results with predictions of other theories as well as with the data for (110) oriented diamond, silicon and germanium crystals is carried out.

physics.acc-ph↗

arXiv2016

Photoionization of multishell fullerenes studied by ab initio and model approaches

Photoionization of two buckyonions, C$_{60}$@C$_{240}$ and C$_{20}$@C$_{60}$, is investigated by means of time-dependent density-functional theory (TDDFT). The TDDFT-based photoabsorption spectrum of C$_{60}$@C$_{240}$, calculated in a broad photon energy range, resembles the sum of spectra of the two isolated fullerenes, thus illustrating the absence of strong plasmonic coupling between the fullerenes which was proposed earlier. The calculated spectrum of the smaller buckyonion, C$_{20}$@C$_{60}$, differs significantly from the sum of the cross sections of the individual fullerenes because of strong geometrical distortion of the system. The contribution of collective electron excitations arising in individual fullerenes is evaluated by means of plasmon resonance approximation (PRA). An extension of the PRA formalism is presented, which allows for the study of collective electron excitations in multishell fullerenes under photon impact. An advanced analysis of photoionization of buckyonions, performed using modern computational and analytical approaches, provides valuable information on the response of complex molecular systems to the external electromagnetic field.

physics.atm-clus↗

arXiv2016

Simulation of Channeling and Radiation of 855 MeV Electrons and Positrons in a Small-Amplitude Short-Period Bent Crystal

Channeling and radiation are studied for the relativistic electrons and positrons passing through a Si crystal periodically bent with a small amplitude and a short period. Comprehensive analysis of the channeling process for various bending amplitudes is presented on the grounds of numerical simulations. The features of the channeling are highlighted and elucidated within an analytically developed continuous potential approximation. The radiation spectra are computed and discussed.

physics.acc-ph↗

arXiv2016

Molecular dynamics study of accelerated ion-induced shock waves in biological media

We present a molecular dynamics study of the effects of carbon- and iron-ion induced shock waves in DNA duplexes in liquid water. We use the CHARMM force field implemented within the MBN Explorer simulation package to optimize and equilibrate DNA duplexes in liquid water boxes of different sizes and shapes. The translational and vibrational degrees of freedom of water molecules are excited according to the energy deposited by the ions and the subsequent shock waves in liquid water are simulated. The pressure waves generated are studied and compared with an analytical hydrodynamics model which serves as a benchmark for evaluating the suitability of the simulation boxes. The energy deposition in the DNA backbone bonds is also monitored as an estimation of biological damage, something which lies beyond the possibilities of the analytical model.

physics.bio-ph↗