arXiv subjects

Angela Bonifati

Publications and source records attributed to Angela Bonifati.

At least 19 recordsLinked to original sources

arXiv2026

Toward a Causal Data Management Ecosystem for Decision Making and Agentic AI

Modern AI is no longer a single model but an ecosystem: classical ML predictors, deep and multimodal models, large language models, and agents, each trained and tuned over different data sources and each producing outputs at scale that become inputs to the others. Operating such an ecosystem is fundamentally a data integration problem - the knowledge it depends on is fragmented across dozens of heterogeneous, independently governed sources that must be reconciled and continually maintained. Yet integration alone is not enough. The predictions these systems make are shaped by many interacting factors, and the events, decisions, and variables that drive an outcome are routinely entangled with the ones that merely accompany it; treated as a basis for action, such correlational signals invite confounded decisions. This becomes acute once agents act autonomously: to be trustworthy and reliable, an agent must anticipate the consequences of its actions, not merely extrapolate from what has co-occurred before. Causal reasoning is what closes this gap, distinguishing the drivers of an outcome from its correlates, and enabling prescriptive and counterfactual analysis over the ecosystem's data. We therefore argue that the integrated ecosystem needs an explicit causal layer, and we propose to build it as a shared, persistent, queryable Causal World System (CWS).

cs.DB↗

arXiv2026

Are Large Language Models Suitable for Graph Computation? Progress and Prospects

Large language models (LLMs) have been increasingly explored for graph computation, where tasks require reasoning over structured relationships and algorithmic operations. Yet, it remains unclear when LLMs can reliably support such computation and how they should be incorporated into graph-solving pipelines. Existing surveys at the intersection of LLMs and graphs primarily focus on graph learning, text-attributed graphs, or graph-language modeling. To bridge this gap, we provide a comprehensive review of LLMs for graph computation through a role-based taxonomy. Specifically, we identify two major paradigms: i) LLMs as executors, where models directly solve graph tasks from graph descriptions and instructions; and ii) LLMs as planners, where models formulate problems, decompose reasoning steps, and invoke external tools or agents for execution. Based on this taxonomy, we analyze the strengths and limitations of current methods. Our review indicates that LLMs are promising for simple, small-scale tasks, but remain unreliable for large-scale and exactness-demanding tasks. Finally, we summarize available datasets and suggest four future directions.

cs.CL↗

arXiv2026

Generalized L-Modularity for Community Detection Beyond Simple Temporal Networks

Detecting communities in networks is essential for understanding the mesoscopic organization of complex systems. Interactions in most real-world networks evolve over time and exhibit diverse modalities: instantaneous events, continuous contacts that persist over intervals, and delayed interactions where source and destination are temporally separated, as observed in transportation processes. Additionally, interactions may be directed, weighted, or involve multiple node types. Existing methods for community detection in temporal networks typically handle only limited subsets of these features. When applied to real-world data, they often rely on simplifying transformations, such as aggregating interactions into time windows, projecting multipartite structures onto unipartite graphs, or ignoring edge directions and weights, leading to a loss of information. In this work, we generalize Longitudinal Modularity (L-Modularity) and the LAGO algorithm into a unified framework for dynamic community detection in complex link streams. Experiments on three real-world datasets demonstrate that our approach discovers meaningful communities in temporal networks with diverse interaction types.

cs.SI↗

arXiv2026

Repairing Property Graphs under PG-Constraints

Recent standardization efforts for graph databases lead to standard query languages like GQL and SQL/PGQ, and constraint languages like Property Graph Constraints (PG-Constraints). In this paper, we embark on the study of repairing property graphs under PG-Constraints. We identify a significant subset of PG-Constraints, encoding denial constraints and including recursion as a key feature, while still permitting automata-based structural analyses of errors. We present a comprehensive repair pipeline for these constraints to repair Property Graphs, involving changes in the graph topology and leading to node, edge and, optionally, label deletions. We investigate three algorithmic strategies for the repair procedure, based on Integer Linear Programming (ILP), a naive, and an LP-guided greedy algorithm. Our experiments on various real-world datasets reveal that repairing with label deletions can achieve a 59% reduction in deletions compared to node/edge deletions. Moreover, the LP-guided greedy algorithm offers a runtime advantage of up to 97% compared to the ILP strategy, while matching the same quality.

cs.DB↗

arXiv2026

Continuous Fairness On Data Streams

We study the problem of enforcing continuous group fairness over windows in data streams. We propose a novel fairness model that ensures group fairness at a finer granularity level (referred to as block) within each sliding window. This formulation is particularly useful when the window size is large, making it desirable to enforce fairness at a finer granularity. Within this framework, we address two key challenges: efficiently monitoring whether each sliding window satisfies block-level group fairness, and reordering the current window as effectively as possible when fairness is violated. To enable real-time monitoring, we design sketch-based data structures that maintain attribute distributions with minimal overhead. We also develop optimal, efficient algorithms for the reordering task, supported by rigorous theoretical guarantees. Our evaluation on four real-world streaming scenarios demonstrates the practical effectiveness of our approach. We achieve millisecond-level processing and a throughput of approximately 30,000 queries per second on average, depending on system parameters. The stream reordering algorithm improves block-level group fairness by up to 95% in certain cases, and by 50-60% on average across datasets. A qualitative study further highlights the advantages of block-level fairness compared to window-level fairness.

cs.LG↗

arXiv2025

Discovering Communities in Continuous-Time Temporal Networks by Optimizing L-Modularity

Community detection is a fundamental problem in network analysis, with many applications in various fields. Extending community detection to the temporal setting with exact temporal accuracy, as required by real-world dynamic data, necessitates methods specifically adapted to the temporal nature of interactions. We introduce LAGO, a novel method for uncovering dynamic communities by greedy optimization of Longitudinal Modularity, a specific adaptation of Modularity for continuous-time networks. Unlike prior approaches that rely on time discretization or assume rigid community evolution, LAGO captures the precise moments when nodes enter and exit communities. We evaluate LAGO on synthetic benchmarks and real-world datasets, demonstrating its ability to efficiently uncover temporally and topologically coherent communities.

cs.SI↗

arXiv2025

Graph Repairs with Large Language Models: An Empirical Study

Property graphs are widely used in domains such as healthcare, finance, and social networks, but they often contain errors due to inconsistencies, missing data, or schema violations. Traditional rule-based and heuristic-driven graph repair methods are limited in their adaptability as they need to be tailored for each dataset. On the other hand, interactive human-in-the-loop approaches may become infeasible when dealing with large graphs, as the cost--both in terms of time and effort--of involving users becomes too high. Recent advancements in Large Language Models (LLMs) present new opportunities for automated graph repair by leveraging contextual reasoning and their access to real-world knowledge. We evaluate the effectiveness of six open-source LLMs in repairing property graphs. We assess repair quality, computational cost, and model-specific performance. Our experiments show that LLMs have the potential to detect and correct errors, with varying degrees of accuracy and efficiency. We discuss the strengths, limitations, and challenges of LLM-driven graph repair and outline future research directions for improving scalability and interpretability.

cs.CL↗

arXiv2025

Graphint: Graph-based Time Series Clustering Visualisation Tool

With the exponential growth of time series data across diverse domains, there is a pressing need for effective analysis tools. Time series clustering is important for identifying patterns in these datasets. However, prevailing methods often encounter obstacles in maintaining data relationships and ensuring interpretability. We present Graphint, an innovative system based on the $k$-Graph methodology that addresses these challenges. Graphint integrates a robust time series clustering algorithm with an interactive tool for comparison and interpretation. More precisely, our system allows users to compare results against competing approaches, identify discriminative subsequences within specified datasets, and visualize the critical information utilized by $k$-Graph to generate outputs. Overall, Graphint offers a comprehensive solution for extracting actionable insights from complex temporal datasets.

cs.LG↗

arXiv2025

$k$-Graph: A Graph Embedding for Interpretable Time Series Clustering

Time series clustering poses a significant challenge with diverse applications across domains. A prominent drawback of existing solutions lies in their limited interpretability, often confined to presenting users with centroids. In addressing this gap, our work presents $k$-Graph, an unsupervised method explicitly crafted to augment interpretability in time series clustering. Leveraging a graph representation of time series subsequences, $k$-Graph constructs multiple graph representations based on different subsequence lengths. This feature accommodates variable-length time series without requiring users to predetermine subsequence lengths. Our experimental results reveal that $k$-Graph outperforms current state-of-the-art time series clustering algorithms in accuracy, while providing users with meaningful explanations and interpretations of the clustering outcomes.

cs.LG↗

arXiv2024

What If: Causal Analysis with Graph Databases

Graphs are expressive abstractions representing more effectively relationships in data and enabling data science tasks. They are also a widely adopted paradigm in causal inference focusing on causal directed acyclic graphs. Causal DAGs (Directed Acyclic Graphs) are manually curated by domain experts, but they are never validated, stored and integrated as data artifacts in a graph data management system. In this paper, we delineate our vision to align these two paradigms, namely causal analysis and property graphs, the latter being the cornerstone of modern graph databases. To articulate this vision, a paradigm shift is required leading to rethinking property graph data models with hypernodes and structural equations, graph query semantics and query constructs, and the definition of graph views to account for causality operators. Moreover, several research problems and challenges arise aiming at automatically extracting causal models from the underlying graph observational data, aligning and integrating disparate causal graph models into unified ones along with their maintenance upon the changes in the underlying data. The above vision will allow to make graph databases aware of causal knowledge and pave the way to data-driven personalized decision-making in several scientific fields.

cs.DB↗

arXiv2024

Low-Latency Sliding Window Connectivity

Connectivity queries, which check whether vertices belong to the same connected component, are fundamental in graph computations. Sliding window connectivity processes these queries over sliding windows, facilitating real-time streaming graph analytics. However, existing methods struggle with low-latency processing due to the significant overhead of continuously updating index structures as edges are inserted and deleted. We introduce a novel approach that leverages spanning trees to efficiently process queries. The novelty of this method lies in its ability to maintain spanning trees efficiently as window updates occur. Notably, our approach completely eliminates the need for replacement edge searches, a traditional bottleneck in managing spanning trees during edge deletions. We also present several optimizations to maximize the potential of spanning-tree-based indexes. Our comprehensive experimental evaluation shows that index update latency in spanning trees can be reduced by up to $458\times$ while maintaining query performance, leading to an $8\times$ improvement in throughput. Our approach also significantly outperforms the state-of-the-art in both query processing and index updates. Additionally, our methods use significantly less memory and demonstrate consistent efficiency across various settings.

cs.DB↗

arXiv2024

Longitudinal Modularity, a Modularity for Link Streams

Temporal networks are commonly used to model real-life phenomena. When these phenomena represent interactions and are captured at a fine-grained temporal resolution, they are modeled as link streams. Community detection is an essential network analysis task. Although many methods exist for static networks, and some methods have been developed for temporal networks represented as sequences of snapshots, few works can handle link streams. This article introduces the first adaptation of the well-known Modularity quality function to link streams. Unlike existing methods, it is independent of the time scale of analysis. After introducing the quality function, and its relation to existing static and dynamic definitions of Modularity, we show experimentally its relevance for dynamic community evaluation.

cs.SI↗

arXiv2024

Path-based Algebraic Foundations of Graph Query Languages

Graph databases are gaining momentum thanks to the flexibility and expressiveness of their data models and query languages. A standardization activity driven by the ISO/IEC standardization body is also ongoing and has already conducted to the specification of the first versions of two standard graph query languages, namely SQL/PGQ and GQL, respectively in 2023 and 2024. Apart from the standards, there exists a panoply of concrete graph query languages provided by current graph database systems, each offering different query features. A common limitation of current graph query engines is the absence of an algebraic approach for evaluating path queries. To address this, we introduce an abstract algebra for evaluating path queries, allowing paths to be treated as first-class entities within the query processing pipeline. We demonstrate that our algebra can express a core fragment of path queries defined in GQL and SQL/PGQ, thereby serving as a formal framework for studying both standards and supporting their implementation in current graph database systems. We also show that evaluation trees for path algebra expressions can function as logical plans for evaluating path queries and enable the application of query optimization techniques. Our algebraic framework has the potential to act as a lingua franca for path query evaluation, enabling different implementations to be expressed and compared.

cs.DB↗

arXiv2024

Transforming Property Graphs

In this paper, we study a declarative framework for specifying transformations of property graphs. In order to express such transformations, we leverage queries formulated in the Graph Pattern Calculus (GPC), which is an abstraction of the common core of recent standard graph query languages, GQL and SQL/PGQ. In contrast to previous frameworks targeting graph topology only, we focus on the impact of data values on the transformations--which is crucial in addressing users needs. In particular, we study the complexity of checking if the transformation rules do not specify conflicting values for properties, and we show this is closely related to the satisfiability problem for GPC. We prove that both problems are PSpace-complete. We have implemented our framework in openCypher. We show the flexibility and usability of our framework by leveraging an existing data integration benchmark, adapting it to our needs. We also evaluate the incurred overhead of detecting potential inconsistencies at run-time, and the impact of several optimization tools in a Cypher-based graph database, by providing a comprehensive comparison of different implementation variants. The results of our experimental study show that our framework exhibits large practical benefits for transforming property graphs compared to ad-hoc transformation scripts.

cs.DB↗

arXiv2024

Incremental Sliding Window Connectivity over Streaming Graphs

We study index-based processing for connectivity queries within sliding windows on streaming graphs. These queries, which determine whether two vertices belong to the same connected component, are fundamental operations in real-time graph data processing and demand high throughput and low latency. While indexing methods that leverage data structures for fully dynamic connectivity can facilitate efficient query processing, they encounter significant challenges with deleting expired edges from the window during window updates. We introduce a novel indexing approach that eliminates the need for physically performing edge deletions. This is achieved through a unique bidirectional incremental computation framework, referred to as the BIC model. The BIC model implements two distinct incremental computations to compute connected components within the window, operating along and against the timeline, respectively. These computations are then merged to efficiently compute queries in the window. We propose techniques for optimized index storage, incremental index updates, and efficient query processing to improve BIC effectiveness. Empirically, BIC achieves a 14$\times$ increase in throughput and a reduction in P95 latency by up to 3900$\times$ when compared to state-of-the-art indexes.

cs.DB↗

arXiv2024

Assisted Debate Builder with Large Language Models

We introduce ADBL2, an assisted debate builder tool. It is based on the capability of large language models to generalise and perform relation-based argument mining in a wide-variety of domains. It is the first open-source tool that leverages relation-based mining for (1) the verification of pre-established relations in a debate and (2) the assisted creation of new arguments by means of large language models. ADBL2 is highly modular and can work with any open-source large language models that are used as plugins. As a by-product, we also provide the first fine-tuned Mistral-7B large language model for relation-based argument mining, usable by ADBL2, which outperforms existing approaches for this task with an overall F1-score of 90.59% across all domains.

cs.CL↗

arXiv2023

Indexing Techniques for Graph Reachability Queries

We survey graph reachability indexing techniques for efficient processing of graph reachability queries in two types of popular graph models: plain graphs and edge-labeled graphs. Reachability queries are Boolean in nature, determining whether a directed path exists between a given source and target vertex. They form a core class of navigational queries in graph processing. Reachability indexes are specialized data structures designed to accelerate reachability query processing. Work on this topic goes back four decades -- we include 33 of the proposed techniques. Plain graphs contain only vertices and edges, with reachability queries checking path existence between a source and target vertex. Edge-labeled graphs, in contrast, augment plain graphs by adding edge labels. Reachability queries in edge-labeled graphs incorporate path constraints based on edge labels, assessing both path existence and compliance with path constraints. We categorize techniques in both plain and edge-labeled graphs and discuss the approaches according to this classification, using existing techniques as exemplars. We discuss the main challenges within each class and how these might be addressed in other approaches. We conclude with a discussion of the open research challenges and future research directions, along the lines of integrating reachability indexes into modern graph database management systems. This survey serves as a comprehensive resource for researchers and practitioners interested in the advancements, techniques, and challenges on reachability indexing in graph analytics.

cs.DB↗

arXiv2023

Large Language Models and Knowledge Graphs: Opportunities and Challenges

Large Language Models (LLMs) have taken Knowledge Representation -- and the world -- by storm. This inflection point marks a shift from explicit knowledge representation to a renewed focus on the hybrid representation of both explicit knowledge and parametric knowledge. In this position paper, we will discuss some of the common debate points within the community on LLMs (parametric knowledge) and Knowledge Graphs (explicit knowledge) and speculate on opportunities and visions that the renewed focus brings, as well as related research topics and challenges.

cs.AI↗