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Angela Zhu

Publications and source records attributed to Angela Zhu.

4 recordsLinked to original sources

Prompting is not enough: supervised baselines and leakage control for measuring shared decision-making with LLMs in pediatric encounters

Objectives: To determine whether zero-shot prompting of a large language model (LLM) is sufficient to detect shared decision-making (SDM) behaviors in real clinical encounters, and whether supervised learning adds value under patient-grouped, nested evaluation. Methods: We analyzed 21 audio-recorded outpatient surgical decision encounters (19 unique patients; 7,566 utterance segments; ~6.1 hours) between families of children with multiple long-term conditions and their surgical providers. Trained coders labeled segments for 12 SDM behaviors (human-human macro Cohen's kappa = 0.695). We compared a zero-shot local LLM (Qwen 2.5 32B), a supervised classifier over frozen sentence embeddings, and their logistic stack, under patient-grouped outer folds with inner cross-fitted thresholds and patient-resampled confidence intervals. Results: The zero-shot LLM reached macro kappa = 0.139 (95% CI 0.111-0.164). The supervised classifier reached kappa = 0.227 (0.186-0.262), a paired improvement of 0.088 (0.051-0.119). A logistic stack of the two reached kappa = 0.242 (0.198-0.284). We identified multiple corpus-specific leakage paths, including grouping sibling recordings separately and allowing labels from an outer held-out patient to enter few-shot exemplars used while fitting downstream models. Conclusion: Zero-shot prompting alone is not sufficient to measure SDM behavior as reliably as a small supervised model, and patient-level grouping alone does not prevent leakage when labeled prompt exemplars are precomputed outside the outer evaluation loop. Reported performance is sensitive to the unit of data splitting and to where labeled exemplars enter the pipeline. External validation is needed before these findings generalize beyond this population, model, prompt, and codebook.

cs.CL

Investigating Different Geo Priors for Image Classification

Species distribution models encode spatial patterns of species occurrence making them effective priors for vision-based species classification when location information is available. In this study, we evaluate various SINR (Spatial Implicit Neural Representations) models as a geographical prior for visual classification of species from iNaturalist observations. We explore the impact of different model configurations and adjust how we handle predictions for species not included in Geo Prior training. Our analysis reveals factors that contribute to the effectiveness of these models as Geo Priors, factors that may differ from making accurate range maps.

cs.CV

Feedforward Few-shot Species Range Estimation

Knowing where a particular species can or cannot be found on Earth is crucial for ecological research and conservation efforts. By mapping the spatial ranges of all species, we would obtain deeper insights into how global biodiversity is affected by climate change and habitat loss. However, accurate range estimates are only available for a relatively small proportion of all known species. For the majority of the remaining species, we typically only have a small number of records denoting the spatial locations where they have previously been observed. We outline a new approach for few-shot species range estimation to address the challenge of accurately estimating the range of a species from limited data. During inference, our model takes a set of spatial locations as input, along with optional metadata such as text or an image, and outputs a species encoding that can be used to predict the range of a previously unseen species in a feedforward manner. We evaluate our approach on two challenging benchmarks, where we obtain state-of-the-art range estimation performance, in a fraction of the compute time, compared to recent alternative approaches.

cs.CV

Quantifying different modeling frameworks using topological data analysis: a case study with zebrafish patterns

Mathematical models come in many forms across biological applications. In the case of complex, spatial dynamics and pattern formation, stochastic models also face two main challenges: pattern data is largely qualitative, and model realizations may vary significantly. Together these issues make it difficult to relate models and empirical data -- or even models and models -- limiting how different approaches can be combined to offer new insights into biology. These challenges also raise mathematical questions about how models are related, since alternative approaches to the same problem -- e.g., cellular Potts models; off-lattice, agent-based models; on-lattice, cellular automaton models; and continuum approaches -- treat uncertainty and implement cell behavior in different ways. To help open the door to future work on questions like these, here we adapt methods from topological data analysis and computational geometry to quantitatively relate two different models of the same biological process in a fair, comparable way. To center our work and illustrate concrete challenges, we focus on the example of zebrafish-skin pattern formation, and we relate patterns that arise from agent-based and cellular automaton models.

q-bio.CB