arXiv subjects

Angelos Michaelides

Publications and source records attributed to Angelos Michaelides.

At least 37 records · Page 2Linked to original sources

arXiv2025

CO2 Hydration at the Air-Water Interface: A Surface-Mediated 'In and Out' Mechanism

An understanding of the CO$_2$ + H$_2$O hydration reaction is crucial for modeling the effects of ocean acidification, for enabling novel carbon storage solutions, and as a model process in the geosciences. While the mechanism of this reaction has been investigated extensively in the condensed phase, its mechanism at the air-water interface remains elusive, leaving uncertain the contribution that surface-adsorbed CO$_2$ makes to the overall acidification reaction. In this study, we employ machine-learned potentials trained to various levels of theory to provide a molecular-level understanding of CO$_2$ hydration at the air-water interface. We show that reaction at the interface follows a surface-mediated `In and Out' mechanism: CO$_2$ diffuses into the aqueous surface layer, reacts to form carbonic acid, and is subsequently expelled from solution. We show that this surface layer provides a bulk-like solvation environment, engendering similar modes of reactivity and near-identical free energy profiles for the bulk and interfacial processes. Our study unveils a new, unconventional reaction mechanism that underscores the dynamic nature of the molecular reaction site at the air-water interface. The similarity between bulk and interfacial profiles shows that CO$_2$ hydration is equally as feasible under these two solvation environments and that acidification rates are likely enhanced by this additional surface contribution.

physics.chem-ph↗

arXiv2025

Entropy governs the structure and reactivity of water dissociation under electric fields

The response of water to electric fields is critical to the performance and stability of electrochemical devices, and the selectivity of enzymatic, atmospheric, and organic reactions. A key process in this context is the water (auto)dissociation reaction (WD), which governs acid-base aqueous chemistry and shapes reaction rates and mechanisms. Despite its significance, the thermodynamics of the WD reaction in electrified environments remains poorly understood. Here, we investigate the WD reaction under external electric fields using ab initio molecular dynamics simulations within the framework of the modern theory of polarization. Our results reveal that strong electric fields dramatically enhance the WD reaction, increasing the equilibrium constant by several orders of magnitude. Moreover, we show that the applied field transforms the WD reaction from an entropically hindered process to an entropy-driven one. Analysis shows that this is because the electric field alters the tendency of ions to be structure makers or structure breakers. By highlighting how strong electric fields reshape solvent organization and reactivity, this work opens new avenues for designing aqueous electro-catalysts that leverage solvent entropy to enhance their performance.

physics.chem-ph↗

arXiv2025

Nanoconfined superionic water is a molecular superionic

Superionic ice, where water molecules dissociate into a lattice of oxygen ions and a rapidly diffusing 'gas' of protons, represents an exotic state of matter with broad implications for planetary interiors and energy applications. Recently, a nanoconfined superionic state of water has been predicted which, in sharp contrast to bulk ice, is comprised of intact water molecules. Here, we apply machine learning and electronic structure simulations to establish how nanoconfined water can be both molecular and superionic. We also explore what insights this material offers for superionic materials and behavior more generally. Similar to bulk ice and other superionic materials, nanoconfined water conducts via concerted chain-like proton migrations which cause the rapid propagation of defects. However, unlike other molecular phases of water, its exceptional conductivity arises from the activation of the Grotthuss mechanism by (i) low barriers to proton transfer and (ii) a flexible hydrogen-bonded network. We propose that these are two key characteristics of fast ionic conduction in molecular superionics. The insights obtained here establish design principles for the discovery of other molecular superionic materials, with potential applications in energy storage and beyond.

physics.chem-ph↗

arXiv2025

An accurate and efficient framework for modelling the surface chemistry of ionic materials

Quantum-mechanical simulations can offer atomic-level insights into chemical processes on surfaces. This understanding is crucial for the rational design of new solid catalysts as well as materials to store energy and mitigate greenhouse gases. However, achieving the accuracy needed for reliable predictions has proven challenging. Density functional theory (DFT), the workhorse quantum-mechanical method, can often lead to inconsistent predictions, necessitating accurate methods from correlated wave-function theory (cWFT). However, the high computational demands and significant user intervention associated with cWFT have traditionally made it impractical to carry out for surfaces. In this work, we address this challenge, presenting an automated framework which leverages multilevel embedding approaches, to apply accurate cWFT methods to the surfaces of ionic materials with computational costs approaching DFT. With this framework, we have reproduced experimental adsorption enthalpies for a diverse set of 19 adsorbate-surface systems. Moreover, we resolve debates on the adsorption configuration of several systems, while offering benchmarks to assess DFT. This framework is open-source, making it possible to more routinely apply cWFT to complex problems involving the surfaces of ionic materials.

physics.chem-ph↗

arXiv2025

Systematic discrepancies between reference methods for non-covalent interactions within the S66 dataset

The accurate treatment of non-covalent interactions is necessary to model a wide range of applications, from molecular crystals to surface catalysts to aqueous solutions and many more. Quantum diffusion Monte Carlo (DMC) and coupled cluster theory with single, double and perturbative triple excitations [CCSD(T)] are considered two widely-trusted methods for treating non-covalent interactions. However, while they have been well-validated for small molecules, recent work has indicated that these two methods can disagree by more than 7.5 kcal/mol for larger systems. The origin of this discrepancy remains unknown. Moreover, the lack of systematic comparisons, particularly for medium-sized complexes, has made it difficult to identify which systems may be prone to such disagreements and the potential scale of these differences. In this work, we leverage the latest developments in DMC to compute interaction energies for the entire S66 dataset, containing 66 medium-sized complexes with a balanced representation of dispersion and electrostatic interactions. Comparison to previous CCSD(T) references reveals systematic trends, with DMC predicting stronger binding than CCSD(T) for electrostatic-dominated systems, while the binding becomes weaker for dispersion-dominated systems. We show that the relative strength of this discrepancy is correlated to the ratio of electrostatic and dispersion interactions, as obtained from energy decomposition analysis methods. Finally, we have pinpointed model systems: the hydrogen-bonded acetic acid dimer (ID 20) and dispersion-dominated uracil-cyclopentane dimer (ID 42), where these discrepancies are particularly prominent. These systems offer cost-effective benchmarks to guide future developments in DMC, CCSD(T) as well as the wider electronic structure theory community.

physics.chem-ph↗

arXiv2025

Spontaneous Surface Charging and Janus Nature of the Hexagonal Boron Nitride-Water Interface

Boron, nitrogen and carbon are neighbors in the periodic table and can form strikingly similar twin structures-hexagonal boron nitride (hBN) and graphene-yet nanofluidic experiments demonstrate drastically different water friction on them. We investigate this discrepancy by probing the interfacial water and atomic-scale properties of hBN using surface-specific vibrational spectroscopy, atomic-resolution atomic force microscopy (AFM), and machine learning-based molecular dynamics. Spectroscopy reveals that pristine hBN acquires significant negative charges upon contacting water at neutral pH, unlike hydrophobic graphene, leading to interfacial water alignment and stronger hydrogen bonding. AFM supports that this charging is not defect-induced. pH-dependent measurements suggest OH- chemisorption and physisorption, which simulations validate as two nearly equally stable states undergoing dynamic exchange. These findings challenge the notion of hBN as chemically inert and hydrophobic, revealing its spontaneous surface charging and Janus nature, and providing molecular insights into its higher water friction compared to carbon surfaces.

physics.chem-ph↗

arXiv2025

Defects induce phase transition from dynamic to static rippling in graphene

Two-dimensional (2D) materials display nanoscale dynamic ripples that significantly impact their properties. Defects within the crystal lattice are the elementary building blocks to tailor the material's morphology. While some studies have explored the link between defective structures and rippling dynamics in 2D materials, a comprehensive understanding of this relationship has yet to be achieved. Here, we address this using machine learning-driven molecular dynamics simulations. Specifically, we find that above a critical concentration of defects, free-standing graphene sheets undergo a dynamic transition from freely propagating to static ripples. Our computational approach captures the dynamics with atomic resolution, and reveals that the transition is driven by elastic interactions between defects. The strength of these interactions is found to vary across defect types and we identify a unifying set of principles driving the dynamic-to-static transition in 2D materials. Our work not only rationalises puzzling experimental results for defective 2D materials, but also paves the way to design two-dimensional devices with tailored rippling dynamics. These insights could lay the foundations for a new class of disorder-based catalytic and interfacial materials.

cond-mat.mtrl-sci↗

arXiv2025

Accurate and efficient machine learning interatomic potentials for finite temperature modeling of molecular crystals

As with many parts of the natural sciences, machine learning interatomic potentials (MLIPs) are revolutionizing the modeling of molecular crystals. However, challenges remain for the accurate and efficient calculation of sublimation enthalpies - a key thermodynamic quantity measuring the stability of a molecular crystal. Specifically, two key stumbling blocks are: (i) the need for thousands of ab initio quality reference structures to generate training data; and (ii) the sometimes unreliable nature of density functional theory, the main technique for generating such data. Exploiting recent developments in foundational models for chemistry and materials science alongside accurate quantum diffusion Monte Carlo benchmarks, offers a promising path forward. Herein, we demonstrate the generation of MLIPs capable of describing molecular crystals at finite temperature and pressure with sub-chemical accuracy, using as few as $\sim 200$ data structures; an order of magnitude improvement over the current state-of-the-art. We apply this framework to compute the sublimation enthalpies of the X23 dataset, accounting for anharmonicity and nuclear quantum effects, achieving sub-chemical accuracy with respect to experiment. Importantly, we show that our framework can be generalized to crystals of pharmaceutical relevance, including paracetamol and aspirin. Nuclear quantum effects are also accurately captured as shown for the case of squaric acid. By enabling accurate modeling at ambient conditions, this work paves the way for deeper insights into pharmaceutical and biological systems.

physics.comp-ph↗

arXiv2025

Protons accumulate at the graphene-water interface

Water's ability to autoionize into hydroxide and hydronium ions profoundly influences surface properties, rendering interfaces either basic or acidic. While it is well-established that protons show an affinity to the air-water interface, a critical knowledge gap exists in technologically relevant surfaces like the graphene-water interface. Here we use machine learning-based simulations with first-principles accuracy to unravel the behavior of the hydroxide and hydronium ions at the graphene-water interface. Our findings reveal that protons accumulate at the graphene-water interface, with the hydronium ion predominantly residing in the first contact layer of water. In contrast, the hydroxide ion exhibits a bimodal distribution, found both near the surface and towards the interior layers. Analysis of the underlying electronic structure reveals local polarization effects, resulting in counterintuitive charge rearrangement. Proton propensity to the graphene-water interface challenges the interpretation of surface experiments and is expected to have far-reaching consequences for ion conductivity, interfacial reactivity, and proton-mediated processes.

physics.chem-ph↗

arXiv2025

Momentum tunnelling between nanoscale liquid flows

The world of nanoscales in fluidics is the frontier where the continuum of fluid mechanics meets the atomic, and even quantum, nature of matter. While water dynamics remains largely classical under extreme confinement, several experiments have recently reported coupling between water transport and the electronic degrees of freedom of the confining materials. This avenue prompts us to reconsider nanoscale hydrodynamic flows under the perspective of interacting excitations, akin to condensed matter frameworks. Here we show, using a combination of many-body theory and molecular simulations, that the flow of a liquid can induce the flow of another liquid behind a separating wall, at odds with the prediction of continuum hydrodynamics. We further show that the range of this 'flow tunnelling' can be tuned through the solid's electronic excitations, with a maximum occurring when these are at resonance with the liquid's charge density fluctuations. Flow tunnelling is expected to play a role in global transport across nanoscale fluidic networks, such as lamellar graphene oxide or MXene membranes. It further suggests exploiting the electronic properties of the confining walls for manipulating liquids via their dielectric spectra, beyond the nature and characteristics of individual molecules.

cond-mat.mes-hall↗

arXiv2024

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

In computational physics, chemistry, and biology, the implementation of new techniques in a shared and open source software lowers barriers to entry and promotes rapid scientific progress. However, effectively training new software users presents several challenges. Common methods like direct knowledge transfer and in-person workshops are limited in reach and comprehensiveness. Furthermore, while the COVID-19 pandemic highlighted the benefits of online training, traditional online tutorials can quickly become outdated and may not cover all the software's functionalities. To address these issues, here we introduce ``PLUMED Tutorials'', a collaborative model for developing, sharing, and updating online tutorials. This initiative utilizes repository management and continuous integration to ensure compatibility with software updates. Moreover, the tutorials are interconnected to form a structured learning path and are enriched with automatic annotations to provide broader context. This paper illustrates the development, features, and advantages of PLUMED Tutorials, aiming to foster an open community for creating and sharing educational resources.

physics.ed-ph↗

arXiv2024

Nuclear quantum effects induce superionic proton transport in nanoconfined water

Recent work has suggested that nanoconfined water may exhibit superionic proton transport at lower temperatures and pressures than bulk water. Using first-principles-level simulations, we study the role of nuclear quantum effects in inducing this superionicity in nanoconfined water. We show that nuclear quantum effects increase the ionic conductivity of nanoconfined hexatic water, leading to superionic behaviour at lower temperatures and pressures than previously thought possible. Our work suggests that superionic water may be accessible in graphene nanocapillary experiments.

cond-mat.mtrl-sci↗

arXiv2024

Introduction to machine learning potentials for atomistic simulations

Machine learning potentials have revolutionised the field of atomistic simulations in recent years and are becoming a mainstay in the toolbox of computational scientists. This paper aims to provide an overview and introduction into machine learning potentials and their practical application to scientific problems. We provide a systematic guide for developing machine learning potentials, reviewing chemical descriptors, regression models, data generation and validation approaches. We begin with an emphasis on the earlier generation of models, such as high-dimensional neural network potentials (HD-NNPs) and Gaussian approximation potential (GAP), to provide historical perspective and guide the reader towards the understanding of recent developments, which are discussed in detail thereafter. Furthermore, we refer to relevant expert reviews, open-source software, and practical examples - further lowering the barrier to exploring these methods. The paper ends with selected showcase examples, highlighting the capabilities of machine learning potentials and how they can be applied to push the boundaries in atomistic simulations.

physics.chem-ph↗

arXiv2024

How Crystalline is Low-Density Amorphous Ice?

Low-density amorphous ice (LDA) is one of the most common solid materials in the Universe and a key material for understanding the many famous anomalies of liquid water. Yet, despite its significance and its discovery dating nearly 90 years, the structure of LDA is debated. It is unclear if LDA is a glassy state representing a liquid or a heavily disordered crystal; indeed, two forms (LDA-I and LDA-II) have been discussed as amorphous and partially crystalline in the literature, respectively. Here, with two widely used water models, we show that the experimental structure factor of LDA is best reproduced computationally by a partially crystalline structure. Models for both LDA-I and LDA-II are highly similar, with differences only due to subtle differences in crystallinity and/or experimental error. Further support for this structural model of LDA comes from experiment: if LDA is partially crystalline, then its route to formation should result in different nanocrystallite cubicities, and thus give rise to different cubicities upon recrystallisation. This memory effect of LDA's creation route is observed and it is incompatible with a fully amorphous material. The results present a unified computational and experimental view that LDA is not fully amorphous but instead a partially crystalline material. This impacts LDA's many roles in nature and potentially our understanding of liquid water. Furthermore, the "re-identification" of such an intensely studied material highlights that great care will be needed when classifying the nature of glassy materials going forward.

physics.chem-ph↗

arXiv2024

Quasi-one-dimensional hydrogen bonding in nanoconfined ice

The Bernal-Fowler ice rules stipulate that each water molecule in an ice crystal should form four hydrogen bonds. However, in extreme or constrained conditions, the arrangement of water molecules deviates from conventional ice rules, resulting in properties significantly different from bulk water. In this study, we employ machine learning-driven first-principles simulations to identify a new stabilization mechanism in nanoconfined ice phases beyond conventional ice rules. Instead of forming four hydrogen bonds, nanoconfined crystalline ice can form a quasi-one-dimensional hydrogen-bonded structure that exhibits only two hydrogen bonds per water molecule. These structures consist of strongly hydrogen-bonded linear chains of water molecules that zig-zag along one dimension, stabilized by van der Waals interactions that stack these chains along the other dimension. The unusual interplay of hydrogen bonding and van der Waals interactions in nanoconfined ice results in atypical proton behavior such as potential ferroelectric behavior, low dielectric response, and long-range proton dynamics.

cond-mat.stat-mech↗

arXiv2024

On the increase of the melting temperature of water confined in one-dimensional nano-cavities

Water confined in nanoscale cavities plays a crucial role in everyday phenomena in geology and biology, as well as technological applications at the water-energy nexus. However, even understanding the basic properties of nano-confined water is extremely challenging for theory, simulations, and experiments. In particular, determining the melting temperature of quasi-one-dimensional ice polymorphs confined in carbon nanotubes has proven to be an exceptionally difficult task, with previous experimental and classical simulations approaches report values ranging from $\sim 180 \text{ K}$ up to $\sim 450 \text{ K}$ at ambient pressure. In this work, we use a machine learning potential that delivers first principles accuracy to study the phase diagram of water for confinement diameters $ 9.5 < d < 12.5 \text{ Å}$. We find that several distinct ice polymorphs melt in a surprisingly narrow range between $\sim 280 \text{ K}$ and $\sim 310 \text{ K}$, with a melting mechanism that depends on the nanotube diameter. These results shed new light on the melting of ice in one-dimension and have implications for the operating conditions of carbon-based filtration and desalination devices.

cond-mat.mtrl-sci↗

arXiv2024

The Wetting of H$_2$O by CO$_2$

Biphasic interfaces are complex but fascinating regimes that display a number of properties distinct from those of the bulk. The CO$_2$-H$_2$O interface, in particular, has been the subject of a number of studies on account of its importance for the carbon life cycle as well as carbon capture and sequestration schemes. Despite this attention, there remain a number of open questions on the nature of the CO$_2$-H$_2$O interface, particularly concerning the interfacial tension and phase behavior of CO$_2$ at the interface. In this paper, we seek to address these ambiguities using ab initio-quality simulations. Harnessing the benefits of machine-learned potentials and enhanced statistical sampling methods, we present an ab initio-level description of the CO$_2$-H$_2$O interface. Interfacial tensions are predicted from 1-500 bar and found to be in close agreement with experiment at the pressures for which experimental data is available. Structural analyses indicate the build-up of an adsorbed, saturated CO$_2$ film forming at low pressure (20 bar) with properties similar to those of the bulk liquid, but preferential perpendicular alignment with respect to the interface. CO$_2$ monolayer build-up coincides with a reduced structuring of water molecules close to the interface. This study highlights the predictive nature of machine-learned potentials for complex macroscopic properties of biphasic interfaces, and the mechanistic insight obtained into carbon dioxide aggregation at the water interface is of high relevance for geoscience, climate research, and materials science.

cond-mat.mtrl-sci↗

arXiv2024

Cooperative CO$_2$ capture via oxalate formation on metal-decorated graphene

CO$_2$ capture using carbon-based materials, particularly graphene and graphene-like materials, is a promising strategy to deal with CO$_2$ emissions. However, significant gaps remain in our understanding of the molecular-level interaction between CO$_2$ molecules and graphene, particularly, in terms of chemical bonding and electron transfer. In this work, we employ random structure search and density functional theory to understand the adsorption of CO$_2$ molecules on Ca, Sr, Na, K, and Ti decorated graphene surfaces. Compared to the pristine material, we observe enhanced CO$_2$ adsorption on the decorated graphene surfaces. Particularly on group 2 metals and titanium decorated graphene, CO$_2$ can be strongly chemisorbed as a bent CO$_2$ anion or as an oxalate, depending on the number of CO$_2$ molecules. Electronic structure analysis reveals the adsorption mechanism to involve an ionic charge transfer from the metal adatom to the adsorbed CO$_2$. Overall, this study suggests that reducing CO$_2$ to oxalate on group 2 metals and titanium metal-decorated graphene surfaces is a potential strategy for CO$_2$ storage.

cond-mat.mtrl-sci↗