arXiv subjects
Publications and source records attributed to Anirban Banerjee.
A square matrix is called stochastic (or row-stochastic) if it is non-negative and has each row sum equal to unity. Here, we constitute an eigenvalue localization theorem for a stochastic matrix, by using its principal submatrices. As an application, we provide a suitable bound for the eigenvalues, other than unity, of the Randić matrix of a connected graph.
In this article, we discuss when one can extend an r-regular graph to an r + 1 regular by adding edges. Different conditions on the num- ber of vertices n and regularity r are developed. We derive an upper bound of r, depending on n, for which, every regular graph G(n, r) can be extended to an r + 1-regular graph with n vertices. Presence of induced complete bipartite subgraph and complete subgraph is dis- cussed, separately, for the extension of regularity.
Here, we find the characteristics polynomial of normalized Laplacian of a tree. The coefficients of this polynomial are expressed by the higher order general Randić indices for matching, whose values depend on the structure of the tree. We also find the expression of these indices for starlike tree and a double-starlike tree, $H_m(p,q)$. Moreover, we show that two cospectral $H_m(p,q)$ of the same diameter are isomorphic.
Many methods have been developed for finding the commonalities between different organisms to study their phylogeny. The structure of metabolic networks also reveal valuable insights into metabolic capacity of species as well as into the habitats where they have evolved. We constructed metabolic networks of 79 fully sequenced organisms and compared their architectures. We used spectral density of normalized Laplacian matrix for comparing the structure of networks. The eigenvalues of this matrix reflect not only the global architecture of a network but also the local topologies that are produced by different graph evolutionary processes like motif duplication or joining. A divergence measure on spectral densities is used to quantify the distances between various metabolic networks, and a split network is constructed to analyze the phylogeny from these distances. In our analysis, we focus on the species, which belong to different classes, but appear more related to each other in the phylogeny. We tried to explore whether they have evolved under similar environmental conditions or have similar life histories. With this focus, we have obtained interesting insights into the phylogenetic commonality between different organisms.
Networks are widely used to represent interaction pattern among the components in complex systems. Structures of real networks from differ- ent domains may vary quite significantly. Since there is an interplay be- tween network architecture and dynamics, structure plays an important role in communication and information spreading on a network. Here we investigate the underlying undirected topology of different biological networks which support faster spreading of information and are better in communication. We analyze the good expansion property by using the spectral gap and communicability between nodes. Different epidemic models are also used to study the transmission of information in terms of disease spreading through individuals (nodes) in those networks. More- over, we explore the structural conformation and properties which may be responsible for better communication. Among all biological networks studied here, the undirected structure of neuronal networks not only pos- sesses the small-world property but the same is expressed remarkably to a higher degree than any randomly generated network which possesses the same degree sequence. A relatively high percentage of nodes, in neuronal networks, form a higher core in their structure. Our study shows that the underlying undirected topology in neuronal networks is significantly qualitatively different than the same from other biological networks and that they may have evolved in such a way that they inherit a (undirected) structure which is excellent and robust in communication.
Here we have investigated a few properties of the eigenvalues of normalized (geometric) graph Laplacian in different graphs. Preservation of eigenvalue 1 from a particular subgraph to the entire graph, the spectrum of the graph constructed with triangles share a common vertex have been addressed. Further using the number and degrees of common neighbors between vertices some new upper bounds for the largest eigenvalue have been introduced.
Evolutionary mechanism in a self-organized system cause some functional changes that force to adapt new conformation of the interaction pattern between the components of that system. Measuring the structural differences one can retrace the evolutionary relation between two systems. We present a method to quantify the topological distance between two networks of different sizes, finding that the architectures of the networks are more similar within the same class than the outside of their class. With 43 cellular networks of different species, we show that the evolutionary relationship can be elucidated from the structural distances.
It is basic question in biology and other fields to identify the char- acteristic properties that on one hand are shared by structures from a particular realm, like gene regulation, protein-protein interaction or neu- ral networks or foodwebs, and that on the other hand distinguish them from other structures. We introduce and apply a general method, based on the spectrum of the normalized graph Laplacian, that yields repre- sentations, the spectral plots, that allow us to find and visualize such properties systematically. We present such visualizations for a wide range of biological networks and compare them with those for networks derived from theoretical schemes. The differences that we find are quite striking and suggest that the search for universal properties of biological networks should be complemented by an understanding of more specific features of biological organization principles at different scales.
We present the spectrum of the (normalized) graph Laplacian as a systematic tool for the investigation of networks, and we describe basic properties of eigenvalues and eigenfunctions. Processes of graph formation like motif joining or duplication leave characteristic traces in the spectrum. This can suggest hypotheses about the evolution of a graph representing biological data. To this data, we analyze several biological networks in terms of rough qualitative data of their spectra.
The spectrum of the normalized graph Laplacian yields a very comprehensive set of invariants of a graph. In order to understand the information contained in those invariants better, we systematically investigate the behavior of this spectrum under local and global operations like motif doubling, graph joining or splitting. The eigenvalue 1 plays a particular role, and we therefore emphasize those constructions that change its multiplicity in a controlled manner, like the iterated duplication of nodes.
From the spectral plot of the (normalized) graph Laplacian, the essential qualitative properties of a network can be simultaneously deduced. Given a class of empirical networks, reconstruction schemes for elucidating the evolutionary dynamics leading to those particular data can then be developed. This method is exemplified for protein-protein interaction networks. Traces of their evolutionary history of duplication and divergence processes are identified. In particular, we can identify typical specific features that robustly distinguish protein-protein interaction networks from other classes of networks, in spite of possible statistical fluctuations of the underlying data.