arXiv subjects

Ankita Biswas

Publications and source records attributed to Ankita Biswas.

5 recordsLinked to original sources

arXiv2026

Towards "on-demand" van der Waals epitaxy with adaptive ensemble sampling atomistic workflows

Traditional approaches to achieve targeted epitaxial growth involves exploring a vast parameter space of thermodynamical and kinetic drivers (e.g., temperature, pressure, chemical potential etc). This tedious and time-consuming approach becomes particularly cumbersome to accelerate synthesis and characterization of novel materials with complex dependencies on local chemical environment, temperature and lattice-strains, specifically nanoscale heterostructures of layered 2D materials. We combine the strength of next generation supercomputers at the extreme scale, machine learning and classical molecular dynamics simulations within an adaptive real time closed-loop virtual environment steered by Bayesian optimization to enable asynchronous ensemble sampling of the synthesis space, and apply it to the recrystallization phenomena of amorphous transition-metal dichalcogenide (TMDC) bilayer to form stack moiré heterostructures under various growth parameters. We show that such asynchronous ensemble sampling frameworks for materials simulations can be promising towards achieving on-demand epitaxy of van der Waals stacked moiré devices, paving the way towards a robust autonomous materials synthesis pipeline to enable unprecedented discovery of new functionalities.

cond-mat.mtrl-sci↗

arXiv2026

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

cond-mat.mtrl-sci↗

arXiv2026

Constrained Diffusion for Accelerated Structure Relaxation of Inorganic Solids with Point Defects

Point defects affect material properties by altering electronic states and modifying local bonding environments. However, high-throughput first-principles simulations of point defects are costly due to large simulation cells and complex energy landscapes. To this end, we propose a generative framework for simulating point defects, overcoming the limits of costly first-principles simulators. By leveraging a primal-dual algorithm, we introduce a constraint-aware diffusion model which outperforms existing constrained diffusion approaches in this domain. Across six defect configuration settings for Bi2Te3, the proposed approach provides state-of-the-art performance generating physically grounded structures.

cond-mat.mtrl-sci↗

arXiv2025

KinDEL: DNA-Encoded Library Dataset for Kinase Inhibitors

DNA-Encoded Libraries (DELs) represent a transformative technology in drug discovery, facilitating the high-throughput exploration of vast chemical spaces. Despite their potential, the scarcity of publicly available DEL datasets presents a bottleneck for the advancement of machine learning methodologies in this domain. To address this gap, we introduce KinDEL, one of the largest publicly accessible DEL datasets and the first one that includes binding poses from molecular docking experiments. Focused on two kinases, Mitogen-Activated Protein Kinase 14 (MAPK14) and Discoidin Domain Receptor Tyrosine Kinase 1 (DDR1), KinDEL includes 81 million compounds, offering a rich resource for computational exploration. Additionally, we provide comprehensive biophysical assay validation data, encompassing both on-DNA and off-DNA measurements, which we use to evaluate a suite of machine learning techniques, including novel structure-based probabilistic models. We hope that our benchmark, encompassing both 2D and 3D structures, will help advance the development of machine learning models for data-driven hit identification using DELs.

q-bio.QM↗

arXiv2023

Ab initio based study on atomic ordering in {(Ba, Sr)}TiO$_3$

\ We combine density functional theory and molecular dynamics simulations to investigate the impact of Sr concentration and atomic ordering on the structural and ferroelectric properties of (Ba, Sr)TiO$_3$. On one hand, the macroscopic structural properties are rather insensitive to atomic ordering. On the other hand, the Curie temperature and polarization differ by $9$\% and $17$\% for different symmetries of the Sr distribution, respectively. Local ordering of Sr induces preferential polarization directions and influences the relative stability of the three ferroelectric phases.

cond-mat.mtrl-sci↗