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Anne Louise Kristoffersen

Publications and source records attributed to Anne Louise Kristoffersen.

4 recordsLinked to original sources

7 Tesla Quantitative MRI and Machine Learning for Exploratory Motor Subtype Stratification and Diagnosis in Parkinson's Disease

Parkinson's disease (PD) is a highly heterogeneous disease, including which motor symptoms are dominating. Imaging biomarkers that support subtype stratification could also improve biological understanding and study design, and enable personalized treatment strategies. This study evaluates whether deep-learning based automatic brain segmentation, in addition to quantitative maps from 7 Tesla MRI, can highlight differences between Healthy Controls (HC), Postural Instability and Gait Difficulty (PIGD) and Tremor Dominant (TD), and subsequently be used for objective PD stratification. The performance of machine learning classifiers may be improved with feature selection. 21 HC, and 24 people with PD (PwP) were included. The U-Net training was assessed with DSC. Two classification approaches using 5-fold cross-validation were defined across three tasks: (1) HC vs PwP; (2) PIGD vs TD; (3) multiclass, HC vs PIGD vs TD. Approach A used all extracted features. Approach B found the optimal subset of features for the classification tasks. The U-Net achieved mean DSC of 0.86 for all ROIs during training. Approach A: Task 1 best accuracy of 0.69 and best AUC of 0.73. Task 2 accuracy 0.69, AUC 0.90. Task 3 accuracy 0.62, AUC 0.66. Approach B: Task 1 accuracy of 0.82 and AUC of 0.93. Task 2 accuracy 1.00, AUC 1.00. Task 3 accuracy 0.73, AUC 0.91. DL-based segmentation combined with qMRI feature selection improved classification relative to using all features, supporting the potential of interpretable, low-dimensional imaging signatures for PD diagnosis support and phenotype stratification. Larger, multi-site studies are warranted to assess generalizability and stability.

eess.IV↗

GOUHFI 2.0: A Next-Generation Toolbox for Brain Segmentation and Cortex Parcellation at Ultra-High Field MRI

Ultra-High Field MRI (UHF-MRI) is increasingly used in large-scale neuroimaging studies, yet automatic brain segmentation and cortical parcellation remain challenging due to signal inhomogeneities, heterogeneous contrasts and resolutions, and the limited availability of tools optimized for UHF data. Standard software packages such as FastSurferVINN and SynthSeg+ often yield suboptimal results when applied directly to UHF images, thereby restricting region-based quantitative analyses. To address this need, we introduce GOUHFI 2.0, an updated implementation of GOUHFI that incorporates increased training data variability and additional functionalities, including cortical parcellation and volumetry. GOUHFI 2.0 preserves the contrast- and resolution-agnostic design of the original toolbox while introducing two independently trained 3D U-Net segmentation tasks. The first performs whole-brain segmentation into 35 labels across contrasts, resolutions, field strengths and populations, using a domain-randomization strategy and a training dataset of 238 subjects. Using the same training data, the second network performs cortical parcellation into 62 labels following the Desikan-Killiany-Tourville (DKT) protocol. Across multiple datasets, GOUHFI 2.0 demonstrated improved segmentation accuracy relative to the original toolbox, particularly in heterogeneous cohorts, and produced reliable cortical parcellations. In addition, the integrated volumetry pipeline yielded results consistent with standard volumetric workflows. Overall, GOUHFI 2.0 provides a comprehensive solution for brain segmentation, parcellation and volumetry across field strengths, and constitutes the first deep-learning toolbox enabling robust cortical parcellation at UHF-MRI.

eess.IV↗

GOUHFI: a novel contrast- and resolution-agnostic segmentation tool for Ultra-High Field MRI

Recently, Ultra-High Field MRI (UHF-MRI) has become more available and one of the best tools to study the brain. One common step in quantitative neuroimaging is to segment the brain into several regions, which has been done using software packages like FreeSurfer , FastSurferVINN or SynthSeg. However, the differences between UHF-MRI and 1.5T or 3T images are such that the automatic segmentation techniques optimized at these field strengths usually produce unsatisfactory segmentation results for UHF images. Thus, it has been particularly challenging to perform region-based quantitative analyses as typically done with 1.5-3T data, underscoring the crucial need for developing new automatic segmentation techniques designed to handle UHF images. Hence, we propose a novel Deep Learning (DL)-based segmentation technique called GOUHFI: Generalized and Optimized segmentation tool for Ultra-High Field Images, designed to segment UHF images of various contrasts and resolutions. For training, we used a total of 206 label maps from datasets acquired at 3T, 7T and 9.4T. In contrast to most DL strategies, we used a domain randomization approach, where synthetic images were used to train a 3D U-Net. GOUHFI was tested on seven different datasets and compared to existing techniques like FastSurferVINN,SynthSeg and CEREBRUM-7T. GOUHFI was able to segment the six contrasts and seven resolutions tested at 3T, 7T and 9.4T. Average Dice scores of 0.90, 0.90 and 0.93 were computed against the ground truth segmentations at 3T, 7T and 9.4T, respectively. Ultimately, GOUHFI is a promising new segmentation tool, being the first of its kind proposing a contrast- and resolution-agnostic alternative for UHF-MRI without requiring fine-tuning or retraining, making it the forthcoming alternative for neuroscientists working with UHF-MRI or even lower field strengths.

eess.IV↗

Stability of chiral magnon condensates in collinear antiferromagnetic insulators

Quasiequilibrium magnon Bose-Einstein condensates in ferromagnetic insulators have been a field of great interest, while condensation in antiferromagnetic systems has not yet been explored in detail. We analyze the stability of condensed chiral magnons in two antiferromagnetic insulators: a uniaxial easy-axis system and a biaxial system. We show that two-component magnon condensation and inter-magnon interactions are essential to create metastable magnon condensation. The uniaxial system with a Rashba-type Dzyaloshinskii-Moriya interaction supports two degenerate condensate populations at finite wave vectors. We find that the condensation state in this model is (meta)stable only when the distribution of condensed magnons between the two populations is symmetric. In addition, we demonstrate the emergence of a zero-sound-like Goldstone mode in antiferromagnetic systems that support two-component magnon condensation. On the other hand, in the biaxial system without Dzyaloshinskii-Moriya interaction, we predict that the magnon condensate cannot stabilize due to the breaking of the magnon degeneracy. Our results suggest that this instability is a general characteristic of single-component quasiequilibrium quasiparticle condensates.

cond-mat.mes-hall↗