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Anthonie W. J. Muller

Publications and source records attributed to Anthonie W. J. Muller.

6 recordsLinked to original sources

Major transitions in evolution linked to thermal gradients above hydrothermal vents

The emergence of the main divisions of today's life: (1) unicellular prokaryotes, (2) unicellular eukaryotes, (3) multicellular eukaryotes, and (4) metazoans, are examples of the--still unexplained--major transitions in evolution. Regarding the origin of life, I have proposed that primordial life functioned as heat engine (thermosynthesis) while thermally cycled in convecting volcanic hot springs. Here I argue for a role of thermal gradients above submarine hydrothermal vents (SHV) in several major transitions. The last decade has witnessed the emergence of phononics, a novel discipline in physics based on controlled heat transport in thermal gradients. It builds thermal analogs to electronic devices: the thermal diode, the thermal transistor, the thermal switch, the thermal amplifier, the thermal memory--the thermal computer has been proposed. Encouraged by (1) the many similarities between microtubules (MT) and carbon nanotubes, which have a very high thermal conductivity, and (2) the recent discovery of a silk protein which also has a very high thermal conductivity, I combine and extend the mentioned ideas, and propose the general conjecture that several major transitions of evolution were effected by thermal processes, with four additional partial conjectures: (1) The first organisms used heat engines during thermosynthesis in convection cells; (2) The first eukaryotic cells used MT during thermosynthesis in the thermal gradient above SHV; (3) The first metazoans used transport of water or in water during thermosynthesis above SHV under an ice-covered ocean during the Gaskiers Snowball Earth; and (4) The first mammalian brain used a thermal machinery based on thermal gradients in or across the cortex. When experimentally proven these conjectures, which are testable by the methods of synthetic biology, would significantly enhance our understanding of life.

physics.gen-ph↗

Emergence of Animals from Heat Engines. Part 1. Before the Snowball Earths

Previous studies modelled the origin of life and the emergence of photosynthesis on the early Earth-i.e. the origin of plants-in terms of biological heat engines that worked on thermal cycling caused by suspension in convecting water. In this new series of studies, heat engines using a more complex mechanism for thermal cycling are invoked to explain the origin of animals as well. Biological exploitation of the thermal gradient above a submarine hydrothermal vent is hypothesized, where a relaxation oscillation in the length of a protein 'thermotether' would have yielded the thermal cycling required for thermosynthesis. Such a thermal transition driven movement is not impeded by the low Reynolds number of a small scale. In the model the thermotether together with the protein export apparatus evolved into a 'flagellar proton pump' that turned into today's bacterial flagellar motor after the acquisition of the proton-pumping respiratory chain. The flagellar pump resembles Feynman's ratchet, and the 'flagellar computer' that implements chemotaxis a Turing machine: the stator would have functioned as Turing's paper tape and the stator's proton-transferring subunits with their variable conformation as the symbols on the tape. The existence of a cellular control centre in the cilium of the eukaryotic cell is proposed that would have evolved from the prokaryotic flagellar computer.

physics.bio-ph↗

A search for thermosynthesis: starvation survival in thermally cycled bacteria

In a pioneering study experimental evidence was sought of thermosynthesis, a theoretical biological mechanism for free energy gain from thermal cycling that has been invoked as energy source for the origin of life. A PCR machine applied thermal cycling to the K12 strain of Escherichia coli. The viability of this organism during starvation was determined at cyclic and at constant temperature. The found increase in the viability counts during the first days of starvation is consistent with thermosynthesis. The scattering in the results is however large. Further research is needed to proof that the increase is indeed due to a thermosynthesis process.

physics.bio-ph↗

Sorption heat engines: simple inanimate negative entropy generators

The name 'sorption heat engines' is proposed for simple negative entropy generators that are driven by thermal cycling and work on alternating adsorption and desorption. These generators are in general not explicitly recognized as heat engines. Their mechanism is applicable to the fields of engineering, physics, chemistry, geology, and biology, in particular the origin of life. Four kinds of sorption heat engines are distinguished depending on the occurrence of changes in the adsorbent or adsorbate during the thermal cycle.

physics.gen-ph↗

Photosystem 0, a proposed ancestral photosystem without reducing power that synthesized ATP during light-dark cycling

Photosystem 0 concerns a primitive mechanism for free energy gain as ATP from fluctuating light during early evolution. The PS0 reaction centers had no reducing power: charge transport was only temporary. Light induced within the reaction centers metastable dipoles that generated a membrane potential. This in turn drove ATP synthesis by protons moving through the ATP synthase enzyme. After the decay of the dipole potential in the dark, the protons either (1) returned across the membrane by conduction or (2) were pumped back by ATP synthase, backwards active as ATPase at a higher H+/ATP ratio. PS0 constitutes a link to previously proposed free energy sources for early evolution that worked on thermal cycling. Several contemporary photosynthetic phenomena may be relics of PS0.

physics.bio-ph↗

Thermosynthesis as energy source for the RNA World: a new model for the origin of life

The thermosynthesis concept, biological free energy gain from thermal cycling, is combined with the concept of the RNA World. The resulting overall origin of life model gives new explanations for the emergence of the genetic code and the ribosome. The first protein named pF1 obtains the energy to support the RNA world by a thermal variation of F1 ATP synthase's binding change mechanism. This pF1 is the single translation product during the emergence of the genetic machinery. During thermal cycling pF1 condenses many substrates with broad specificity, yielding NTPs and randomly constituted protein and RNA libraries that contain (self)-replicating RNA. The smallness of pF1 permits the emergence of the genetic machinery by selection of RNA that increases the fraction of pF1s in the protein library: (1) a progenitor of rRNA that concatenates amino acids bound to (2) a chain of 'positional tRNAs' linked by mutual recognition, yielding a pF1 (or its main motif); this positional tRNA set gradually evolves to a set of regular tRNAs functioning according to the genetic code, with concomitant emergence of (3) an mRNA coding for pF1.

q-bio.PE↗