arXiv subjects

Anthony Wirth

Publications and source records attributed to Anthony Wirth.

30 records · Page 2Linked to original sources

arXiv2020

Parameterized Correlation Clustering in Hypergraphs and Bipartite Graphs

Motivated by applications in community detection and dense subgraph discovery, we consider new clustering objectives in hypergraphs and bipartite graphs. These objectives are parameterized by one or more resolution parameters in order to enable diverse knowledge discovery in complex data. For both hypergraph and bipartite objectives, we identify parameter regimes that are equivalent to existing objectives and share their (polynomial-time) approximation algorithms. We first show that our parameterized hypergraph correlation clustering objective is related to higher-order notions of normalized cut and modularity in hypergraphs. It is further amenable to approximation algorithms via hyperedge expansion techniques. Our parameterized bipartite correlation clustering objective generalizes standard unweighted bipartite correlation clustering, as well as bicluster deletion. For a certain choice of parameters it is also related to our hypergraph objective. Although in general it is NP-hard, we highlight a parameter regime for the bipartite objective where the problem reduces to the bipartite matching problem and thus can be solved in polynomial time. For other parameter settings, we present approximation algorithms using linear program rounding techniques. These results allow us to introduce the first constant-factor approximation for bicluster deletion, the task of removing a minimum number of edges to partition a bipartite graph into disjoint bi-cliques. In several experimental results, we highlight the flexibility of our framework and the diversity of results that can be obtained in different parameter settings. This includes clustering bipartite graphs across a range of parameters, detecting motif-rich clusters in an email network and a food web, and forming clusters of retail products in a product review hypergraph, that are highly correlated with known product categories.

cs.DS↗

arXiv2019

Graph Clustering in All Parameter Regimes

Resolution parameters in graph clustering represent a size and quality trade-off. We address the task of efficiently solving a parameterized graph clustering objective for all values of a resolution parameter. Specifically, we consider an objective we call LambdaPrime, involving a parameter $λ\in (0,1)$. This objective is related to other parameterized clustering problems, such as parametric generalizations of modularity, and captures a number of specific clustering problems as special cases, including sparsest cut and cluster deletion. While previous work provides approximation results for a single resolution parameter, we seek a set of approximately optimal clusterings for all values of $λ$ in polynomial time. In particular, we ask the question, how small a family of clusterings suffices to optimize -- or to approximately optimize -- the LambdaPrime objective over the full possible spectrum of $λ$? We obtain a family of logarithmically many clusterings by solving the parametric linear programming relaxation of LambdaPrime at a logarithmic number of parameter values, and round their solutions using existing approximation algorithms. We prove that this number is tight up to a constant factor. Specifically, for a certain class of ring graphs, a logarithmic number of feasible solutions is required to provide a constant-factor approximation for the LambdaPrime LP relaxation in all parameter regimes. We additionally show that for any graph with $n$ nodes and $m$ edges, there exists a set of $m$ or fewer clusterings such that for every $λ\in (0,1)$, the family contains an exact solution to the LambdaPrime objective. There also exists a set of $O(\log n)$ clusterings that provide a $(1+\varepsilon)$-approximate solution in all parameter regimes; we demonstrate simple graph classes for which these bounds are tight.

cs.CC↗

arXiv2019

Learning Resolution Parameters for Graph Clustering

Finding clusters of well-connected nodes in a graph is an extensively studied problem in graph-based data analysis. Because of its many applications, a large number of distinct graph clustering objective functions and algorithms have already been proposed and analyzed. To aid practitioners in determining the best clustering approach to use in different applications, we present new techniques for automatically learning how to set clustering resolution parameters. These parameters control the size and structure of communities that are formed by optimizing a generalized objective function. We begin by formalizing the notion of a parameter fitness function, which measures how well a fixed input clustering approximately solves a generalized clustering objective for a specific resolution parameter value. Under reasonable assumptions, which suit two key graph clustering applications, such a parameter fitness function can be efficiently minimized using a bisection-like method, yielding a resolution parameter that fits well with the example clustering. We view our framework as a type of single-shot hyperparameter tuning, as we are able to learn a good resolution parameter with just a single example. Our general approach can be applied to learn resolution parameters for both local and global graph clustering objectives. We demonstrate its utility in several experiments on real-world data where it is helpful to learn resolution parameters from a given example clustering.

cs.SI↗

arXiv2018

Correlation Clustering in Data Streams

Clustering is a fundamental tool for analyzing large data sets. A rich body of work has been devoted to designing data-stream algorithms for the relevant optimization problems such as $k$-center, $k$-median, and $k$-means. Such algorithms need to be both time and and space efficient. In this paper, we address the problem of correlation clustering in the dynamic data stream model. The stream consists of updates to the edge weights of a graph on $n$ nodes and the goal is to find a node-partition such that the end-points of negative-weight edges are typically in different clusters whereas the end-points of positive-weight edges are typically in the same cluster. We present polynomial-time, $O(n\cdot \ \mbox{polylog}~n)$-space approximation algorithms for natural problems that arise. We first develop data structures based on linear sketches that allow the "quality" of a given node-partition to be measured. We then combine these data structures with convex programming and sampling techniques to solve the relevant approximation problem. Unfortunately, the standard LP and SDP formulations are not obviously solvable in $O(n\cdot \mbox{polylog}~n)$-space. Our work presents space-efficient algorithms for the convex programming required, as well as approaches to reduce the adaptivity of the sampling.

cs.DS↗

arXiv2018

Correlation Clustering Generalized

We present new results for LambdaCC and MotifCC, two recently introduced variants of the well-studied correlation clustering problem. Both variants are motivated by applications to network analysis and community detection, and have non-trivial approximation algorithms. We first show that the standard linear programming relaxation of LambdaCC has a $Θ(\log n)$ integrality gap for a certain choice of the parameter $λ$. This sheds light on previous challenges encountered in obtaining parameter-independent approximation results for LambdaCC. We generalize a previous constant-factor algorithm to provide the best results, from the LP-rounding approach, for an extended range of $λ$. MotifCC generalizes correlation clustering to the hypergraph setting. In the case of hyperedges of degree $3$ with weights satisfying probability constraints, we improve the best approximation factor from $9$ to $8$. We show that in general our algorithm gives a $4(k-1)$ approximation when hyperedges have maximum degree $k$ and probability weights. We additionally present approximation results for LambdaCC and MotifCC where we restrict to forming only two clusters.

cs.CC↗

arXiv2018

Unifying Sparsest Cut, Cluster Deletion, and Modularity Clustering Objectives with Correlation Clustering

Graph clustering, or community detection, is the task of identifying groups of closely related objects in a large network. In this paper we introduce a new community-detection framework called LambdaCC that is based on a specially weighted version of correlation clustering. A key component in our methodology is a clustering resolution parameter, $λ$, which implicitly controls the size and structure of clusters formed by our framework. We show that, by increasing this parameter, our objective effectively interpolates between two different strategies in graph clustering: finding a sparse cut and forming dense subgraphs. Our methodology unifies and generalizes a number of other important clustering quality functions including modularity, sparsest cut, and cluster deletion, and places them all within the context of an optimization problem that has been well studied from the perspective of approximation algorithms. Our approach is particularly relevant in the regime of finding dense clusters, as it leads to a 2-approximation for the cluster deletion problem. We use our approach to cluster several graphs, including large collaboration networks and social networks.

cs.DS↗

arXiv2018

A Projection Method for Metric-Constrained Optimization

We outline a new approach for solving optimization problems which enforce triangle inequalities on output variables. We refer to this as metric-constrained optimization, and give several examples where problems of this form arise in machine learning applications and theoretical approximation algorithms for graph clustering. Although these problem are interesting from a theoretical perspective, they are challenging to solve in practice due to the high memory requirement of black-box solvers. In order to address this challenge we first prove that the metric-constrained linear program relaxation of correlation clustering is equivalent to a special case of the metric nearness problem. We then developed a general solver for metric-constrained linear and quadratic programs by generalizing and improving a simple projection algorithm originally developed for metric nearness. We give several novel approximation guarantees for using our framework to find lower bounds for optimal solutions to several challenging graph clustering problems. We also demonstrate the power of our framework by solving optimizing problems involving up to 10^{8} variables and 10^{11} constraints.

math.NA↗

arXiv2017

Correlation Clustering with Low-Rank Matrices

Correlation clustering is a technique for aggregating data based on qualitative information about which pairs of objects are labeled 'similar' or 'dissimilar.' Because the optimization problem is NP-hard, much of the previous literature focuses on finding approximation algorithms. In this paper we explore how to solve the correlation clustering objective exactly when the data to be clustered can be represented by a low-rank matrix. We prove in particular that correlation clustering can be solved in polynomial time when the underlying matrix is positive semidefinite with small constant rank, but that the task remains NP-hard in the presence of even one negative eigenvalue. Based on our theoretical results, we develop an algorithm for efficiently "solving" low-rank positive semidefinite correlation clustering by employing a procedure for zonotope vertex enumeration. We demonstrate the effectiveness and speed of our algorithm by using it to solve several clustering problems on both synthetic and real-world data.

cs.LG↗

arXiv2016

Efficient Parallel Algorithms for k-Center Clustering

The k-center problem is one of several classic NP-hard clustering questions. For contemporary massive data sets, RAM-based algorithms become impractical. And although there exist good sequential algorithms for k-center, they are not easily parallelizable. In this paper, we design and implement parallel approximation algorithms for this problem. We observe that Gonzalez's greedy algorithm can be efficiently parallelized in several MapReduce rounds; in practice, we find that two rounds are sufficient, leading to a 4-approximation. We contrast this with an existing parallel algorithm for k-center that runs in a constant number of rounds, and offers a 10-approximation. In depth runtime analysis reveals that this scheme is often slow, and that its sampling procedure only runs if k is sufficiently small, relative to the input size. To trade off runtime for approximation guarantee, we parameterize this sampling algorithm, and find in our experiments that the algorithm is not only faster, but sometimes more effective. Yet the parallel version of Gonzalez is about 100 times faster than both its sequential version and the parallel sampling algorithm, barely compromising solution quality.

cs.DC↗

arXiv2016

Access Time Tradeoffs in Archive Compression

Web archives, query and proxy logs, and so on, can all be very large and highly repetitive; and are accessed only sporadically and partially, rather than continually and holistically. This type of data is ideal for compression-based archiving, provided that random-access to small fragments of the original data can be achieved without needing to decompress everything. The recent RLZ (relative Lempel Ziv) compression approach uses a semi-static model extracted from the text to be compressed, together with a greedy factorization of the whole text encoded using static integer codes. Here we demonstrate more precisely than before the scenarios in which RLZ excels. We contrast RLZ with alternatives based on block-based adaptive methods, including approaches that "prime" the encoding for each block, and measure a range of implementation options using both hard-disk (HDD) and solid-state disk (SSD) drives. For HDD, the dominant factor affecting access speed is the compression rate achieved, even when this involves larger dictionaries and larger blocks. When the data is on SSD the same effects are present, but not as markedly, and more complex trade-offs apply.

cs.IT↗

arXiv2015

Incidence Geometries and the Pass Complexity of Semi-Streaming Set Cover

Set cover, over a universe of size $n$, may be modelled as a data-streaming problem, where the $m$ sets that comprise the instance are to be read one by one. A semi-streaming algorithm is allowed only $O(n\, \mathrm{poly}\{\log n, \log m\})$ space to process this stream. For each $p \ge 1$, we give a very simple deterministic algorithm that makes $p$ passes over the input stream and returns an appropriately certified $(p+1)n^{1/(p+1)}$-approximation to the optimum set cover. More importantly, we proceed to show that this approximation factor is essentially tight, by showing that a factor better than $0.99\,n^{1/(p+1)}/(p+1)^2$ is unachievable for a $p$-pass semi-streaming algorithm, even allowing randomisation. In particular, this implies that achieving a $Θ(\log n)$-approximation requires $Ω(\log n/\log\log n)$ passes, which is tight up to the $\log\log n$ factor. These results extend to a relaxation of the set cover problem where we are allowed to leave an $\varepsilon$ fraction of the universe uncovered: the tight bounds on the best approximation factor achievable in $p$ passes turn out to be $Θ_p(\min\{n^{1/(p+1)}, \varepsilon^{-1/p}\})$. Our lower bounds are based on a construction of a family of high-rank incidence geometries, which may be thought of as vast generalisations of affine planes. This construction, based on algebraic techniques, appears flexible enough to find other applications and is therefore interesting in its own right.

cs.CC↗

arXiv2013

Large-Scale Pattern Search Using Reduced-Space On-Disk Suffix Arrays

The suffix array is an efficient data structure for in-memory pattern search. Suffix arrays can also be used for external-memory pattern search, via two-level structures that use an internal index to identify the correct block of suffix pointers. In this paper we describe a new two-level suffix array-based index structure that requires significantly less disk space than previous approaches. Key to the saving is the use of disk blocks that are based on prefixes rather than the more usual uniform-sampling approach, allowing reductions between blocks and subparts of other blocks. We also describe a new in-memory structure based on a condensed BWT string, and show that it allows common patterns to be resolved without access to the text. Experiments using 64 GB of English web text and a laptop computer with just 4 GB of main memory demonstrate the speed and versatility of the new approach. For this data the index is around one- third the size of previous two-level mechanisms; and the memory footprint of as little as 1% of the text size means that queries can be processed more quickly than is possible with a compact FM-INDEX.

cs.DS↗