arXiv subjects

Antonio Jimeno Yepes

Publications and source records attributed to Antonio Jimeno Yepes.

24 records · Page 2Linked to original sources

arXiv2018

Confidence penalty, annealing Gaussian noise and zoneout for biLSTM-CRF networks for named entity recognition

Named entity recognition (NER) is used to identify relevant entities in text. A bidirectional LSTM (long short term memory) encoder with a neural conditional random fields (CRF) decoder (biLSTM-CRF) is the state of the art methodology. In this work, we have done an analysis of several methods that intend to optimize the performance of networks based on this architecture, which in some cases encourage overfitting avoidance. These methods target exploration of parameter space, regularization of LSTMs and penalization of confident output distributions. Results show that the optimization methods improve the performance of the biLSTM-CRF NER baseline system, setting a new state of the art performance for the CoNLL-2003 Spanish set with an F1 of 87.18.

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arXiv2017

Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings

Biomedical word sense disambiguation (WSD) is an important intermediate task in many natural language processing applications such as named entity recognition, syntactic parsing, and relation extraction. In this paper, we employ knowledge-based approaches that also exploit recent advances in neural word/concept embeddings to improve over the state-of-the-art in biomedical WSD using the MSH WSD dataset as the test set. Our methods involve weak supervision - we do not use any hand-labeled examples for WSD to build our prediction models; however, we employ an existing well known named entity recognition and concept mapping program, MetaMap, to obtain our concept vectors. Over the MSH WSD dataset, our linear time (in terms of numbers of senses and words in the test instance) method achieves an accuracy of 92.24% which is an absolute 3% improvement over the best known results obtained via unsupervised or knowledge-based means. A more expensive approach that we developed relies on a nearest neighbor framework and achieves an accuracy of 94.34%. Employing dense vector representations learned from unlabeled free text has been shown to benefit many language processing tasks recently and our efforts show that biomedical WSD is no exception to this trend. For a complex and rapidly evolving domain such as biomedicine, building labeled datasets for larger sets of ambiguous terms may be impractical. Here, we show that weak supervision that leverages recent advances in representation learning can rival supervised approaches in biomedical WSD. However, external knowledge bases (here sense inventories) play a key role in the improvements achieved.

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arXiv2017

Named Entity Recognition with stack residual LSTM and trainable bias decoding

Recurrent Neural Network models are the state-of-the-art for Named Entity Recognition (NER). We present two innovations to improve the performance of these models. The first innovation is the introduction of residual connections between the Stacked Recurrent Neural Network model to address the degradation problem of deep neural networks. The second innovation is a bias decoding mechanism that allows the trained system to adapt to non-differentiable and externally computed objectives, such as the entity-based F-measure. Our work improves the state-of-the-art results for both Spanish and English languages on the standard train/development/test split of the CoNLL 2003 Shared Task NER dataset.

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arXiv2017

Improving classification accuracy of feedforward neural networks for spiking neuromorphic chips

Deep Neural Networks (DNN) achieve human level performance in many image analytics tasks but DNNs are mostly deployed to GPU platforms that consume a considerable amount of power. New hardware platforms using lower precision arithmetic achieve drastic reductions in power consumption. More recently, brain-inspired spiking neuromorphic chips have achieved even lower power consumption, on the order of milliwatts, while still offering real-time processing. However, for deploying DNNs to energy efficient neuromorphic chips the incompatibility between continuous neurons and synaptic weights of traditional DNNs, discrete spiking neurons and synapses of neuromorphic chips need to be overcome. Previous work has achieved this by training a network to learn continuous probabilities, before it is deployed to a neuromorphic architecture, such as IBM TrueNorth Neurosynaptic System, by random sampling these probabilities. The main contribution of this paper is a new learning algorithm that learns a TrueNorth configuration ready for deployment. We achieve this by training directly a binary hardware crossbar that accommodates the TrueNorth axon configuration constrains and we propose a different neuron model. Results of our approach trained on electroencephalogram (EEG) data show a significant improvement with previous work (76% vs 86% accuracy) while maintaining state of the art performance on the MNIST handwritten data set.

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arXiv2016

Word embeddings and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation

Word sense disambiguation helps identifying the proper sense of ambiguous words in text. With large terminologies such as the UMLS Metathesaurus ambiguities appear and highly effective disambiguation methods are required. Supervised learning algorithm methods are used as one of the approaches to perform disambiguation. Features extracted from the context of an ambiguous word are used to identify the proper sense of such a word. The type of features have an impact on machine learning methods, thus affect disambiguation performance. In this work, we have evaluated several types of features derived from the context of the ambiguous word and we have explored as well more global features derived from MEDLINE using word embeddings. Results show that word embeddings improve the performance of more traditional features and allow as well using recurrent neural network classifiers based on Long-Short Term Memory (LSTM) nodes. The combination of unigrams and word embeddings with an SVM sets a new state of the art performance with a macro accuracy of 95.97 in the MSH WSD data set.

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arXiv2016

Improving energy efficiency and classification accuracy of neuromorphic chips by learning binary synaptic crossbars

Deep Neural Networks (DNN) have achieved human level performance in many image analytics tasks but DNNs are mostly deployed to GPU platforms that consume a considerable amount of power. Brain-inspired spiking neuromorphic chips consume low power and can be highly parallelized. However, for deploying DNNs to energy efficient neuromorphic chips the incompatibility between continuous neurons and synaptic weights of traditional DNNs, discrete spiking neurons and synapses of neuromorphic chips has to be overcome. Previous work has achieved this by training a network to learn continuous probabilities and deployment to a neuromorphic architecture by random sampling these probabilities. An ensemble of sampled networks is needed to approximate the performance of the trained network. In the work presented in this paper, we have extended previous research by directly learning binary synaptic crossbars. Results on MNIST show that better performance can be achieved with a small network in one time step (92.7% maximum observed accuracy vs 95.98% accuracy in our work). Top results on a larger network are similar to previously published results (99.42% maximum observed accuracy vs 99.45% accuracy in our work). More importantly, in our work a smaller ensemble is needed to achieve similar or better accuracy than previous work, which translates into significantly decreased energy consumption for both networks. Results of our work are stable since they do not require random sampling.

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