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Antonio Lamura

Publications and source records attributed to Antonio Lamura.

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Universal scaling of conformations of tangentially driven ring polymers

The interplay of tangential activity and excluded-volume interactions in ring polymers adsorbed to a surface, consistently results in the overall swelling of the ring configurations. This is in strong contrast to the case for three dimensional linear and ring polymers, where activity induces frequently collapsed structures. By means of Brownian Dynamic simulations, we investigate how the scaling properties of such active rings can be universally characterized by an activity-dependent Flory exponent, as a generalization of the equilibrium behavior. At high activity, an effective persistence length characterizes the conformations of active flexible rings.

cond-mat.soft

Growth regimes in three-dimensional phase separation of liquid-vapor systems

The liquid-vapor phase separation is investigated via lattice Boltzmann simulations in three dimensions. After expressing length and time scales in reduced physical units, we combined data from several large simulations (on $512^3$ nodes), with different values of viscosity, surface tension and temperature, to obtain a single curve of rescaled length $\hat{l}$ as a function of rescaled time $\hat{t}$. We find evidence of the existence of kinetic and inertial regimes with growth exponents $α_d=1/2$ and $α_i=2/3$ over several time decades, with a crossover from $α_d$ to $α_i$ at $\hat{t} \simeq 1$. This allows us to rule out the existence of a viscous regime with $α_v=1$ in three-dimensional liquid-vapor isothermal phase separation, differently from what happens in binary fluid mixtures. An in-depth analysis of the kinetics of the phase separation process, as well as a characterization of the morphology and the flow properties, are further presented in order to provide clues into the dynamics of the phase-separation process.

cond-mat.soft

Hydrodynamic effects on the liquid-hexatic transition of active colloids

We study numerically the role of hydrodynamics in the liquid-hexatic transition of active colloids at intermediate activity, where motility induced phase separation (MIPS) does not occur. We show that in the case of active Brownian particles (ABP), the critical density of the transition decreases upon increasing the particle's mass, enhancing ordering, while self-propulsion has the opposite effect in the activity regime considered. Active hydrodynamic particles (AHP), instead, undergo the liquid-hexatic transition at higher values of packing fraction $ϕ$ than the corresponding ABP, suggesting that hydrodynamics have the net effect of disordering the system. At increasing densities, close to the hexatic-liquid transition, we found in the case of AHP the appearance of self-sustained organized motion with clusters of particles moving coherently.

cond-mat.stat-mech

Wall-anchored semiflexible polymer under large amplitude oscillatory shear flow

The properties of semiflexible polymers tethered by one end to an impenetrable wall and exposed to oscillatory shear flow are investigated by mesoscale simulations. A polymer, confined in two dimensions, is described by a linear bead-spring chain, and fluid interactions are incorporated by the Brownian multiparticle collision dynamics approach. At small strains, the polymers follow the applied flow field. However, at high strain, we find a strongly nonlinear response, with major conformational changes. Polymers are stretched along the flow direction and exhibit U-shaped conformations while following the flow. As a consequence of confinement in the half-space, a frequency doubling in the time-dependent polymer properties appears along the direction normal to the wall.

cond-mat.soft

Tethered Semiflexible Polymer under Large Amplitude Oscillatory Shear

The properties of a semiflexible polymer with fixed ends exposed to oscillatory shear flow are investigated by simulations. The two-dimensionally confined polymer is modeled as a linear bead-spring chain, and the interaction with the fluid is described by the Brownian multiparticle collision dynamics approach. For small shear rates, the tethering of the ends leads to a more-or-less linear oscillatory response. However, at high shear rates, we found a strongly nonlinear reaction, with a polymer (partially) wrapped around the fixation points. This leads to an overall shrinkage of the polymer. Dynamically, the location probability of the polymer center-of-mass position is largest on a spatial curve resembling a limaçon, although with an inhomogeneous distribution. We found shear-induced modifications of the normal-mode correlation functions, with a frequency doubling at high shear rates. Interestingly, an even-odd asymmetry for the Cartesian components of the correlation functions appears, with rather similar spectra for odd $x$- and even $y$-modes and vice versa. Overall, our simulations yielded an intriguing nonlinear behavior of tethered semiflexible polymers under oscillatory shear flow.

cond-mat.soft

Rheology of active emulsions with negative effective viscosity

We numerically study by lattice Boltzmann simulations the rheological properties of an active emulsion made of a suspension of an active polar gel embedded in an isotropic passive background. We find that the hexatic equilibrium configuration of polar droplets is highly sensitive to both active injection and external forcing and may either lead to asymmetric unidirectional states which break top-bottom symmetry or symmetric ones. In this latter case, for large enough activity, the system develops a shear-thickening regime at low shear rates. Importantly, for larger external forcing a regime with stable negative effective viscosity is found. Moreover, at intermediate activity a region of multistability is encountered and we show that a maximum entropy production principle holds in selecting the most favorable state.

cond-mat.soft

Lattice Boltzmann Methods and Active Fluids

We review the state of the art of active fluids with particular attention to hydrodynamic continuous models and to the use of Lattice Boltzmann Methods (LBM) in this field. We present the thermodynamics of active fluids, in terms of liquid crystals modelling adapted to describe large-scale organization of active systems, as well as other effective phenomenological models. We discuss how LBM can be implemented to solve the hydrodynamics of active matter, starting from the case of a simple fluid, for which we explicitly recover the continuous equations by means of Chapman-Enskog expansion. Going beyond this simple case, we summarize how LBM can be used to treat complex and active fluids. We then review recent developments concerning some relevant topics in active matter that have been studied by means of LBM: spontaneous flow, self-propelled droplets, active emulsions, rheology, active turbulence, and active colloids.

cond-mat.soft

Rheology of active polar emulsions: from linear to unidirectional and unviscid flow, and intermittent viscosity

The rheological behaviour of an emulsion made of an active polar component and an isotropic passive fluid is studied by lattice Boltzmann methods. Different flow regimes are found by varying the values of shear rate and extensile activity (occurring, e.g., in microtubule-motor suspensions). By increasing activity, a first transition occurs from linear flow regime to spontaneous persistent unidirectional macro-scale flow, followed by another transition either to (low shear) intermittent flow regime with coexistence of states with positive, negative, and vanishing apparent viscosity, or to (high shear) symmetric shear thinning regime. The different behaviours can be explained in terms of the dynamics of the polarization field close to the walls. A maximum entropy production principle selects the most likely states in the intermittent regime.

cond-mat.soft

Dynamically asymmetric and bicontinuous morphologies in active emulsions

The morphology of a mixture made of a polar active gel immersed in an isotropic passive fluid is studied numerically. Lattice Boltzmann method is adopted to solve the Navier-Stokes equation and coupled to a finite-difference scheme used to integrate the dynamic equations of the concentration and of the polarization of the active component. By varying the relative amounts of the mixture phases, different structures can be observed. In the contractile case, at moderate values of activity, elongated structures are formed when the active component is less abundant, while a dynamic emulsion of passive droplets in an active matrix is obtained for symmetric composition. When the active component is extensile, aster-like rotating droplets and a phase-separated pattern appear for asymmetric and symmetric mixtures, respectively. The relevance of space dimensions in the overall morphology is shown by studying the system in three dimensions in the case of extensile asymmetric mixtures where interconnected tube-like structures span the whole system.

cond-mat.soft

Comparison between isothermal collision-streaming and finite-difference lattice Boltzmann models

We present here a comparison between collision-streaming and finite-difference lattice Boltzmann (LB) models. This study provides a derivation of useful formulae which help one to properly compare the simulation results obtained with both LB models. We consider three physical problems: the shock wave propagation, the damping of shear waves, and the decay of Taylor-Green vortices, often used as benchmark tests. Despite the different mathematical and computational complexity of the two methods, we show how the physical results can be related to obtain relevant quantities.

physics.comp-ph

Morphology and flow patterns in highly asymmetric active emulsions

We investigate numerically, by a hybrid lattice Boltzmann method, the morphology and the dynamics of an emulsion made of a polar active gel, contractile or extensile, and an isotropic passive fluid. We focus on the case of a highly off-symmetric ratio between the active and passive components. In absence of any activity we observe an hexatic-ordered droplets phase, with some defects in the layout. We study how the morphology of the system is affected by activity both in the contractile and extensile case. In the extensile case a small amount of activity favors the elimination of defects in the array of droplets, while at higher activities, first aster-like rotating droplets appear, and then a disordered pattern occurs. In the contractile case, at sufficiently high values of activity, elongated structures are formed. Energy and enstrophy behavior mark the transitions between the different regimes.

cond-mat.soft

Rheology of an inverted cholesteric droplet under shear flow

The dynamics of a quasi two-dimensional isotropic droplet in a cholesteric liquid crystal medium under symmetric shear flow is studied by lattice Boltzmann simulations. We consider a geometry in which the flow direction is along the axis of the cholesteric, as this setup exhibits a significant viscoelastic response to external stress. We find that the dynamics depends upon the magnitude of the shear rate, the anchoring strength of the liquid crystal at the droplet interface and the chirality. While for low shear rate and weak interface anchoring the system shows a non-Newtonian behavior, a Newtonian-like response is observed at high shear rate and strong interface anchoring. This is investigated both by estimating the secondary flow profile, namely a flow emerging along the out-of-plane direction (absent in fully Newtonian fluids, such as water), and by monitoring defect formation and dynamics which alter significantly the rheological response of the system.

cond-mat.soft

Long-range hydrodynamic effect due to a single vesicle in linear flow

Vesicles are involved in a vast variety of transport processes in living organisms. Additionally, they serve as a model for the dynamics of cell suspensions. Predicting the rheological properties of their suspensions is still an open question, as even the interaction of pairs is yet to be fully understood. Here we analyse the effect of a single vesicle, undergoing tank-treading motion, on its surrounding shear flow by studying the induced disturbance field $δ\vec{V}$, the difference between the velocity field in its presence and absence. The comparison between experiments and numerical simulations reveals an impressive agreement. Tracking ridges in the disturbance field magnitude landscape, we identify the principal directions along which the velocity difference field is analysed in the vesicle vicinity. The disturbance magnitude is found to be significant up to about 4 vesicles radii and can be described by a power law decay with the distance $d$ from the vesicle $ \| δ\vec{V} \| \propto d^{-3/2}$. This is consistent with previous experimental results on the separation distance between two interacting vesicles under similar conditions, for which their dynamics is altered. This is an indication of vesicles long-range effect via the disturbance field and calls for the proper incorporation of long-range hydrodynamic interactions when attempting to derive rheological properties of vesicle suspensions.

cond-mat.soft

Dynamics of a homogeneous active dumbbell system

We analyse the dynamics of a two dimensional system of interacting active dumbbells. We characterise the mean-square displacement, linear response function and deviation from the equilibrium fluctuation-dissipation theorem as a function of activity strength, packing fraction and temperature for parameters such that the system is in its homogeneous phase. While the diffusion constant in the last diffusive regime naturally increases with activity and decreases with packing fraction, we exhibit an intriguing non-monotonic dependence on the activity of the ratio between the finite density and the single particle diffusion constants. At fixed packing fraction, the time-integrated linear response function depends non-monotonically on activity strength. The effective temperature extracted from the ratio between the integrated linear response and the mean-square displacement in the last diffusive regime is always higher than the ambient temperature, increases with increasing activity and, for small active force it monotonically increases with density while for sufficiently high activity it first increases to next decrease with the packing fraction. We ascribe this peculiar effect to the existence of finite-size clusters for sufficiently high activity and density at the fixed (low) temperatures at which we worked. The crossover occurs at lower activity or density the lower the external temperature. The finite density effective temperature is higher (lower) than the single dumbbell one below (above) a cross-over value of the Peclet number.

cond-mat.stat-mech

Pattern Formation in Liquid-Vapor Systems under Periodic Potential and Shear

In this paper the phase behavior and pattern formation in a sheared non-ideal fluid under a periodic potential is studied. An isothermal two-dimensional formulation of a lattice Boltzmann scheme for a liquid-vapor system with the van der Waals equation of state is presented and validated. Shear is applied by moving walls and the periodic potential will vary along the flow direction. A region of the parameter space, where in absence of flow a striped phase with oscillating density is stable, will be considered. At low shear rates the periodic patterns are preserved and slightly distorted by the flow. At high shear rates the striped phase looses its stability and a new phase with interface waves between the liquid and vapor regions will appear. Velocity field patterns will be also shown.

physics.flu-dyn

Capillary filling with randomly coated walls

The motion of an air-fluid interface through an irregularly coated capillary is studied by analysing the Lucas-Washburn equation with a random capillary force. The pinning probability goes from zero to a maximum value, as the interface slows down. Under a critical velocity, the distribution of waiting times $τ$ displays a power-law tail $\sim τ^{-2}$ which corresponds to a strongly intermittent dynamics, also observed in experiments. We elaborate a procedure to predict quantities of experimental interest, such as the average interface trajectory and the distribution of pinning lengths.

physics.flu-dyn

Two-Dimensional Fluctuating Vesicles in Linear Shear Flow

The stochastic motion of a two-dimensional vesicle in linear shear flow is studied at finite temperature. In the limit of small deformations from a circle, Langevin-type equations of motion are derived, which are highly nonlinear due to the constraint of constant perimeter length. These equations are solved in the low temperature limit and using a mean field approach, in which the length constraint is satisfied only on average. The constraint imposes non-trivial correlations between the lowest deformation modes at low temperature. We also simulate a vesicle in a hydrodynamic solvent by using the multi-particle collision dynamics technique, both in the quasi-circular regime and for larger deformations, and compare the stationary deformation correlation functions and the time autocorrelation functions with theoretical predictions. Good agreement between theory and simulations is obtained.

cond-mat.soft