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Antonio Patrón Castro

Publications and source records attributed to Antonio Patrón Castro.

3 recordsLinked to original sources

Information-driven stepping in dimeric transport motors

Dimeric transport motors are nanoscale protein complexes that move along cytoskeletal filaments. Here we introduce a theoretical model for their stepping dynamics, in which the two motor heads undergo Brownian motion with mobilities periodically switching in a position-dependent manner so that only one head moves at a time. Through consumption of chemical free energy, this mechanism produces directed motion. We characterize at steady state the motor's mean velocity and its energy and information flows. The motor operates as a pure information engine, where only information is transduced between its components, without energy exchange. For localized switching, the model yields a thermodynamically consistent expression for the mean motor velocity that reproduces experimentally observed behavior, and captures the stall force characteristic of tightly coupled motors. Finally, coarse-graining the model to a single mechanical degree of freedom produces a second-order non-Markovian dynamics, from which we compute the four distinct dwell-time distributions that can be directly observed in single-molecule experiments. Our findings highlight how information transduction, via implicit operation as a Maxwell demon, may underlie the remarkable performance of these molecular motors.

physics.bio-ph↗

Harnessing higher-dimensional fluctuations in an information engine

We study the optimal performance of an information engine consisting of an overdamped Brownian bead confined in a controllable, $d$-dimensional harmonic trap and additionally subjected to gravity. The trap's center is updated dynamically via a feedback protocol designed such that no external work is done by the trap on the bead, while maximizing the extraction of gravitational potential energy and achieving directed motion. We show that performance strikingly improves when thermal fluctuations in directions perpendicular to gravity are harnessed. This improvement arises from feedback cooling of these transverse degrees of freedom, along which all heat is extracted; comparable performance can be achieved even without vertical measurements. This engine design modularizes the functions of harnessing fluctuations and storing free energy, drawing a close analogy to the Szilard engine.

cond-mat.stat-mech↗

Control and optimisation of irreversible processes in non-equilibrium systems

This thesis is devoted to the study of physical systems embedded within the field of non-equilibrium statistical mechanics. Specifically, the state of the systems of interest constitutes a stochastic process that can be externally driven by a set of controllable parameters. On the one hand, for systems in contact with a thermal bath, we have studied the emergence of strong memory effects and glassy behaviour upon varying the bath temperature, and how these are related to the existence of non-equilibrium attractors governing the dynamics. On the other hand, for overdamped harmonic systems, we have studied the problem of minimising the connection time between arbitrary stationary (either equilibrium or non-equilibrium) states, by suitably varying either the bath temperature or the stiffnesses of the potential.

cond-mat.stat-mech↗