arXiv subjects

Antonios Mamalakis

Publications and source records attributed to Antonios Mamalakis.

10 recordsLinked to original sources

arXiv2026

SimCast-S2S: A Computationally Efficient Diffusion Model for Subseasonal Precipitation Forecasting

Subseasonal-to-seasonal (S2S) precipitation forecasting has substantial financial and societal impact, yet remains challenging because of weak predictive signals, high associated uncertainty, and the computational cost of operational systems, which constrains simulation fidelity. We introduce SimCast-S2S, a generative latent-diffusion framework for probabilistic S2S precipitation forecasting that addresses three major bottlenecks in data-driven prediction. First, because S2S prediction requires uncertainty quantification rather than only deterministic point forecasts, SimCast-S2S is the first data-driven system that uses a diffusion-based generative pipeline for S2S prediction, enabling effective sampling from the underlying conditional distribution. Second, since generating large probabilistic ensembles is computationally costly in physical space, SimCast-S2S instead operates in a compact latent space learned by variational autoencoders (VAEs), enabling efficient large-ensemble generation. Third, diffusion models typically require large training datasets; SimCast-S2S overcomes this via transfer learning with low-rank adaptation (LoRA), pretraining on large ensembles of climate simulations before fine-tuning on limited reanalysis data. On reanalysis data, SimCast-S2S outperforms deep learning baselines, including convolutional neural networks and U-Net architectures. Notably, despite using only a subset of atmospheric input variables and no post-processing, bias correction, or calibration, SimCast-S2S remains competitive with, and in many aspects outperforms, state-of-the-art operational systems such as the ECMWF-S2S baseline. These results indicate that latent generative modeling combined with simulation-to-reanalysis transfer learning offers an efficient and scalable path toward data-driven probabilistic S2S precipitation forecasting.

cs.LG↗

arXiv2026

A continually expandable foundation model for brain MRI

Brain magnetic resonance imaging (MRI) is central to neuroscience and clinical assessment, but models are commonly developed for individual diseases, populations or imaging protocols. Foundation models promise more general representations, yet they are usually pretrained once and can lose earlier capabilities when updated with new data. Here we show that Alcmaeon, a three-dimensional brain MRI foundation model pretrained without manual labels on more than 425,000 volumes and derived imaging maps, can be expanded sequentially across clinical domains. Alcmaeon combines volumetric encoding and latent diffusion generation with Graph-Blueprint Pruning (GBP), which protects network modules important to earlier domains while leaving the remaining capacity trainable. Across expansion from healthy ageing and neurodegeneration to developmental, psychiatric and tumour imaging, GBP showed less forgetting than sequential adaptation and elastic weight consolidation across voxel-level reconstruction measures, with its largest advantage after adaptation to tumour imaging. The blueprints provided an inspectable record of how model capacity was protected and reused. Representations from different model levels supported image synthesis, disease classification, survival modelling and postoperative prediction, although no single representation was optimal for every task. These findings provide a route towards brain MRI foundation models that can grow with emerging data while retaining earlier capabilities.

cs.CV↗

arXiv2026

SynopticBench: Evaluating Vision-Language Models on Generating Weather Forecast Discussions of the Future

Recent advances in visual-language models (VLMs) have led to significant improvements in a plethora of complex multimodal tasks like image captioning, report generation, and visual perception. However, generating text from meteorological data is highly challenging because the atmosphere is a chaotic system that is rapidly changing at various spatial and temporal scales. Given the complexity of atmospheric phenomena, it is critical to verifiably quantify the effectiveness of existing VLMs on weather forecasting data. In this work, we present SynopticBench, a high-quality dataset consisting of 1,367,041 text samples of Area Forecast Discussions created by the National Weather Service over the continental United States paired to images of 500mb geopotential height, 2 meter temperature, and 850mb wind velocity in weather forecasts. We also present Synoptic Phenomena Alignment and Coverage Evaluation (SPACE), a novel evaluation framework that can be used to effectively estimate the quality of text descriptions of synoptic weather phenomena. Extensive experiments on generating forecast discussions using state-of-the-art VLMs show the sensitivity of existing evaluation metrics in this domain and enable further exploration into synoptic weather and climate text generation.

cs.CL↗

arXiv2025

Solving the enigma: Enhancing faithfulness and comprehensibility in explanations of deep networks

The accelerated progress of artificial intelligence (AI) has popularized deep learning models across various domains, yet their inherent opacity poses challenges, particularly in critical fields like healthcare, medicine, and the geosciences. Explainable AI (XAI) has emerged to shed light on these 'black box' models, aiding in deciphering their decision-making processes. However, different XAI methods often produce significantly different explanations, leading to high inter-method variability that increases uncertainty and undermines trust in deep networks' predictions. In this study, we address this challenge by introducing a novel framework designed to enhance the explainability of deep networks through a dual focus on maximizing both accuracy and comprehensibility in the explanations. Our framework integrates outputs from multiple established XAI methods and leverages a non-linear neural network model, termed the 'explanation optimizer,' to construct a unified, optimal explanation. The optimizer evaluates explanations using two key metrics: faithfulness (accuracy in reflecting the network's decisions) and complexity (comprehensibility). By balancing these, it provides accurate and accessible explanations, addressing a key XAI limitation. Experiments on multi-class and binary classification in 2D object and 3D neuroscience imaging confirm its efficacy. Our optimizer achieved faithfulness scores 155% and 63% higher than the best XAI methods in 3D and 2D tasks, respectively, while also reducing complexity for better understanding. These results demonstrate that optimal explanations based on specific quality criteria are achievable, offering a solution to the issue of inter-method variability in the current XAI literature and supporting more trustworthy deep network predictions

cs.CV↗

arXiv2023

Artificial Intelligence for Prediction of Climate Extremes: State of the art, challenges and future perspectives

Scientific and technological advances in numerical modelling have improved the quality of climate predictions over recent decades, but predictive skill remains limited in many aspects. Extreme events such as heat and cold waves, droughts, heavy rain and storms are particularly challenging to predict accurately due to their rarity and non-linear chaotic nature, and because of model limitations. However, recent studies have shown that predictive skill of extremes can be increased when using more sophisticated approaches, indicating that there might be systemic predictability that is not being leveraged. Recently, numerous studies have been devoted to the exploitation of Artificial Intelligence (AI) to study the predictability and make predictions of weather and climate. AI techniques have shown great potential to improve the prediction of extreme events and uncover their links to large-scale and local drivers. Machine and deep learning, causal discovery, explainable AI, are only some of the approaches that have been tested to both improve our understanding of the processes underlying predictability and enhance prediction skill of extreme events. Results are promising, especially for hybrid predictions that combine the AI, which can reveal and exploit unknown spatio-temporal connections from data, and climate models, that provide the theoretical foundation and interpretability of the physical world. On the other hand, challenges are multiple in many aspects, from data curation to model uncertainty and generalizability, to the reproducibility of methods and workflows. A few best practices are identified to increase trust in these novel techniques, and future perspectives are envisaged for further scientific development.

physics.ao-ph↗

arXiv2022

Investigating the fidelity of explainable artificial intelligence methods for applications of convolutional neural networks in geoscience

Convolutional neural networks (CNNs) have recently attracted great attention in geoscience due to their ability to capture non-linear system behavior and extract predictive spatiotemporal patterns. Given their black-box nature however, and the importance of prediction explainability, methods of explainable artificial intelligence (XAI) are gaining popularity as a means to explain the CNN decision-making strategy. Here, we establish an intercomparison of some of the most popular XAI methods and investigate their fidelity in explaining CNN decisions for geoscientific applications. Our goal is to raise awareness of the theoretical limitations of these methods and gain insight into the relative strengths and weaknesses to help guide best practices. The considered XAI methods are first applied to an idealized attribution benchmark, where the ground truth of explanation of the network is known a priori, to help objectively assess their performance. Secondly, we apply XAI to a climate-related prediction setting, namely to explain a CNN that is trained to predict the number of atmospheric rivers in daily snapshots of climate simulations. Our results highlight several important issues of XAI methods (e.g., gradient shattering, inability to distinguish the sign of attribution, ignorance to zero input) that have previously been overlooked in our field and, if not considered cautiously, may lead to a distorted picture of the CNN decision-making strategy. We envision that our analysis will motivate further investigation into XAI fidelity and will help towards a cautious implementation of XAI in geoscience, which can lead to further exploitation of CNNs and deep learning for prediction problems.

physics.geo-ph↗

arXiv2022

Carefully choose the baseline: Lessons learned from applying XAI attribution methods for regression tasks in geoscience

Methods of eXplainable Artificial Intelligence (XAI) are used in geoscientific applications to gain insights into the decision-making strategy of Neural Networks (NNs) highlighting which features in the input contribute the most to a NN prediction. Here, we discuss our lesson learned that the task of attributing a prediction to the input does not have a single solution. Instead, the attribution results and their interpretation depend greatly on the considered baseline (sometimes referred to as reference point) that the XAI method utilizes; a fact that has been overlooked so far in the literature. This baseline can be chosen by the user or it is set by construction in the method s algorithm, often without the user being aware of that choice. We highlight that different baselines can lead to different insights for different science questions and, thus, should be chosen accordingly. To illustrate the impact of the baseline, we use a large ensemble of historical and future climate simulations forced with the SSP3-7.0 scenario and train a fully connected NN to predict the ensemble- and global-mean temperature (i.e., the forced global warming signal) given an annual temperature map from an individual ensemble member. We then use various XAI methods and different baselines to attribute the network predictions to the input. We show that attributions differ substantially when considering different baselines, as they correspond to answering different science questions. We conclude by discussing some important implications and considerations about the use of baselines in XAI research.

physics.geo-ph↗

arXiv2022

Neural Network Attribution Methods for Problems in Geoscience: A Novel Synthetic Benchmark Dataset

Despite the increasingly successful application of neural networks to many problems in the geosciences, their complex and nonlinear structure makes the interpretation of their predictions difficult, which limits model trust and does not allow scientists to gain physical insights about the problem at hand. Many different methods have been introduced in the emerging field of eXplainable Artificial Intelligence (XAI), which aim at attributing the network s prediction to specific features in the input domain. XAI methods are usually assessed by using benchmark datasets (like MNIST or ImageNet for image classification). However, an objective, theoretically derived ground truth for the attribution is lacking for most of these datasets, making the assessment of XAI in many cases subjective. Also, benchmark datasets specifically designed for problems in geosciences are rare. Here, we provide a framework, based on the use of additively separable functions, to generate attribution benchmark datasets for regression problems for which the ground truth of the attribution is known a priori. We generate a large benchmark dataset and train a fully connected network to learn the underlying function that was used for simulation. We then compare estimated heatmaps from different XAI methods to the ground truth in order to identify examples where specific XAI methods perform well or poorly. We believe that attribution benchmarks as the ones introduced herein are of great importance for further application of neural networks in the geosciences, and for more objective assessment and accurate implementation of XAI methods, which will increase model trust and assist in discovering new science.

physics.geo-ph↗

arXiv2020

Zonally opposing shifts of the intertropical convergence zone in response to climate change

Future changes in the location of the intertropical convergence zone (ITCZ) due to climate change are of high interest since they could substantially alter precipitation patterns in the tropics and subtropics. Although models predict a future narrowing of the ITCZ during the 21st century in response to climate warming, uncertainties remain large regarding its future position, with most past work focusing on the zonal-mean ITCZ shifts. Here we use projections from 27 state-of-the-art climate models (CMIP6) to investigate future changes in ITCZ location as a function of longitude and season, in response to climate warming. We document a robust zonally opposing response of the ITCZ, with a northward shift over eastern Africa and the Indian Ocean, and a southward shift in the eastern Pacific and Atlantic Ocean by 2100, for the SSP3-7.0 scenario. Using a two-dimensional energetics framework, we find that the revealed ITCZ response is consistent with future changes in the divergent atmospheric energy transport over the tropics, and sector-mean shifts of the energy flux equator (EFE). The changes in the EFE appear to be the result of zonally opposing imbalances in the hemispheric atmospheric heating over the two sectors, consisting of increases in atmospheric heating over Eurasia and cooling over the Southern Ocean, which contrast with atmospheric cooling over the North Atlantic Ocean due to a model-projected weakening of the Atlantic meridional overturning circulation.

physics.ao-ph↗

arXiv2020

Rotated spectral principal component analysis (rsPCA) for identifying dynamical modes of variability in climate systems

Spectral PCA (sPCA), in contrast to classical PCA, offers the advantage of identifying organized spatio-temporal patterns within specific frequency bands and extracting dynamical modes. However, the unavoidable tradeoff between frequency resolution and robustness of the PCs leads to high sensitivity to noise and overfitting, which limits the interpretation of the sPCA results. We propose herein a simple non-parametric implementation of the sPCA using the continuous analytic Morlet wavelet as a robust estimator of the cross-spectral matrices with good frequency resolution. To improve the interpretability of the results when several modes of similar amplitude exist within the same frequency band, we propose a rotation of eigenvectors that optimizes the spatial smoothness in the phase domain. The developed method, called rotated spectral PCA (rsPCA), is tested on synthetic data simulating propagating waves and shows impressive performance even with high levels of noise in the data. Applied to historical sea surface temperature (SST) time series over the Pacific Ocean, the method accurately captures the El Niño-Southern Oscillation (ENSO) at low frequency (2 to 7 years periodicity). At high frequencies (sub-annual periodicity), at which several extratropical patterns of similar amplitude are identified, the rsPCA successfully unmixes the underlying modes, revealing spatially coherent patterns with robust propagation dynamics. Identification of higher frequency space-time climate modes holds promise for seasonal to subseasonal prediction and for diagnostic analysis of climate models.

eess.SY↗