SearcharxivSearch

arXiv subjects

Antony Lee

Publications and source records attributed to Antony Lee.

2 recordsLinked to original sources

A Binary Annular Phase Mask to Regulate Spherical Aberration and Allow Super-Localization in Single-Particle Tracking over Extended Depth-of-Focus

Important applications of single-particle tracking (SPT) aim at deciphering the diffusion properties of single fluorescent nanoparticles immersed in heterogeneous environments, such as multi-cellular biological tissues. To maximize the particle localization precision in such complex environments, high numerical aperture objectives are often required, which intrinsically restrict depth-of-focus (DOF) to less than a micrometer and impedes recording long trajectories when particles escape the plane of focus. In this work, we show that a simple binary phase mask can work with the spherical aberration inevitably induced by thick sample inhomogeneities, to extend the DOF of a single-molecule fluorescence microscope over more than 4 μm. The effect of point-spread-function (PSF) engineering over spherical aberration regularizes inhomogeneities of the PSF along the optical axis by restricting it to a narrow distribution. This allows the use of a single fitting function (i.e. Gaussian function) to localize single emitters over the whole extended DOF. Application of this simple approach on diffusing nanoparticles demonstrate that SPT trajectories can be recorded on significantly longer times.

physics.optics

The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package

The Astropy Project supports and fosters the development of open-source and openly-developed Python packages that provide commonly needed functionality to the astronomical community. A key element of the Astropy Project is the core package $\texttt{astropy}$, which serves as the foundation for more specialized projects and packages. In this article, we summarize key features in the core package as of the recent major release, version 5.0, and provide major updates for the Project. We then discuss supporting a broader ecosystem of interoperable packages, including connections with several astronomical observatories and missions. We also revisit the future outlook of the Astropy Project and the current status of Learn Astropy. We conclude by raising and discussing the current and future challenges facing the Project.

astro-ph.IM