arXiv subjects

Antti Vehkaoja

Publications and source records attributed to Antti Vehkaoja.

5 recordsLinked to original sources

arXiv2026

Extracting Patterns of Chemical Information from Differential Mobility Spectrometry Measurements under Varying Conditions of Humidity and Temperature

Differential Mobility Spectrometry (DMS), also known as Field Asymmetric Ion Mobility Spectrometry, is a rapid and affordable technology for extracting information from gas phase samples containing complex volatile organic compounds, and can therefore be used for analyzing surgical smoke. One obstacle to its widespread application is the dependence of DMS measurements on humidity and, to a lesser degree, temperature, making comparison of data measured under different environmental conditions arbitrary. The commonly used solution is to regulate these environmental conditions to some predefined humidity and temperature levels. However, this approach is often unfeasible or even impossible. Therefore, in this paper we analyzed a dataset of 1,852 DMS measurements of surgical smoke evaporated from porcine adipose and muscle tissue to get an understanding of the impact of varying humidity and temperature on DMS measurements. Our analysis confirmed clear dependence of the measurements on these two factors. To overcome this challenge, we fitted regression models to raw and normalized DMS measurement data. Subsequently, these models were used for estimating DMS measurements for known tissue types based on recorded humidity and temperatures. Our test suggests that it is possible to estimate DMS measurements of surgical smoke from porcine adipose and muscle tissue under specific environmental conditions by standardizing DMS measurements separation voltage-wise and training multivariate regression models on the normalized data, which is the first step in removing the need for standardized measurement conditions.

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arXiv2024

A benchmark for computational analysis of animal behavior, using animal-borne tags

Animal-borne sensors (`bio-loggers') can record a suite of kinematic and environmental data, which are used to elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are used for interpreting the large amounts of data recorded by bio-loggers, but there exists no common framework for comparing the different machine learning techniques in this domain. This makes it difficult to, for example, identify patterns in what works well for machine learning-based analysis of bio-logger data. It also makes it difficult to evaluate the effectiveness of novel methods developed by the machine learning community. To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, as well as a modeling task and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type. Using BEBE, we compare the performance of deep and classical machine learning methods for identifying animal behaviors based on bio-logger data. As an example usage of BEBE, we test an approach based on self-supervised learning. To apply this approach to animal behavior classification, we adapt a deep neural network pre-trained with 700,000 hours of data collected from human wrist-worn accelerometers. We find that deep neural networks out-perform the classical machine learning methods we tested across all nine datasets in BEBE. We additionally find that the approach based on self-supervised learning out-performs the alternatives we tested, especially in settings when there is a low amount of training data available. In light of this, we are able to make concrete suggestions for designing studies that rely on machine learning to infer behavior from bio-logger data. Datasets and code are available at https://github.com/earthspecies/BEBE.

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arXiv2024

Classification of Volatile Organic Compounds by Differential Mobility Spectrometry Based on Continuity of Alpha Curves

Background: Classification of volatile organic compounds (VOCs) is of interest in many fields. Examples include but are not limited to medicine, detection of explosives, and food quality control. Measurements collected with electronic noses can be used for classification and analysis of VOCs. One type of electronic noses that has seen considerable development in recent years is Differential Mobility Spectrometry (DMS). DMS yields measurements that are visualized as dispersion plots that contain traces, also known as alpha curves. Current methods used for analyzing DMS dispersion plots do not usually utilize the information stored in the continuity of these traces, which suggests that alternative approaches should be investigated. Results: In this work, for the first time, dispersion plots were interpreted as a series of measurements evolving sequentially. Thus, it was hypothesized that time-series classification algorithms can be effective for classification and analysis of dispersion plots. An extensive dataset of 900 dispersion plots for five chemicals measured at five flow rates and two concentrations was collected. The data was used to analyze the classification performance of six algorithms. According to our hypothesis, the highest classification accuracy of 88\% was achieved by a Long-Short Term Memory neural network, which supports our hypothesis. Significance: A new concept for approaching classification tasks of dispersion plots is presented and compared with other well-known classification algorithms. This creates a new angle of view for analysis and classification of the dispersion plots. In addition, a new dataset of dispersion plots is openly shared to public.

cs.LG↗

arXiv2022

Signal-to-noise ratio is more important than sampling rate in beat-to-beat interval estimation from optical sensors

Photoplethysmographic Imaging (PPGI) allows the determination of pulse rate variability from sequential beat-to-beat intervals (BBI) and pulse wave velocity from spatially resolved recorded pulse waves. In either case, sufficient temporal accuracy is essential. The presented work investigates the temporal accuracy of BBI estimation from photoplethysmographic signals. Within comprehensive numerical simulation, we systematically assess the impact of sampling rate, signal-to-noise ratio (SNR), and beat-to-beat shape variations on the root mean square error (RMSE) between real and estimated BBI. Our results show that at sampling rates beyond 14 Hz only small errors exist when interpolation is used. For example, the average RMSE is 3 ms for a sampling rate of 14 Hz and an SNR of 18 dB. Further increasing the sampling rate only results in marginal improvements, e.g. more than tripling the sampling rate to 50 Hz reduces the error by approx. 14%. The most important finding relates to the SNR, which is shown to have a much stronger influence on the error than the sampling rate. For example, increasing the SNR from 18 dB to 24 dB at 14 Hz sampling rate reduced the error by almost 50% to 1.5 ms. Subtle beat-to-beat shape variations, moreover, increase the error decisively by up to 800%. Our results are highly relevant in three regards: first, they partially explain different results in the literature on minimum sampling rates. Second, they emphasize the importance to consider SNR and possibly shape variation in investigations on the minimal sampling rate. Third, they underline the importance of appropriate processing techniques to increase SNR. Importantly, though our motivation is PPGI, the presented work immediately applies to contact PPG and PPG in other settings such as wearables. To enable further investigations, we make the scripts used in modelling and simulation freely available.

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arXiv2017

Detection of Beat-to-Beat Intervals from Wrist Photoplethysmography in Patients with Sinus Rhythm and Atrial Fibrillation after Surgery

Wrist photoplethysmography (PPG) allows unobtrusive monitoring of the heart rate (HR). PPG is affected by the capillary blood perfusion and the pumping function of the heart, which generally deteriorate with age and due to presence of cardiac arrhythmia. The performance of wrist PPG in monitoring beat-to-beat HR in older patients with arrhythmia has not been reported earlier. We monitored PPG from wrist in 18 patients recovering from surgery in the post anesthesia care unit, and evaluated the inter-beat interval (IBI) detection accuracy against ECG based R-to-R intervals (RRI). Nine subjects had sinus rhythm (SR, 68.0y$\pm$10.2y, 6 males) and nine subjects had atrial fibrillation (AF, 71.3y$\pm$7.8y, 4 males) during the recording. For the SR group, 99.44% of the beats were correctly identified, 2.39% extra beats were detected, and the mean absolute error (MAE) was 7.34 ms. For the AF group, 97.49% of the heartbeats were correctly identified, 2.26% extra beats were detected, and the MAE was 14.31 ms. IBI from the PPG were hence in close agreement with the ECG reference in both groups. The results suggest that wrist PPG provides a comfortable alternative to ECG and can be used for long-term monitoring and screening of AF episodes.

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