arXiv subjects

Arkajyoti Saha

Publications and source records attributed to Arkajyoti Saha.

4 recordsLinked to original sources

arXiv2025

Random forests for binary geospatial data

The manuscript develops new method and theory for non-linear regression for binary dependent data using random forests. Existing implementations of random forests for binary data cannot explicitly account for data correlation common in geospatial and time-series settings. For continuous outcomes, recent work has extended random forests (RF) to RF-GLS that incorporate spatial covariance using the generalized least squares (GLS) loss. However, adoption of this idea for binary data is challenging due to the use of the Gini impurity measure in classification trees, which has no known extension to model dependence. We show that for binary data, the GLS loss is also an extension of the Gini impurity measure, as the latter is exactly equivalent to the ordinary least squares (OLS) loss. This justifies using RF-GLS for non-parametric mean function estimation for binary dependent data. We then consider the special case of generalized mixed effects models, the traditional statistical model for binary geospatial data, which models the spatial random effects as a Gaussian process (GP). We propose a novel link-inversion technique that embeds the RF-GLS estimate of the mean function from the first step within the generalized mixed effects model framework, enabling estimation of non-linear covariate effects and offering spatial predictions. We establish consistency of our method, RF-GP, for both mean function and covariate effect estimation. The theory holds for a general class of stationary absolutely regular dependent processes that includes common choices like Gaussian processes with Matérn or compactly supported covariances and autoregressive processes. The theory relaxes the common assumption of additive mean functions and accounts for the non-linear link. We demonstrate that RF-GP outperforms competing methods for estimation and prediction in both simulated and real-world data.

stat.ME↗

arXiv2024

Heterogeneous Transfer Learning for Building High-Dimensional Generalized Linear Models with Disparate Datasets

Development of comprehensive prediction models are often of great interest in many disciplines of science, but datasets with information on all desired features often have small sample sizes. We describe a transfer learning approach for building high-dimensional generalized linear models using data from a main study with detailed information on all predictors and an external, potentially much larger, study that has ascertained a more limited set of predictors. We propose using the external dataset to build a reduced model and then "transfer" the information on underlying parameters for the analysis of the main study through a set of calibration equations which can account for the study-specific effects of design variables. We then propose a penalized generalized method of moment framework for inference and a one-step estimation method that could be implemented using standard glmnet package. We develop asymptotic theory and conduct extensive simulation studies to investigate both predictive performance and post-selection inference properties of the proposed method. Finally, we illustrate an application of the proposed method for the development of risk models for five common diseases using the UK Biobank study, combining information on low-dimensional risk factors and high throughout proteomic biomarkers.

stat.ME↗

arXiv2022

Inferring independent sets of Gaussian variables after thresholding correlations

We consider testing whether a set of Gaussian variables, selected from the data, is independent of the remaining variables. We assume that this set is selected via a very simple approach that is commonly used across scientific disciplines: we select a set of variables for which the correlation with all variables outside the set falls below some threshold. Unlike other settings in selective inference, failure to account for the selection step leads, in this setting, to excessively conservative (as opposed to anti-conservative) results. Our proposed test properly accounts for the fact that the set of variables is selected from the data, and thus is not overly conservative. To develop our test, we condition on the event that the selection resulted in the set of variables in question. To achieve computational tractability, we develop a new characterization of the conditioning event in terms of the canonical correlation between the groups of random variables. In simulation studies and in the analysis of gene co-expression networks, we show that our approach has much higher power than a ``naive'' approach that ignores the effect of selection.

stat.ME↗

arXiv2021

Random Forests for dependent data

Random forest (RF) is one of the most popular methods for estimating regression functions. The local nature of the RF algorithm, based on intra-node means and variances, is ideal when errors are i.i.d. For dependent error processes like time series and spatial settings where data in all the nodes will be correlated, operating locally ignores this dependence. Also, RF will involve resampling of correlated data, violating the principles of bootstrap. Theoretically, consistency of RF has been established for i.i.d. errors, but little is known about the case of dependent errors. We propose RF-GLS, a novel extension of RF for dependent error processes in the same way Generalized Least Squares (GLS) fundamentally extends Ordinary Least Squares (OLS) for linear models under dependence. The key to this extension is the equivalent representation of the local decision-making in a regression tree as a global OLS optimization which is then replaced with a GLS loss to create a GLS-style regression tree. This also synergistically addresses the resampling issue, as the use of GLS loss amounts to resampling uncorrelated contrasts (pre-whitened data) instead of the correlated data. For spatial settings, RF-GLS can be used in conjunction with Gaussian Process correlated errors to generate kriging predictions at new locations. RF becomes a special case of RF-GLS with an identity working covariance matrix. We establish consistency of RF-GLS under beta- (absolutely regular) mixing error processes and show that this general result subsumes important cases like autoregressive time series and spatial Matern Gaussian Processes. As a byproduct, we also establish consistency of RF for beta-mixing processes, which to our knowledge, is the first such result for RF under dependence. We empirically demonstrate the improvement achieved by RF-GLS over RF for both estimation and prediction under dependence.

stat.ML↗