arXiv subjects

Arman Cohan

Publications and source records attributed to Arman Cohan.

At least 181 records · Page 10Linked to original sources

arXiv2019

Structural Scaffolds for Citation Intent Classification in Scientific Publications

Identifying the intent of a citation in scientific papers (e.g., background information, use of methods, comparing results) is critical for machine reading of individual publications and automated analysis of the scientific literature. We propose structural scaffolds, a multitask model to incorporate structural information of scientific papers into citations for effective classification of citation intents. Our model achieves a new state-of-the-art on an existing ACL anthology dataset (ACL-ARC) with a 13.3% absolute increase in F1 score, without relying on external linguistic resources or hand-engineered features as done in existing methods. In addition, we introduce a new dataset of citation intents (SciCite) which is more than five times larger and covers multiple scientific domains compared with existing datasets. Our code and data are available at: https://github.com/allenai/scicite.

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arXiv2019

Pretrained Language Models for Sequential Sentence Classification

As a step toward better document-level understanding, we explore classification of a sequence of sentences into their corresponding categories, a task that requires understanding sentences in context of the document. Recent successful models for this task have used hierarchical models to contextualize sentence representations, and Conditional Random Fields (CRFs) to incorporate dependencies between subsequent labels. In this work, we show that pretrained language models, BERT (Devlin et al., 2018) in particular, can be used for this task to capture contextual dependencies without the need for hierarchical encoding nor a CRF. Specifically, we construct a joint sentence representation that allows BERT Transformer layers to directly utilize contextual information from all words in all sentences. Our approach achieves state-of-the-art results on four datasets, including a new dataset of structured scientific abstracts.

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arXiv2019

SciBERT: A Pretrained Language Model for Scientific Text

Obtaining large-scale annotated data for NLP tasks in the scientific domain is challenging and expensive. We release SciBERT, a pretrained language model based on BERT (Devlin et al., 2018) to address the lack of high-quality, large-scale labeled scientific data. SciBERT leverages unsupervised pretraining on a large multi-domain corpus of scientific publications to improve performance on downstream scientific NLP tasks. We evaluate on a suite of tasks including sequence tagging, sentence classification and dependency parsing, with datasets from a variety of scientific domains. We demonstrate statistically significant improvements over BERT and achieve new state-of-the-art results on several of these tasks. The code and pretrained models are available at https://github.com/allenai/scibert/.

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arXiv2019

CEDR: Contextualized Embeddings for Document Ranking

Although considerable attention has been given to neural ranking architectures recently, far less attention has been paid to the term representations that are used as input to these models. In this work, we investigate how two pretrained contextualized language models (ELMo and BERT) can be utilized for ad-hoc document ranking. Through experiments on TREC benchmarks, we find that several existing neural ranking architectures can benefit from the additional context provided by contextualized language models. Furthermore, we propose a joint approach that incorporates BERT's classification vector into existing neural models and show that it outperforms state-of-the-art ad-hoc ranking baselines. We call this joint approach CEDR (Contextualized Embeddings for Document Ranking). We also address practical challenges in using these models for ranking, including the maximum input length imposed by BERT and runtime performance impacts of contextualized language models.

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arXiv2019

Ontology-Aware Clinical Abstractive Summarization

Automatically generating accurate summaries from clinical reports could save a clinician's time, improve summary coverage, and reduce errors. We propose a sequence-to-sequence abstractive summarization model augmented with domain-specific ontological information to enhance content selection and summary generation. We apply our method to a dataset of radiology reports and show that it significantly outperforms the current state-of-the-art on this task in terms of rouge scores. Extensive human evaluation conducted by a radiologist further indicates that this approach yields summaries that are less likely to omit important details, without sacrificing readability or accuracy.

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arXiv2018

Overcoming low-utility facets for complex answer retrieval

Many questions cannot be answered simply; their answers must include numerous nuanced details and additional context. Complex Answer Retrieval (CAR) is the retrieval of answers to such questions. In their simplest form, these questions are constructed from a topic entity (e.g., `cheese') and a facet (e.g., `health effects'). While topic matching has been thoroughly explored, we observe that some facets use general language that is unlikely to appear verbatim in answers. We call these low-utility facets. In this work, we present an approach to CAR that identifies and addresses low-utility facets. We propose two estimators of facet utility. These include exploiting the hierarchical structure of CAR queries and using facet frequency information from training data. To improve the retrieval performance on low-utility headings, we also include entity similarity scores using knowledge graph embeddings. We apply our approaches to a leading neural ranking technique, and evaluate using the TREC CAR dataset. We find that our approach perform significantly better than the unmodified neural ranker and other leading CAR techniques. We also provide a detailed analysis of our results, and verify that low-utility facets are indeed more difficult to match, and that our approach improves the performance for these difficult queries.

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arXiv2018

SMHD: A Large-Scale Resource for Exploring Online Language Usage for Multiple Mental Health Conditions

Mental health is a significant and growing public health concern. As language usage can be leveraged to obtain crucial insights into mental health conditions, there is a need for large-scale, labeled, mental health-related datasets of users who have been diagnosed with one or more of such conditions. In this paper, we investigate the creation of high-precision patterns to identify self-reported diagnoses of nine different mental health conditions, and obtain high-quality labeled data without the need for manual labelling. We introduce the SMHD (Self-reported Mental Health Diagnoses) dataset and make it available. SMHD is a novel large dataset of social media posts from users with one or multiple mental health conditions along with matched control users. We examine distinctions in users' language, as measured by linguistic and psychological variables. We further explore text classification methods to identify individuals with mental conditions through their language.

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arXiv2018

RSDD-Time: Temporal Annotation of Self-Reported Mental Health Diagnoses

Self-reported diagnosis statements have been widely employed in studying language related to mental health in social media. However, existing research has largely ignored the temporality of mental health diagnoses. In this work, we introduce RSDD-Time: a new dataset of 598 manually annotated self-reported depression diagnosis posts from Reddit that include temporal information about the diagnosis. Annotations include whether a mental health condition is present and how recently the diagnosis happened. Furthermore, we include exact temporal spans that relate to the date of diagnosis. This information is valuable for various computational methods to examine mental health through social media because one's mental health state is not static. We also test several baseline classification and extraction approaches, which suggest that extracting temporal information from self-reported diagnosis statements is challenging.

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arXiv2018

A Discourse-Aware Attention Model for Abstractive Summarization of Long Documents

Neural abstractive summarization models have led to promising results in summarizing relatively short documents. We propose the first model for abstractive summarization of single, longer-form documents (e.g., research papers). Our approach consists of a new hierarchical encoder that models the discourse structure of a document, and an attentive discourse-aware decoder to generate the summary. Empirical results on two large-scale datasets of scientific papers show that our model significantly outperforms state-of-the-art models.

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arXiv2018

Characterizing Question Facets for Complex Answer Retrieval

Complex answer retrieval (CAR) is the process of retrieving answers to questions that have multifaceted or nuanced answers. In this work, we present two novel approaches for CAR based on the observation that question facets can vary in utility: from structural (facets that can apply to many similar topics, such as 'History') to topical (facets that are specific to the question's topic, such as the 'Westward expansion' of the United States). We first explore a way to incorporate facet utility into ranking models during query term score combination. We then explore a general approach to reform the structure of ranking models to aid in learning of facet utility in the query-document term matching phase. When we use our techniques with a leading neural ranker on the TREC CAR dataset, our methods rank first in the 2017 TREC CAR benchmark, and yield up to 26% higher performance than the next best method.

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arXiv2018

Helping or Hurting? Predicting Changes in Users' Risk of Self-Harm Through Online Community Interactions

In recent years, online communities have formed around suicide and self-harm prevention. While these communities offer support in moment of crisis, they can also normalize harmful behavior, discourage professional treatment, and instigate suicidal ideation. In this work, we focus on how interaction with others in such a community affects the mental state of users who are seeking support. We first build a dataset of conversation threads between users in a distressed state and community members offering support. We then show how to construct a classifier to predict whether distressed users are helped or harmed by the interactions in the thread, and we achieve a macro-F1 score of up to 0.69.

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arXiv2018

GU IRLAB at SemEval-2018 Task 7: Tree-LSTMs for Scientific Relation Classification

SemEval 2018 Task 7 focuses on relation ex- traction and classification in scientific literature. In this work, we present our tree-based LSTM network for this shared task. Our approach placed 9th (of 28) for subtask 1.1 (relation classification), and 5th (of 20) for subtask 1.2 (relation classification with noisy entities). We also provide an ablation study of features included as input to the network.

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arXiv2017

Depression and Self-Harm Risk Assessment in Online Forums

Users suffering from mental health conditions often turn to online resources for support, including specialized online support communities or general communities such as Twitter and Reddit. In this work, we present a neural framework for supporting and studying users in both types of communities. We propose methods for identifying posts in support communities that may indicate a risk of self-harm, and demonstrate that our approach outperforms strong previously proposed methods for identifying such posts. Self-harm is closely related to depression, which makes identifying depressed users on general forums a crucial related task. We introduce a large-scale general forum dataset ("RSDD") consisting of users with self-reported depression diagnoses matched with control users. We show how our method can be applied to effectively identify depressed users from their use of language alone. We demonstrate that our method outperforms strong baselines on this general forum dataset.

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arXiv2017

Identifying Harm Events in Clinical Care through Medical Narratives

Preventable medical errors are estimated to be among the leading causes of injury and death in the United States. To prevent such errors, healthcare systems have implemented patient safety and incident reporting systems. These systems enable clinicians to report unsafe conditions and cases where patients have been harmed due to errors in medical care. These reports are narratives in natural language and while they provide detailed information about the situation, it is non-trivial to perform large scale analysis for identifying common causes of errors and harm to the patients. In this work, we present a method based on attentive convolutional and recurrent networks for identifying harm events in patient care and categorize the harm based on its severity level. We demonstrate that our methods can significantly improve the performance over existing methods in identifying harm in clinical care.

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arXiv2017

Scientific document summarization via citation contextualization and scientific discourse

The rapid growth of scientific literature has made it difficult for the researchers to quickly learn about the developments in their respective fields. Scientific document summarization addresses this challenge by providing summaries of the important contributions of scientific papers. We present a framework for scientific summarization which takes advantage of the citations and the scientific discourse structure. Citation texts often lack the evidence and context to support the content of the cited paper and are even sometimes inaccurate. We first address the problem of inaccuracy of the citation texts by finding the relevant context from the cited paper. We propose three approaches for contextualizing citations which are based on query reformulation, word embeddings, and supervised learning. We then train a model to identify the discourse facets for each citation. We finally propose a method for summarizing scientific papers by leveraging the faceted citations and their corresponding contexts. We evaluate our proposed method on two scientific summarization datasets in the biomedical and computational linguistics domains. Extensive evaluation results show that our methods can improve over the state of the art by large margins.

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arXiv2017

Contextualizing Citations for Scientific Summarization using Word Embeddings and Domain Knowledge

Citation texts are sometimes not very informative or in some cases inaccurate by themselves; they need the appropriate context from the referenced paper to reflect its exact contributions. To address this problem, we propose an unsupervised model that uses distributed representation of words as well as domain knowledge to extract the appropriate context from the reference paper. Evaluation results show the effectiveness of our model by significantly outperforming the state-of-the-art. We furthermore demonstrate how an effective contextualization method results in improving citation-based summarization of the scientific articles.

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arXiv2017

Scientific Article Summarization Using Citation-Context and Article's Discourse Structure

We propose a summarization approach for scientific articles which takes advantage of citation-context and the document discourse model. While citations have been previously used in generating scientific summaries, they lack the related context from the referenced article and therefore do not accurately reflect the article's content. Our method overcomes the problem of inconsistency between the citation summary and the article's content by providing context for each citation. We also leverage the inherent scientific article's discourse for producing better summaries. We show that our proposed method effectively improves over existing summarization approaches (greater than 30% improvement over the best performing baseline) in terms of \textsc{Rouge} scores on TAC2014 scientific summarization dataset. While the dataset we use for evaluation is in the biomedical domain, most of our approaches are general and therefore adaptable to other domains.

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arXiv2017

A Neural Attention Model for Categorizing Patient Safety Events

Medical errors are leading causes of death in the US and as such, prevention of these errors is paramount to promoting health care. Patient Safety Event reports are narratives describing potential adverse events to the patients and are important in identifying and preventing medical errors. We present a neural network architecture for identifying the type of safety events which is the first step in understanding these narratives. Our proposed model is based on a soft neural attention model to improve the effectiveness of encoding long sequences. Empirical results on two large-scale real-world datasets of patient safety reports demonstrate the effectiveness of our method with significant improvements over existing methods.

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