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Arpita Joshi

Publications and source records attributed to Arpita Joshi.

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GeoSPRINT: Geometric Redundancy-Aware Step Pruning for Inference in Diffusion Trajectories

Diffusion models achieve high sample quality but remain expensive at inference time because sampling requires many sequential neural function evaluations (NFEs). Existing acceleration methods either use fixed step-skipping schedules, adapt step sizes based on local numerical error, or require additional training. We introduce GeoSPRINT (Geometric Step Pruning for Inference in Trajectories), a training-free framework for constructing non-uniform sampling schedules from the geometry of denoising trajectories. GeoSPRINT detects geometrically redundant steps using a hyperplanarity test in latent space, implemented efficiently via QR factorization, and converts the resulting redundancy profile into a sampling schedule that allocates more steps to high-curvature regions of the trajectory. In addition, we introduce the trajectory projection score $α_{\mathrm{traj}}$, a residual-variance metric that quantifies trajectory straightness and serves as a model-free diagnostic for rectified flow quality. Across CIFAR-10 ($32{\times}32$), LSUN Church ($256{\times}256$), and Stable Diffusion v1.5 ($512{\times}512$ latent), GeoSPRINT consistently improves over uniform DDIM (Denoising Diffusion Implicit Models) schedules at matched NFE budgets. On CIFAR-10, GeoSPRINT improves FID (Fréchet Inception Distance) by 0.7-1.1 over DDIM across 49-89 NFEs and surpasses DPM-Solver++ at NFE${\geq}30$ despite using a first-order DDIM solver. On LSUN Church, it reduces FID from 1.48 to 1.26 at 52 steps, and on Stable Diffusion v1.5 it achieves up to 1.93 FID improvement over DDIM. These results show that trajectory geometry provides a useful global signal for allocating inference steps and that schedule quality can substantially improve diffusion sampling efficiency without retraining.

cs.LG

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science

Within clinical, biomedical, and translational science, an increasing number of projects are adopting graphs for knowledge representation. Graph-based data models elucidate the interconnectedness between core biomedical concepts, enable data structures to be easily updated, and support intuitive queries, visualizations, and inference algorithms. However, knowledge discovery across these "knowledge graphs" (KGs) has remained difficult. Data set heterogeneity and complexity; the proliferation of ad hoc data formats; poor compliance with guidelines on findability, accessibility, interoperability, and reusability; and, in particular, the lack of a universally-accepted, open-access model for standardization across biomedical KGs has left the task of reconciling data sources to downstream consumers. Biolink Model is an open source data model that can be used to formalize the relationships between data structures in translational science. It incorporates object-oriented classification and graph-oriented features. The core of the model is a set of hierarchical, interconnected classes (or categories) and relationships between them (or predicates), representing biomedical entities such as gene, disease, chemical, anatomical structure, and phenotype. The model provides class and edge attributes and associations that guide how entities should relate to one another. Here, we highlight the need for a standardized data model for KGs, describe Biolink Model, and compare it with other models. We demonstrate the utility of Biolink Model in various initiatives, including the Biomedical Data Translator Consortium and the Monarch Initiative, and show how it has supported easier integration and interoperability of biomedical KGs, bringing together knowledge from multiple sources and helping to realize the goals of translational science.

cs.DB