arXiv subjects

Arthur Hernandez

Publications and source records attributed to Arthur Hernandez.

6 recordsLinked to original sources

arXiv2026

Mechanics of axis formation in $\textit{Hydra}$

The emergence of a body axis is a fundamental step in the development of multicellular organisms. In simple systems such as $\textit{Hydra}$, growing evidence suggests that mechanical forces generated by collective cellular activity play a central role in this process. Here, we explore a physical mechanism for axis formation based on the coupling between active stresses and tissue elasticity. We analyse the elastic deformation induced by activity-generated stresses and show that, owing to the spherical topology of the tissue, forces globally condense toward configurations in which both elastic strain and nematic defect localise at opposite poles. These mechanically selected states define either a polar or apolar head-food axis. To characterize the condensed regime, we introduce a compact parametrization of of the active force and flux distributions, enabling analytical predictions and direct comparison with experiments. Using this framework, we calculate experimentally relevant observables, including areal strain, lateral pressure, and normal displacements during muscular contraction, as well as the detailed structure of topological defect complexes in head and foot regions. Together, our results identify a mechanical route by which active tissues can spontaneously break symmetry at the organismal scale, suggesting a general physical principle underlying body-axis specification during morphogenesis.

cond-mat.soft↗

arXiv2025

Active Solids: Topological Defect Self-Propulsion Without Flow

The self-propulsion of +1/2 topological defects is a hallmark of active nematic fluids, where the defects are advected by the flow field they themselves generate. In this paper we propose a minimal model for defect self-propulsion in a nematic active solid: a linear elastic medium with an embedded nematic texture that generates active stress and associated elastic strains. We show that such coupling gives rise to self-propelled +1/2 defects that move relative to the elastic medium by local remodeling of the nematic texture without advection. This mechanism is fundamentally different from the fluid case and can lead to unbinding of defect pairs and stabilization of +1 defects. Our findings might help explain how orientational order, of, for example, muscle fibers, is reconfigured during morphogenesis in solid-like tissues. The proposed mechanism may, for instance, control motility and merging of +1/2 defects, which play a crucial role in setting up the body axis during Hydra regeneration.

cond-mat.soft↗

arXiv2023

Finite Elasticity of the Vertex Model and its Role in Rigidity of Curved Cellular Tissues

Using a mean field approach and simulation, we study the non-linear mechanical response of the vertex model (VM) of biological tissue under compression and dilation. The VM is known to exhibit a transition between rigid and fluid-like, or floppy, states driven by geometric incompatibility. Target perimeter and area set a target shape which may not be geometrically achievable, thereby engendering frustration. Previously, an asymmetry in the linear elastic response was identified at the rigidity transition between compression and dilation. Here we show and characterize how the asymmetry extends away from the transition point for finite strains. Under finite compression, an initially solid VM can totally relax perimeter tension, and thereby have reduced bulk and shear modulus. Conversely, an initially floppy VM under dilation can rigidify and have a higher bulk and shear modulus. These observations imply that re-scaling of cell area shifts the transition between rigid and floppy states. Based on this insight, we calculate the re-scaling of cell area engendered by intrinsic curvature and write a prediction for the rigidity transition in the presence of curvature. The shift of the rigidity transition in the presence of curvature for the VM provides a new metric for predicting tissue rigidity from image data for curved tissues in a manner analogous to the flat case.

cond-mat.soft↗

arXiv2022

The role of non-affine deformations in the elastic behavior of the cellular vertex model

The vertex model of epithelia describes the apical surface of a tissue as a tiling of polygonal cells, with a mechanical energy governed by deviations in cell shape from preferred, or target, area, $A_0$, and perimeter, $P_0$. The model exhibits a rigidity transition driven by geometric incompatibility as tuned by the target shape index, $p_0 = P_0 / \sqrt{A_0}$. For $p_0 > p_*(6) = \sqrt{8 \sqrt{3}} \approx 3.72$, with $p_*(6)$ the perimeter of a regular hexagon of unit area, a cell can simultaneously attain both the preferred area and preferred perimeter. As a result, the tissue is in a mechanically soft compatible state, with zero shear and Young's moduli. For $p_0 < p_*(6)$, it is geometrically impossible for any cell to realize the preferred area and perimeter simultaneously, and the tissue is in an incompatible rigid solid state. Using a mean-field approach, we present a complete analytical calculation of the linear elastic moduli of an ordered vertex model. We analyze a relaxation step that includes non-affine deformations, leading to a softer response than previously reported. The origin of the vanishing shear and Young's moduli in the compatible state is the presence of zero-energy deformations of cell shape. The bulk modulus exhibits a jump discontinuity at the transition and can be lower in the rigid state than in the fluid-like state. The Poisson's ratio can become negative which lowers the bulk and Young's moduli. Our work provides a unified treatment of linear elasticity for the vertex model and demonstrates that this linear response is protocol-dependent.

cond-mat.soft↗

arXiv2022

Anomalous elasticity of cellular tissue vertex model

Vertex Models, as used to describe cellular tissue, have an energy controlled by deviations of each cell area and perimeter from target values. The constrained nonlinear relation between area and perimeter leads to new mechanical response. Here we provide a mean-field treatment of a highly simplified model: a uniform network of regular polygons with no topological rearrangements. Since all polygons deform in the same way, we only need to analyze the ground states and the response to deformations of a single polygon (cell). The model exhibits the known transition between a fluid/compatible state, where the cell can accommodate both target area and perimeter, and a rigid/incompatible state. %The rigid solid-like state has a single gapped ground state. We calculate and measure the mechanical resistance to various deformation protocols and discover that at the onset of rigidity, where a single zero-energy ground-state exists, %We show that in the incompatible state, where a single frustrated ground-state exists, linear elasticity fails to describe the mechanical response to even infinitesimal deformations. In particular we identify a breakdown of reciprocity expressed via different moduli for compressive and tensile loads, implying non-analyticity of the energy functional. We give a pictorial representation in configuration space that reveals that the complex elastic response of the Vertex Model arises from the presence of two distinct sets of reference states (associated with target area and target perimeter).

cond-mat.soft↗

arXiv2020

Poisson-bracket formulation of the dynamics of fluids of deformable particles

Using the Poisson bracket method, we derive continuum equations for a fluid of deformable particles in two dimensions. Particle shape is quantified in terms of two continuum fields: an anisotropy density field that captures the deformations of individual particles from regular shapes and a shape tensor density field that quantifies both particle elongation and nematic alignment of elongated shapes. We explicitly consider the example of a dense biological tissue as described by the Vertex model energy, where cell shape has been proposed as a structural order parameter for a liquid-solid transition. The hydrodynamic model of biological tissue proposed here captures the coupling of cell shape to flow, and provides a starting point for modeling the rheology of dense tissue.

cond-mat.soft↗