Searcharxiv⌕ Search

arXiv subjects

Astrid van den Brandt

Publications and source records attributed to Astrid van den Brandt.

5 recordsLinked to original sources

Sycamore: Characterizing Synthetic Personas for Evaluating Genomics Visualization Retrieval

Evaluating visualization systems in niche domains such as genomics is challenging due to scarcity of domain experts and difficulty recruiting a representative user base. While LLM-based synthetic personas are increasingly used to ease evaluation bottlenecks, they face well-founded skepticism. Rather than weighing synthetic personas as substitutes for real users, we ask a fundamental open question: when synthetic personas evaluate a real visualization system, what do they actually produce, and how does that output change when grounded in documented human contexts? We present Sycamore, an exploratory three-condition probe design using Geranium, a search engine for multimodal genomics visualization, as a case study. Sycamore evaluates Geranium using: (1) ungrounded synthetic personas from generic LLM priors; (2) grounded synthetic personas constrained by voice-of-customer artifacts from a prior interview study; and (3) a published baseline study of real domain experts. We observe that grounding shifts synthetic feedback toward the language and concerns of documented users, while ungrounded evaluators drift toward operational specifics that real participants did not raise; both synthetic conditions, however, converge on a find-and-adapt frame and miss the image-modality preference observed in the expert study. We discuss what these observations imply for where synthetic personas might fit alongside expert studies in domain-specific visualization evaluation. All supplemental materials are available at https://osf.io/kdfr3/.

cs.HC↗

Agentic Authoring of Interactive Multiview Visualizations in Genomics

Diverse genomics data, scientific questions, and analysis tasks typically demand highly specialized visualizations. Therefore, users often must customize or author new ones tailored to their data. Existing tools are usually either limited in customization or require substantial learning or programming, and even expressive tools assume visualization expertise many users lack. Agentic and large language model (LLM) approaches are increasingly applied to complex scientific tasks, including visualization. Natural-language conversational interfaces offer a promising path to democratizing the authoring of complex visualizations. In the context of genomics, these approaches face additional challenges: genomics visualizations typically integrate heterogeneous data types and are composed of multiple linked interactive views. These challenges motivate more structured LLM-based schemes. We first characterize where vanilla LLM generation succeeds and fails for genomics visualization, identifying eight quality dimensions. We then compare six schemes--direct generation, a fixed pipeline, and four agentic configurations varying in the number of specialist agents and the presence of a reviewer--across 159 cases spanning three levels of query ambiguity and specification complexity. All schemes use the Gosling visualization grammar as structured output. Agentic iteration substantially improves perceived quality over both baselines, while more complex agent architectures yield no additional benefit. We discuss implications for designing agentic systems for domain-specific visualization authoring. All supplemental materials are available at https://osf.io/uqe83.

cs.HC↗

YAC: Bridging Natural Language and Interactive Visual Exploration with Generative AI for Biomedical Data Discovery

Incorporating natural language input has the potential to improve the capabilities of biomedical data discovery interfaces. However, user interface elements and visualizations are still powerful tools for interacting with data. In our prototype system, YAC, Yet Another Chatbot, we integrate natural language and interactive visualizations. YAC uses a tool-calling multi-agent system to generate declarative output, which is interpreted to render linked interactive visualizations and apply data filters. We also include adjustment widgets, which allow users to directly modify the structured output. Structured text is also generated to clarify user intent, notify users of system boundaries, and explain aspects of the data with live data element links. We conducted a user study with domain experts to surface areas where YAC can be improved. Furthermore we reflect on the capabilities and design of this system with an analysis of its technical dimensions.

cs.HC↗

Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools

Analysis of genomics data is central to nearly all areas of modern biology. Despite significant progress in artificial intelligence (AI) and computational methods, these technologies require significant human oversight to generate novel and reliable biological insights. Consequently, the genomics community has developed a substantial number of diverse visualization approaches and a proliferation of tools that biologists rely on in their data analysis workflows. While there are a few commonly used visualization tools for genomics data, many tools target specific use cases for genomics data interpretation and offer only a limited, predefined set of visualization types. Moreover, static visualizations often fail to support exploratory analysis. Developing interactive visualizations and tools typically requires significant time and technical expertise, even when supported by modern LLM-powered coding assistants, and the resulting visualizations can be difficult to share among collaborators. We developed Gosling Designer, an all-in-one platform for editing, exploring, and sharing visualizations of genomics data. Gosling Designer addresses four key challenges observed in existing genomics visualization tools: (1) limited versatility, (2) difficulty of visualization authoring, (3) complexity of data management, and (4) barriers to sharing and collaboration.

q-bio.GN↗

Characterizing Multimodal Interaction in Visualization Authoring Tools

Multimodal interaction has been increasingly considered in designing visualization authoring tools. However, multimodal interaction has a broad meaning in visualization authoring, according to our literature review. Although some previous studies compare different authoring tools, a comprehensive overview of the diverse characteristics of multimodal interaction in visualization authoring tools is still missing. This paper seeks to offer a systematic perspective on how multimodal interaction is integrated within visualization authoring tools. Such an overview can enhance understanding of current practices, highlight distinguishing features among tools, and help identify future research directions, guiding designers in developing more accessible and effective authoring systems. We review 20 visualization authoring tools that incorporate multimodal interaction and characterize how multimodal interaction is applied in these tools. Based on the review results, we discuss design implications and future directions.

cs.HC↗