arXiv subjects

Atena Rezaei

Publications and source records attributed to Atena Rezaei.

4 recordsLinked to original sources

arXiv2022

L1-norm vs. L2-norm fitting in optimizing focal multi-channel tES stimulation: linear and semidefinite programming vs. weighted least squares

This study focuses on Multi-Channel Transcranial Electrical Stimulation, a non-invasive brain method for stimulating neuronal activity under the influence of low-intensity currents. We introduce mathematical formulation for finding a current pattern which optimizes a L1-norm fit between a given focal target distribution and volume current density inside the brain. L1-norm is well-known to favor well-localized or sparse distributions compared to L2-norm (least-squares) fitted estimates. We present a linear programming approach which performs L1-norm fitting and penalization of the current pattern (L1L1) to control the number of non-zero currents. The optimizer filters a large set of candidate solutions using a two-stage metaheuristic search in from a pre-filtered set of candidates. The numerical simulation results, obtained with both a 8- and 20-channel electrode montages, suggest that our hypothesis on the benefits of L1-norm data fitting is valid. As compared to L1-norm regularized L2-norm fitting (L1L2) via semidefinite programming and weighted Tikhonov least-squares method, the L1L1 results were overall preferable with respect to maximizing the focused current density at the target position and the ratio between focused and nuisance current magnitudes. We propose the metaheuristic L1L1 optimization approach as a potential technique to obtain a well-localized stimulus with a controllable magnitude at a given target position. L1L1 finds a current pattern with a steep contrast between the anodal and cathodal electrodes meanwhile suppressing the nuisance currents in the brain, hence, providing a potential alternative to modulate the effects of the stimulation, e.g., the sensation experienced by the subject.

math.OC↗

arXiv2022

Conditionally Exponential Prior in Focal Near- and Far-Field EEG Source Localization via Randomized Multiresolution Scanning (RAMUS)

In this paper, we focus on the inverse problem of reconstructing distributional brain activity with cortical and weakly detectable deep components in non-invasive Electroencephalography. In particular, we aim to generalize the previously extensively used conditionally Gaussian prior (CGP) formalism to achieve distributional reconstructions with higher focality. For this purpose, we introduce as a hierarchical prior, a general exponential distribution, refered to as conditionally exponential prior (CEP). The first-degree CEP corresponds to focality enforcing Laplace prior that suffers from strong depth bias making the deep activity unrecoverable. We sample over multiple resolution levels via RAMUS to reduce this bias as it is known to depend on the resolution of the source space. Moreover, we introduce a procedure based on the physiological a priori knowledge of the brain activity to obtain the shape and scale parameters of the gamma hyperprior that steer the CEP. The posterior estimates are calculated using iterative statistical methods, expectation maximization and iterative alternating sequential algorithm, which we show to be algorithmically similar and to have a close resemblance to the iterative reweighting methods. The performance of CEP is compared with the recent sampling-based dipole localization method Sequential semi-analytic Monte Carlo estimation (SESAME) in numerical experiments of simulated somatosensory evoked potentials related to the human median nerve stimulation. Our results suggest that a hybrid of the first-degree CEP and RAMUS can achieve an accuracy comparable to the second-degree case (CGP) while being more focal. Further, the proposed hybrid is shown to be robust to noise effects and compare well to the dipole reconstructions obtained with SESAME.

math.NA↗

arXiv2020

Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth

We focus on electromagnetoencephalography imaging of the neural activity and, in particular, finding a robust estimate for the primary current distribution via the hierarchical Bayesian model (HBM). Our aim is to develop a reasonably fast maximum a posteriori (MAP) estimation technique which would be applicable for both superficial and deep areas without specific a priori knowledge of the number or location of the activity. To enable source distinguishability for any depth, we introduce a randomized multiresolution scanning (RAMUS) approach in which the MAP estimate of the brain activity is varied during the reconstruction process. RAMUS aims to provide a robust and accurate imaging outcome for the whole brain, while maintaining the computational cost on an appropriate level. The inverse gamma (IG) distribution is applied as the primary hyperprior in order to achieve an optimal performance for the deep part of the brain. In this proof-of-the-concept study, we consider the detection of simultaneous thalamic and somatosensory activity via numerically simulated data modeling the 14-20 ms post-stimulus somatosensory evoked potential and field response to electrical wrist stimulation. Both a spherical and realistic model are utilized to analyze the source reconstruction discrepancies. In the numerically examined case, RAMUS was observed to enhance the visibility of deep components and also marginalizing the random effects of the discretization and optimization without a remarkable computation cost. A robust and accurate MAP estimate for the primary current density was obtained in both superficial and deep parts of the brain.

math.NA↗

arXiv2019

Zeffiro user interface for electromagnetic brain imaging: a GPU accelerated FEM tool for forward and inverse computations in Matlab

This article introduces the Zeffiro interface (ZI) version 2.2 for brain imaging. ZI aims to provide a simple, accessible and multimodal open source platform for finite element method (FEM) based and graphics processing unit (GPU) accelerated forward and inverse computations in the Matlab environment. It allows one to (1) generate a given multi-compartment head model, (2) to evaluate a lead field matrix as well as (3) to invert and analyze a given set of measurements. GPU acceleration is applied in each of the processing stages (1)-(3). In its current configuration, ZI includes forward solvers for electro-/magnetoencephalography (EEG) and linearized electrical impedance tomography (EIT) as well as a set of inverse solvers based on the hierarchical Bayesian model (HBM). We report the results of EEG and EIT inversion tests performed with real and synthetic data, respectively, and demonstrate numerically how the inversion parameters affect the EEG inversion outcome in HBM. The GPU acceleration was found to be essential in the generation of the FE mesh and the LF matrix in order to achieve a reasonable computing time. The code package can be extended in the future based on the directions given in this article.

cs.MS↗