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Atilla Kaan Alkan

Publications and source records attributed to Atilla Kaan Alkan.

6 recordsLinked to original sources

AstroConcepts: A Large-Scale Multi-Label Classification Corpus for Astrophysics

Scientific multi-label text classification suffers from extreme class imbalance, where specialized terminology exhibits severe power-law distributions that challenge standard classification approaches. Existing scientific corpora lack comprehensive controlled vocabularies, focusing instead on broad categories and limiting systematic study of extreme imbalance. We introduce AstroConcepts, a corpus of English abstracts from 21,702 published astrophysics papers, labeled with 2,367 concepts from the Unified Astronomy Thesaurus. The corpus exhibits severe label imbalance, with 76% of concepts having fewer than 50 training examples. By releasing this resource, we enable systematic study of extreme class imbalance in scientific domains and establish strong baselines across traditional, neural, and vocabulary-constrained LLM methods. Our evaluation reveals three key patterns that provide new insights into scientific text classification. First, vocabulary-constrained LLMs achieve competitive performance relative to domain-adapted models in astrophysics classification, suggesting a potential for parameter-efficient approaches. Second, domain adaptation yields relatively larger improvements for rare, specialized terminology, although absolute performance remains limited across all methods. Third, we propose frequency-stratified evaluation to reveal performance patterns that are hidden by aggregate scores, thereby making robustness assessment central to scientific multi-label evaluation. These results offer actionable insights for scientific NLP and establish benchmarks for research on extreme imbalance.

cs.CL↗

Do Lexical and Contextual Coreference Resolution Systems Degrade Differently under Mention Noise? An Empirical Study on Scientific Software Mentions

We present our participation in the SOMD 2026 shared task on cross-document software mention coreference resolution, where our systems ranked second across all three subtasks. We compare two fine-tuning-free approaches: Fuzzy Matching (FM), a lexical string-similarity method, and Context Aware Representations (CAR), which combines mention-level and document-level embeddings. Both achieve competitive performance across all subtasks (CoNLL F1 of 0.94-0.96), with CAR consistently outperforming FM by 1 point on the official test set, consistent with the high surface regularity of software names, which reduces the need for complex semantic reasoning. A controlled noise-injection study reveals complementary failure modes: as boundary noise increases, CAR loses only 0.07 F1 points from clean to fully corrupted input, compared to 0.20 for FM, whereas under mention substitution, FM degrades more gracefully (0.52 vs. 0.63). Our inference-time analysis shows that FM scales superlinearly with corpus size, whereas CAR scales approximately linearly, making CAR the more efficient choice at large scale. These findings suggest that system selection should be informed by both the noise profile of the upstream mention detector and the scale of the target corpus. We release our code to support future work on this underexplored task.

cs.CL↗

A Survey on Hypothesis Generation for Scientific Discovery in the Era of Large Language Models

Hypothesis generation is a fundamental step in scientific discovery, yet it is increasingly challenged by information overload and disciplinary fragmentation. Recent advances in Large Language Models (LLMs) have sparked growing interest in their potential to enhance and automate this process. This paper presents a comprehensive survey of hypothesis generation with LLMs by (i) reviewing existing methods, from simple prompting techniques to more complex frameworks, and proposing a taxonomy that categorizes these approaches; (ii) analyzing techniques for improving hypothesis quality, such as novelty boosting and structured reasoning; (iii) providing an overview of evaluation strategies; and (iv) discussing key challenges and future directions, including multimodal integration and human-AI collaboration. Our survey aims to serve as a reference for researchers exploring LLMs for hypothesis generation.

cs.CL↗

Follow-up of gravitational waves alerts with IACTs using Astro-COLIBRI

Follow-up of gravitational wave alerts has proven to be challenging in the past due to the large uncertainty on the localisation, much larger than the field of view of most instruments. A smart pointing strategy helps to increase the chance of observing the true position of the underlying compact binary merger event and so to detect an electromagnetic counterpart. To tackle this, a software called tilepy has been developed and was successfully used by the H.E.S.S. collaboration to search for very-high energy gamma-ray emission from GWs during the O2 and O3 runs. The optimised tiling strategies implemented in tilepy allowed H.E.S.S. to be the first ground facility to point toward the true position of GW 170817. Here we present the main strategy used by the software to compute an optimal observation schedule. The Astro-COLIBRI platform helps to plan follow-up of a large range of transient phenomena including GW alerts. The integration of tilepy in this tool allow for an easy planning and visualisation of of follow-up of gravitational wave alert helping the astronomer to maximise the chance of detecting a counterpart. The platform also provides an overview of the multi-wavelength context by grouping and visualising information coming from different observatories alongside GW alerts.

astro-ph.IM↗

Astro-COLIBRI: An Advanced Platform for Real-Time Multi-Messenger Astrophysics

Observations of transient phenomena like Gamma-Ray Bursts (GRBs), Fast Radio Bursts (FRBs), stellar flares and explosions (novae and supernovae), combined with the detection of novel cosmic messengers like high-energy neutrinos and gravitational waves has revolutionized astrophysics over the last years. The discovery potential of both ulti-messenger and multi-wavelength follow-up observations as well as serendipitous observations could be maximized with a novel tool which allows for quickly acquiring an overview over relevant information associated with each new detection. Here we present Astro-COLIBRI, a novel and comprehensive platform for this challenge. Astro-COLIBRI's architecture comprises a public RESTful API, real-time databases, a cloud-based alert system and a website as well as apps for iOS and Android as clients for users. Astro-COLIBRI evaluates incoming messages of astronomical observations from all available alert streams in real time, filters them by user specified criteria and puts them into their MWL and MM context. The clients provide a graphical representation with an easy to grasp summary of the relevant data to allow for the fast identification of interesting phenomena, provides an assessment of observing conditions at a large selection of observatories around the world, and much more. Here the key features of Astro-COLIBRI are presented. We outline the architecture, summarize the used data resources, and provide examples for applications and use cases. Focussing on the high-energy domain, we'll discuss the use of the platform in searches for high-energy gamma-ray counterparts to high-energy neutrinos, gamma-ray bursts and gravitational waves.

astro-ph.IM↗

Astro-COLIBRI: a new platform for real-time multi-messenger astrophysics

Flares of known astronomical sources and new transient phenomena occur on different timescales, from sub-seconds to several days or weeks. The discovery potential of both serendipitous observations and multi-messenger and multi-wavelength follow-up observations could be maximized with a tool which allows for quickly acquiring an overview over both persistent sources as well as transient events in the relevant phase space. We here present COincidence LIBrary for Real-time Inquiry (Astro-COLIBRI), a novel and comprehensive tool for this task. Astro-COLIBRI's architecture comprises a RESTful API, a real-time database, a cloud-based alert system and a website (https://astro-colibri.com) as well as apps for iOS and Android as clients for users. The structure of Astro-COLIBRI is optimized for performance and reliability and exploits concepts such as multi-index database queries, a global content delivery network (CDN), and direct data streams from the database to the clients. Astro-COLIBRI evaluates incoming VOEvent messages of astronomical observations in real time, filters them by user-specified criteria and puts them into their MWL and MM context. The clients provide a graphical representation with an easy to grasp summary of the relevant data to allow for the fast identification of interesting phenomena and provides an assessment of observing conditions at a large selection of observatories around the world. We here summarize the key features of Astro-COLIBRI, the architecture and used data resources. We specifically provide examples for applications and use cases. Focussing on the high-energy domain, we showcase how Astro-COLIBRI facilitates the search for high-energy gamma-ray counterparts to high-energy neutrinos and scheduling of follow-up observations of a large variety of transient phenomena like gamma-ray bursts, gravitational waves, TDEs, FRBs, and others.

astro-ph.IM↗