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Avraham Moriel

Publications and source records attributed to Avraham Moriel.

14 recordsLinked to original sources

Nonlinear diffusion and compressive rims in source-driven biopolymer condensates

Many subcellular condensates continuously produce biopolymers. Coupling Flory-Huggins thermodynamics to two-fluid viscoelasticity, we probe the diffusion of such source-driven polymeric droplets, and identify a universal structural compressive rim at their diffusion front. Integrating analytical scaling laws, numerical simulations, and experimental data, we show that this framework captures key structural and dynamic characteristics of the nucleolus, demonstrating the role of polymer diffusion in non-equilibrium biological transport.

cond-mat.soft

Polymer-polymer interdiffusion: effects of entanglements and a polymeric source

Many industrial applications and biological scenarios involve the interdiffusion of two polymeric species. Motivated by biological subcellular source-driven processes, we study polymer-polymer interdiffusion problems in the absence or the presence of a polymeric source, for both unentangled and entangled scenarios. Utilizing a two-fluid formalism, we arrive at scaling relations, self-similar reductions, and analytical solutions, which are confirmed with one- and two-dimensional numerical simulations. The introduction of a source term breaks the self-similar structure, modifying the boundary conditions and the domain of integration. Nevertheless, we show that the front characteristics of the diffusing droplet exhibit similar spatial structures as in the absence of a source. Our results allow deeper understanding of polymer-polymer interdiffusion and nonlinear transport, especially in the presence of a source.

cond-mat.soft

Enucleated incompressible red blood cells in shear flow: theoretical analysis of shape instabilities

Red blood cells (RBCs) are essential for oxygen transport, and their remarkable ability to undergo significant deformations during flow is a crucial feature for their physiological function. At intermediate shear rates typical of the microcirculation, RBCs can adopt complex, multi-lobed shapes, signifying a dynamic instability. Here we adopt a perturbative theoretical framework of a quasi-spherical RBC under external shear flow to study such shape instabilities. To better capture RBC maturation and enucleation, we first extend the framework to explicitly account for different excess areas between the stress-free and current membrane shapes. We revisit the reduced equations of motion obtained for an ellipsoidally-shaped RBC, and demonstrate the effect of different excess areas and initial orientation on the dynamical trajectories. Then, we introduce additional spatial modes and show that an emerging instability critically depends on the RBC's shear and bending moduli, the internal to external viscosity ratio, and the excess area, mainly through the RBC's membrane tension. We also study the instability-induced saturation of the membrane tension, and the resulting excess area redistribution at long times. The theoretical framework and the emerging picture of the different instabilities provide insights into the emergence of stomatocyte and trilobe shapes exhibited by RBCs under external flow.

cond-mat.soft

Experimental evidence for the $\omega^4$ tail of the nonphononic spectra of glasses

It is now established that glasses feature low-frequency, nonphononic excitations, in addition to phonons that follow Debye's vibrational density of state (VDoS). Extensive computer studies demonstrated that these nonphononic, glassy excitations follow a universal non-Debye VDoS ${\cal D}_{\rm G}(\omega)\!\sim\!\omega^4$, at low frequencies $\omega$. Yet, due to intrinsic difficulties in disentangling ${\cal D}_{\rm G}(\omega)$ from the total VDoS ${\cal D}(\omega)$, which is experimentally accessible through various scattering techniques, the $\omega^4$ tail of ${\cal D}_{\rm G}(\omega)$ lacked direct experimental support. We develop a procedure to extract ${\cal D}_{\rm G}(\omega)$ from the measured ${\cal D}(\omega)$, based on recent advances in understanding low-frequency excitations in glasses, and apply it to available datasets for diverse glasses. The resulting analysis shows that the $\omega^4$ tail of the nonphononic vibrational spectra of glasses is nontrivially consistent with a broad range of experimental observations. It also further supports that ${\cal D}_{\rm G}(\omega)$ makes an additive contribution to ${\cal D}(\omega)$.

cond-mat.dis-nn

Enumerating low-frequency nonphononic vibrations in computer glasses

In addition to Goldstone phonons that generically emerge in the low-frequency vibrational spectrum of any solid, crystalline or glassy, structural glasses also feature other low-frequency vibrational modes. The nature and statistical properties of these modes -- often termed `excess modes' -- have been the subject of decades-long investigation. Studying them, even using well-controlled computer glasses, has proven challenging due to strong spatial hybridization effects between phononic and nonphononic excitations, which hinder quantitative analyses of the nonphononic contribution ${\cal D}_{\rm G}(\omega)$ to the total spectrum ${\cal D}(\omega)$, per frequency $\omega$. Here, using recent advances indicating that ${\cal D}_{\rm G}(\omega)\!=\!{\cal D}(\omega)-{\cal D}_{\rm D}(\omega)$, where ${\cal D}_{\rm D}(\omega)$ is Debye's spectrum of phonons, we present a simple and straightforward scheme to enumerate nonphononic modes in computer glasses. Our analysis establishes that nonphononic modes in computer glasses indeed make an additive contribution to the total spectrum, including in the presence of strong hybridizations. Moreover, it cleanly reveals the universal ${\cal D}_{\rm G}(\omega)\!\sim\!\omega^4$ tail of the nonphononic spectrum, and opens the way for related analyses of experimental spectra of glasses.

cond-mat.soft

Elementary processes in dilatational plasticity of glasses

Materials typically fail under complex stress states, essentially involving dilatational (volumetric) components that eventually lead to material decohesion/separation. It is therefore important to understand dilatational irreversible deformation -- i.e., dilatational plasticity -- en route to failure. In the context of glasses, much focus has been given to shear (volume-preserving) plasticity, both in terms of the stress states considered and the corresponding material response. Here, using a recently-developed methodology and extensive computer simulations, we shed basic light on the elementary processes mediating dilatational plasticity in glasses. We show that plastic instabilities, corresponding to singularities of the glass Hessian, generically feature both dilatational and shear irreversible strain components. The relative magnitude and statistics of the strain components depend both on the symmetry of the driving stress (e.g., shear vs.~hydrostatic tension) and on the cohesive (attractive) part of the interatomic interaction. We further show that the tensorial shear component of the plastic strain is generally non-planar and also extract the characteristic volume of plastic instabilities. Elucidating the fundamental properties of the elementary micro-mechanical building blocks of plasticity in glasses sets the stage for addressing larger-scale, collective phenomena in dilatational plasticity such as topological changes in the form of cavitation and ductile-to-brittle transitions. As a first step in this direction, we show that the elastic moduli markedly soften during dilatational plastic deformation approaching cavitation.

cond-mat.soft

Self-Driven Configurational Dynamics in Frustrated Spring-Mass Systems

Various physical systems relax mechanical frustration through configurational rearrangements. We examine such rearrangements via Hamiltonian dynamics of simple internally-stressed harmonic 4-mass systems. We demonstrate theoretically and numerically how mechanical frustration controls the underlying potential energy landscape. Then, we examine the harmonic 4-mass systems' Hamiltonian dynamics and relate the onset of chaotic motion to self-driven rearrangements. We show such configurational dynamics may occur without strong precursors, rendering such dynamics seemingly spontaneous.

cond-mat.soft

The boson peak in the vibrational spectra of glasses

A hallmark of glasses is an excess of low-frequency, nonphononic vibrations, in addition to phonons. It is associated with the intrinsically nonequilibrium and disordered nature of glasses, and is generically manifested as a THz peak -- the boson peak -- in the ratio of the vibrational density of state (VDoS) and Debye's VDoS of phonons. Yet, the excess vibrations and the boson peak are not fully understood. Here, using reanalysis of experimental data, extensive computer simulations and a mean-field model, we show that the nonphononic part of the VDoS itself features both a universal power-law tail and a peak, entirely accounted for by quasi-localized nonphononic vibrations, whose existence was recently established. We explain the mild variation of the peak's frequency and magnitude with glasses' thermal history, along with the strong variation of the power-law tail. We also show that modes that populate the peak's region feature many coupled quasi-localized nonphononic vibrations, when their spatial structure is considered. Our results provide a unified physical picture of the low-frequency vibrational spectra of glasses, and in particular elucidate the origin, nature and properties of the boson peak.

cond-mat.dis-nn

Internally-stressed and positionally-disordered minimal complexes yield glasslike nonphononic excitations

Glasses, unlike their crystalline counterparts, exhibit low-frequency nonphononic excitations whose frequencies $ω$ follow a universal $\mathcal{D}\!\left(ω\right)\!\sim\!ω^4$ density of states. The process of glass formation generates positional disorder intertwined with mechanical frustration, posing fundamental challenges in understanding the origins of glassy nonphononic excitations. Here we suggest that \emph{minimal complexes} -- mechanically-frustrated and positionally-disordered local structures -- embody the minimal physical ingredients needed to generate glasslike excitations. We investigate the individual effects of mechanical frustration and positional disorder on the vibrational spectrum of isolated minimal complexes, and demonstrate that ensembles of marginally stable minimal complexes yield $\mathcal{D}\!\left(ω\right)\!\sim\!ω^4$. Furthermore, glasslike excitation emerge by embedding a single minimal complex within a perfect lattice. Consequently, minimal complexes offer a conceptual framework to understand glasslike excitations from first principles, as well as a practical computational method for introducing them into solids.

cond-mat.soft

Extracting the properties of quasilocalized modes in computer glasses: Long-range continuum fields, contour integrals and boundary effects

Low-frequency nonphononic modes and plastic rearrangements in glasses are spatially quasilocalized, i.e. feature a disorder-induced short-range core and known long-range decaying elastic fields. Extracting the unknown short-range core properties, potentially accessible in computer glasses, is of prime importance. Here we consider a class of contour integrals, performed over the known long-range fields, which are especially designed for extracting the core properties. We first show that in computer glasses of typical sizes used in current studies, the long-range fields of quasilocalized modes experience boundary effects related to the simulation box shape and the widely employed periodic boundary conditions. In particular, image interactions mediated by the box shape and the periodic boundary conditions induce fields' rotation and orientation-dependent suppression of their long-range decay. We then develop a continuum theory that quantitatively predicts these finite-size boundary effects and support it by extensive computer simulations. The theory accounts for the finite-size boundary effects and at the same time allows the extraction of the short-range core properties, such as their typical strain ratios and orientation. The theory is extensively validated in both 2D and 3D. Overall, our results offer a useful tool for extracting the intrinsic core properties of nonphononic modes and plastic rearrangements in computer glasses.

cond-mat.soft

Wave attenuation in glasses: Rayleigh and generalized-Rayleigh scattering scaling

The attenuation of long-wavelength phonons (waves) by glassy disorder plays a central role in various glass anomalies, yet it is neither fully characterized, nor fully understood. Of particular importance is the scaling of the attenuation rate $Γ(k)$ with small wavenumbers $k\!\to\!0$ in the thermodynamic limit of macroscopic glasses. Here we use a combination of theory and extensive computer simulations to show that the macroscopic low-frequency behavior emerges at intermediate frequencies in finite-size glasses, above a recently identified crossover wavenumber $k_\dagger$, where phonons are no longer quantized into bands. For $k\!<\!k_\dagger$, finite-size effects dominate $Γ(k)$, which is quantitatively described by a theory of disordered phonon bands. For $k\!>\!k_\dagger$, we find that $Γ(k)$ is affected by the number of quasilocalized nonphononic excitations, a generic signature of glasses that feature a universal density of states. In particular, we show that in a frequency range in which this number is small, $Γ(k)$ follows a Rayleigh scattering scaling $\sim\!k^{d+1}$ ($d$ is the spatial dimension), and that in a frequency range in which this number is sufficiently large, the recently observed generalized-Rayleigh scaling of the form $\sim\!k^{d+1}\log\!{(k_0/k)}$ emerges ($k_0\!>k_\dagger$ is a characteristic wavenumber). Our results suggest that macroscopic glasses --- and, in particular, glasses generated by conventional laboratory quenches that are known to strongly suppress quasilocalized nonphononic excitations --- exhibit Rayleigh scaling at the lowest wavenumbers $k$ and a crossover to generalized-Rayleigh scaling at higher $k$. Some supporting experimental evidence from recent literature is presented.

cond-mat.soft

Necking instabilities in elasto-viscoplastic materials

Necking instabilities, in which tensile (extensional) deformation localizes into a small spatial region, are generic failure modes in elasto-viscoplastic materials. Materials in this very broad class --- including amorphous, crystalline, polycrystalline and other materials --- feature a predominantly elastic response at small stresses, plasticity onset at a rather well-defined yield stress and rate-dependence. Necking instabilities involve a unique coupling between the system's geometry and its constitutive behavior. We consider generic elasto-viscoplastic constitutive relations involving an internal-state field, which represents the structural evolution of the material during plastic deformation, and study necking in the long-wavelength approximation (sometimes termed the lubrication or slender-bar approximation). We derive a general expression for the largest time-dependent eigenvalue in an approximate WKB-like linear stability analysis, highlighting various basic physical effects involved in necking. This expression is then used to propose criteria for the onset of necking and more importantly for the emergence of strong localization. Applications to strain-softening amorphous plasticity, in the framework of the Shear-Transformation-Zone model, and to strain-hardening crystalline/polycrystalline plasticity, in the framework of the Kocks-Mecking model, are presented. These quantitative analyses of widely different material models support the theoretical predictions, most notably for the strong localization during necking.

cond-mat.mtrl-sci

An Efficient Coding Theory for a Dynamic Trajectory Predicts non-Uniform Allocation of Grid Cells to Modules in the Entorhinal Cortex

Grid cells in the entorhinal cortex encode the position of an animal in its environment using spatially periodic tuning curves of varying periodicity. Recent experiments established that these cells are functionally organized in discrete modules with uniform grid spacing. Here we develop a theory for efficient coding of position, which takes into account the temporal statistics of the animal's motion. The theory predicts a sharp decrease of module population sizes with grid spacing, in agreement with the trends seen in the experimental data. We identify a simple scheme for readout of the grid cell code by neural circuitry, that can match in accuracy the optimal Bayesian decoder of the spikes. This readout scheme requires persistence over varying timescales, ranging from ~1ms to ~1s, depending on the grid cell module. Our results suggest that the brain employs an efficient representation of position which takes advantage of the spatiotemporal statistics of the encoded variable, in similarity to the principles that govern early sensory coding.

q-bio.NC