Azeez Idris | Searcharxiv

arXiv2025

Stronger is not better: Better Augmentations in Contrastive Learning for Medical Image Segmentation

Self-supervised contrastive learning is among the recent representation learning methods that have shown performance gains in several downstream tasks including semantic segmentation. This paper evaluates strong data augmentation, one of the most important components for self-supervised contrastive learning's improved performance. Strong data augmentation involves applying the composition of multiple augmentation techniques on images. Surprisingly, we find that the existing data augmentations do not always improve performance for semantic segmentation for medical images. We experiment with other augmentations that provide improved performance.

eess.IV↗

arXiv2024

IDCIA: Immunocytochemistry Dataset for Cellular Image Analysis

We present a new annotated microscopic cellular image dataset to improve the effectiveness of machine learning methods for cellular image analysis. Cell counting is an important step in cell analysis. Typically, domain experts manually count cells in a microscopic image. Automated cell counting can potentially eliminate this tedious, time-consuming process. However, a good, labeled dataset is required for training an accurate machine learning model. Our dataset includes microscopic images of cells, and for each image, the cell count and the location of individual cells. The data were collected as part of an ongoing study investigating the potential of electrical stimulation to modulate stem cell differentiation and possible applications for neural repair. Compared to existing publicly available datasets, our dataset has more images of cells stained with more variety of antibodies (protein components of immune responses against invaders) typically used for cell analysis. The experimental results on this dataset indicate that none of the five existing models under this study are able to achieve sufficiently accurate count to replace the manual methods. The dataset is available at https://figshare.com/articles/dataset/Dataset/21970604.

eess.IV↗