arXiv subjects

B. Kahng

Publications and source records attributed to B. Kahng.

At least 109 records · Page 6Linked to original sources

arXiv2006

Fractality in complex networks: critical and supercritical skeletons

Fractal scaling--a power-law behavior of the number of boxes needed to tile a given network with respect to the lateral size of the box--is studied. We introduce a new box-covering algorithm that is a modified version of the original algorithm introduced by Song et al. [Nature (London) 433, 392 (2005)]; this algorithm enables effective computation and easy implementation. Fractal networks are viewed as comprising a skeleton and shortcuts. The skeleton, embedded underneath the original network, is a special type of spanning tree based on the edge betweenness centrality; it provides a scaffold for the fractality of the network. When the skeleton is regarded as a branching tree, it exhibits a plateau in the mean branching number as a function of the distance from a root. Based on these observations, we construct a fractal network model by combining a random branching tree and local shortcuts. The scaffold branching tree can be either critical or supercritical, depending on the small-worldness of a given network. For the network constructed from the critical (supercritical) branching tree, the average number of vertices within a given box grows with the lateral size of the box according to a power-law (an exponential) form in the cluster-growing method. The distribution of box masses, i.e., the number of vertices within each box, follows a power law P_m(M) sim M^{-eta}. The exponent eta depends on the box lateral size ell_B. For small values of ell_B, eta is equal to the degree exponent gamma of a given scale-free network, whereas eta approaches the exponent tau=gamma/(gamma-1) as ell_B increases, which is the exponent of the cluster-size distribution of the random branching tree. We also study the perimeter of a given box as a function of the box mass.

cond-mat.stat-mech↗

arXiv2006

Dynamics of Multi-Player Games

We analyze the dynamics of competitions with a large number of players. In our model, n players compete against each other and the winner is decided based on the standings: in each competition, the mth ranked player wins. We solve for the long time limit of the distribution of the number of wins for all n and m and find three different scenarios. When the best player wins, the standings are most competitive as there is one-tier with a clear differentiation between strong and weak players. When an intermediate player wins, the standings are two-tier with equally-strong players in the top tier and clearly-separated players in the lower tier. When the worst player wins, the standings are least competitive as there is one tier in which all of the players are equal. This behavior is understood via scaling analysis of the nonlinear evolution equations.

physics.soc-ph↗

arXiv2006

Network analysis of online bidding activity

With the advent of digital media, people are increasingly resorting to online channels for commercial transactions. Online auction is a prototypical example. In such online transactions, the pattern of bidding activity is more complex than traditional online transactions; this is because the number of bidders participating in a given transaction is not bounded and the bidders can also easily respond to the bidding instantaneously. By using the recently developed network theory, we study the interaction patterns between bidders (items) who (that) are connected when they bid for the same item (if the item is bid by the same bidder). The resulting network is analyzed by using the hierarchical clustering algorithm, which is used for clustering analysis for expression data from DNA microarrays. A dendrogram is constructed for the item subcategories; this dendrogram is compared with a traditional classification scheme. The implication of the difference between the two is discussed.

physics.soc-ph↗

arXiv2006

Structure and evolution of online social relationships: Heterogeneity in warm discussions

With the advancement in the information age, people are using electronic media more frequently for communications, and social relationships are also increasingly resorting to online channels. While extensive studies on traditional social networks have been carried out, little has been done on online social network. Here we analyze the structure and evolution of online social relationships by examining the temporal records of a bulletin board system (BBS) in a university. The BBS dataset comprises of 1,908 boards, in which a total of 7,446 students participate. An edge is assigned to each dialogue between two students, and it is defined as the appearance of the name of a student in the from- and to-field in each message. This yields a weighted network between the communicating students with an unambiguous group association of individuals. In contrast to a typical community network, where intracommunities (intercommunities) are strongly (weakly) tied, the BBS network contains hub members who participate in many boards simultaneously but are strongly tied, that is, they have a large degree and betweenness centrality and provide communication channels between communities. On the other hand, intracommunities are rather homogeneously and weakly connected. Such a structure, which has never been empirically characterized in the past, might provide a new perspective on social opinion formation in this digital era.

physics.data-an↗

arXiv2006

Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli

Recent genomic analyses on the cellular metabolic network show that reaction flux across enzymes are diverse and exhibit power-law behavior in its distribution. While one may guess that the reactions with larger fluxes are more likely to be lethal under the blockade of its catalyzing gene products or gene knockouts, we find, by in silico flux analysis, that the lethality rarely has correlations with the flux level owing to the widespread backup pathways innate in the genome-wide metabolism of \textit{Escherichia coli}. Lethal reactions, of which the deletion generates cascading failure of following reactions up to the biomass reaction, are identified in terms of the Boolean network scheme as well as the flux balance analysis. The avalanche size of a reaction, defined as the number of subsequently blocked reactions after its removal, turns out to be a useful measure of lethality. As a means to elucidate phenotypic robustness to a single deletion, we investigate synthetic lethality in reaction level, where simultaneous deletion of a pair of nonlethal reactions leads to the failure of the biomass reaction. Synthetic lethals identified via flux balance and Boolean scheme are consistently shown to act in parallel pathways, working in such a way that the backup machinery is compromised.

q-bio.MN↗

arXiv2006

Skeleton and fractal scaling in complex networks

We find that the fractal scaling in a class of scale-free networks originates from the underlying tree structure called skeleton, a special type of spanning tree based on the edge betweenness centrality. The fractal skeleton has the property of the critical branching tree. The original fractal networks are viewed as a fractal skeleton dressed with local shortcuts. An in-silico model with both the fractal scaling and the scale-invariance properties is also constructed. The framework of fractal networks is useful in understanding the utility and the redundancy in networked systems.

cond-mat.stat-mech↗

arXiv2006

Robustness of the avalanche dynamics in data packet transport on scale-free networks

We study the avalanche dynamics in the data packet transport on scale-free networks through a simple model. In the model, each vertex is assigned a capacity proportional to the load with a proportionality constant $1+a$. When the system is perturbed by a single vertex removal, the load of each vertex is redistributed, followed by subsequent failures of overloaded vertices. The avalanche size depends on the parameter $a$ as well as which vertex triggers it. We find that there exists a critical value $a_c$ at which the avalanche size distribution follows a power law. The critical exponent associated with it appears to be robust as long as the degree exponent is between 2 and 3, and is close in value to that of the distribution of the diameter changes by single vertex removal.

cond-mat.stat-mech↗

arXiv2006

Load distribution in weighted complex networks

We study the load distribution in weighted networks by measuring the effective number of optimal paths passing through a given vertex. The optimal path, along which the total cost is minimum, crucially depend on the cost distribution function $p_c(c)$. In the strong disorder limit, where $p_c(c)\sim c^{-1}$, the load distribution follows a power law both in the Erdős-Rényi (ER) random graphs and in the scale-free (SF) networks, and its characteristics are determined by the structure of the minimum spanning tree. The distribution of loads at vertices with a given vertex degree also follows the SF nature similar to the whole load distribution, implying that the global transport property is not correlated to the local structural information. Finally, we measure the effect of disorder by the correlation coefficient between vertex degree and load, finding that it is larger for ER networks than for SF networks.

cond-mat.stat-mech↗

arXiv2006

Nonlocal evolution of weighted scale-free networks

We introduce the notion of globally updating evolution for a class of weighted networks, in which the weight of a link is characterized by the amount of data packet transport flowing through it. By noting that the packet transport over the network is determined nonlocally, this approach can explain the generic nonlinear scaling between the strength and the degree of a node. We demonstrate by a simple model that the strength-driven evolution scheme recently introduced can be generalized to a nonlinear preferential attachment rule, generating the power-law behaviors in degree and in strength simultaneously.

cond-mat.stat-mech↗

arXiv2006

Intrinsic degree-correlations in static model of scale-free networks

We calculate the mean neighboring degree function $\bar k_{\rm{nn}}(k)$ and the mean clustering function $C(k)$ of vertices with degree $k$ as a function of $k$ in finite scale-free random networks through the static model. While both are independent of $k$ when the degree exponent $γ\geq 3$, they show the crossover behavior for $2 < γ< 3$ from $k$-independent behavior for small $k$ to $k$-dependent behavior for large $k$. The $k$-dependent behavior is analytically derived. Such a behavior arises from the prevention of self-loops and multiple edges between each pair of vertices. The analytic results are confirmed by numerical simulations. We also compare our results with those obtained from a growing network model, finding that they behave differently from each other.

cond-mat.stat-mech↗

arXiv2005

Bidding process in online auctions and winning strategy:rate equation approach

Online auctions have expanded rapidly over the last decade and have become a fascinating new type of business or commercial transaction in this digital era. Here we introduce a master equation for the bidding process that takes place in online auctions. We find that the number of distinct bidders who bid $k$ times, called the $k$-frequent bidder, up to the $t$-th bidding progresses as $n_k(t)\sim tk^{-2.4}$. The successfully transmitted bidding rate by the $k$-frequent bidder is obtained as $q_k(t) \sim k^{-1.4}$, independent of $t$ for large $t$. This theoretical prediction is in agreement with empirical data. These results imply that bidding at the last moment is a rational and effective strategy to win in an eBay auction.

physics.soc-ph↗

arXiv2005

Avalanche dynamics driven by adaptive rewirings in complex networks

We introduce a toy model displaying the avalanche dynamics of failure in scale-free networks. In the model, the network growth is based on the Barabási and Albert model and each node is assigned a capacity or tolerance, which is constant irrespective of node index. The degree of each node increases over time. When the degree of a node exceeds its capacity, it fails and each link connected to it is is rewired to other unconnected nodes by following the preferential attachment rule. Such a rewiring edge may trigger another failure. This dynamic process can occur successively, and it exhibits a self-organized critical behavior in which the avalanche size distribution follows a power law. The associated exponent is $τ\approx 2.6(1)$. The entire system breaks down when any rewired edges cannot locate target nodes: the time at which this occurs is referred to as the breaking time. We obtain the breaking time as a function of the capacity. Moreover, using extreme value statistics, we determine the distribution function of the breaking time.

cond-mat.stat-mech↗

arXiv2005

Modular synchronization in complex networks

We study the synchronization transition (ST) of a modified Kuramoto model on two different types of modular complex networks. It is found that the ST depends on the type of inter-modular connections. For the network with decentralized (centralized) inter-modular connections, the ST occurs at finite coupling constant (behaves abnormally). Such distinct features are found in the yeast protein interaction network and the Internet, respectively. Moreover, by applying the finite-size scaling analysis to an artificial network with decentralized inter-modular connections, we obtain the exponent associated with the order parameter of the ST to be $β\approx 1$ different from $β_{\rm MF} \approx 1/2$ obtained from the scale-free network with the same degree distribution but the absence of modular structure, corresponding to the mean field value.

cond-mat.stat-mech↗

arXiv2005

Extremal dynamics on complex networks: Analytic solutions

The Bak-Sneppen model displaying punctuated equilibria in biological evolution is studied on random complex networks. By using the rate equation and the random walk approaches, we obtain the analytic solution of the fitness threshold $x_c$ to be 1/( _f+1), where _f= / (= ) in the quenched (annealed) updating case, where is the n-th moment of the degree distribution. Thus, the threshold is zero (finite) for the degree exponent γ<3 (γ> 3) for the quenched case in the thermodynamic limit. The theoretical value x_c fits well to the numerical simulation data in the annealed case only. Avalanche size, defined as the duration of successive mutations below the threshold, exhibits a critical behavior as its distribution follows a power law, P_a(s) ~ s^{-3/2}.

cond-mat.stat-mech↗

arXiv2005

Spin Glass Phase Transition on Scale-Free Networks

We study the Ising spin glass model on scale-free networks generated by the static model using the replica method. Based on the replica-symmetric solution, we derive the phase diagram consisting of the paramagnetic (P), ferromagnetic (F), and spin glass (SG) phases as well as the Almeida-Thouless line as functions of the degree exponent $λ$, the mean degree $K$, and the fraction of ferromagnetic interactions $r$. To reflect the inhomogeneity of vertices, we modify the magnetization $m$ and the spin glass order parameter $q$ with vertex-weights. The transition temperature $T_c$ ($T_g$) between the P-F (P-SG) phases and the critical behaviors of the order parameters are found analytically. When $2 < λ< 3$, $T_c$ and $T_g$ are infinite, and the system is in the F phase or the mixed phase for $r > 1/2$, while it is in the SG phase at $r=1/2$. $m$ and $q$ decay as power-laws with increasing temperature with different $λ$-dependent exponents. When $λ> 3$, the $T_c$ and $T_g$ are finite and related to the percolation threshold. The critical exponents associated with $m$ and $q$ depend on $λ$ for $3 < λ< 5$ ($3 < λ< 4$) at the P-F (P-SG) boundary.

cond-mat.stat-mech↗

arXiv2005

Evolution of the Protein Interaction Network of Budding Yeast: Role of the Protein Family Compatibility Constraint

Understanding of how protein interaction networks (PIN) of living organisms have evolved or are organized can be the first stepping stone in unveiling how life works on a fundamental ground. Here we introduce a hybrid network model composed of the yeast PIN and the protein family interaction network. The essential ingredient of the model includes the protein family identity and its robustness under evolution, as well as the three previously proposed ones: gene duplication, divergence, and mutation. We investigate diverse structural properties of our model with parameter values relevant to yeast, finding that the model successfully reproduces the empirical data.

q-bio.MN↗

arXiv2005

Graph theoretic analysis of protein interaction networks of eukaryotes

Thanks to recent progress in high-throughput experimental techniques, the datasets of large-scale protein interactions of prototypical multicellular species, the nematode worm Caenorhabditis elegans and the fruit fly Drosophila melanogaster, have been assayed. The datasets are obtained mainly by using the yeast hybrid method, which contains false-positive and false-negative simultaneously. Accordingly, while it is desirable to test such datasets through further wet experiments, here we invoke recent developed network theory to test such high throughput datasets in a simple way. Based on the fact that the key biological processes indispensable to maintaining life are universal across eukaryotic species, and the comparison of structural properties of the protein interaction networks (PINs) of the two species with those of the yeast PIN, we find that while the worm and the yeast PIN datasets exhibit similar structural properties, the current fly dataset, though most comprehensively screened ever, does not reflect generic structural properties correctly as it is. The modularity is suppressed and the connectivity correlation is lacking. Addition of interlogs to the current fly dataset increases the modularity and enhances the occurrence of triangular motifs as well. The connectivity correlation function of the fly, however, remains distinct under such interlogs addition, for which we present a possible scenario through an in silico modeling.

q-bio.MN↗

arXiv2004

Evolution of scale-free random graphs: Potts model formulation

We study the bond percolation problem in random graphs of $N$ weighted vertices, where each vertex $i$ has a prescribed weight $P_i$ and an edge can connect vertices $i$ and $j$ with rate $P_iP_j$. The problem is solved by the $q\to 1$ limit of the $q$-state Potts model with inhomogeneous interactions for all pairs of spins. We apply this approach to the static model having $P_i\propto i^{-μ} (0<μ<1)$ so that the resulting graph is scale-free with the degree exponent $λ=1+1/μ$. The number of loops as well as the giant cluster size and the mean cluster size are obtained in the thermodynamic limit as a function of the edge density, and their associated critical exponents are also obtained. Finite-size scaling behaviors are derived using the largest cluster size in the critical regime, which is calculated from the cluster size distribution, and checked against numerical simulation results. We find that the process of forming the giant cluster is qualitatively different between the cases of $λ>3$ and $2 < λ<3$. While for the former, the giant cluster forms abruptly at the percolation transition, for the latter, however, the formation of the giant cluster is gradual and the mean cluster size for finite $N$ shows double peaks.

cond-mat.stat-mech↗