arXiv subjects

B. Schmittmann

Publications and source records attributed to B. Schmittmann.

At least 19 recordsLinked to original sources

arXiv2015

Spatial structures in a simple model of population dynamics for parasite-host interactions

Spatial patterning can be crucially important for understanding the behavior of interacting populations. Here we investigate a simple model of parasite and host populations in which parasites are random walkers that must come into contact with a host in order to reproduce. We focus on the spatial arrangement of parasites around a single host, and we derive using analytics and numerical simulations the necessary conditions placed on the parasite fecundity and lifetime for the populations long-term survival. We also show that the parasite population can be pushed to extinction by a large drift velocity, but, counterintuitively, a small drift velocity generally increases the parasite population.

q-bio.PE↗

arXiv2015

Extreme Thouless effect in a minimal model of dynamic social networks

In common descriptions of phase transitions, first order transitions are characterized by discontinuous jumps in the order parameter and normal fluctuations, while second order transitions are associated with no jumps and anomalous fluctuations. Outside this paradigm are systems exhibiting `mixed order transitions' displaying a mixture of these characteristics. When the jump is maximal and the fluctuations range over the entire range of allowed values, the behavior has been coined an `extreme Thouless effect'. Here, we report findings of such a phenomenon, in the context of dynamic, social networks. Defined by minimal rules of evolution, it describes a population of extreme introverts and extroverts, who prefer to have contacts with, respectively, no one or everyone. From the dynamics, we derive an exact distribution of microstates in the stationary state. With only two control parameters, $N_{I,E}$ (the number of each subgroup), we study collective variables of interest, e.g., $X$, the total number of $I$-$E $ links and the degree distributions. Using simulations and mean-field theory, we provide evidence that this system displays an extreme Thouless effect. Specifically, the fraction $X/\left( N_{I}N_{E}\right) $ jumps from $0$ to $1$ (in the thermodynamic limit) when $N_{I}$ crosses $N_{E}$, while all values appear with equal probability at $N_{I}=N_{E}$.

cond-mat.stat-mech↗

arXiv2014

Modeling interacting dynamic networks: II. Systematic study of the statistical properties of cross-links between two networks with preferred degrees

In a recent work \cite{LiuJoladSchZia13}, we introduced dynamic networks with preferred degrees and presented simulation and analytic studies of a single, homogeneous system as well as two interacting networks. Here, we extend these studies to a wider range of parameter space, in a more systematic fashion. Though the interaction we introduced seems simple and intuitive, it produced dramatically different behavior in the single- and two-network systems. Specifically, partitioning the single network into two identical sectors, we find the cross-link distribution to be a sharply peaked Gaussian. In stark contrast, we find a very broad and flat plateau in the case of two interacting identical networks. A sound understanding of this phenomenon remains elusive. Exploring more asymmetric interacting networks, we discover a kind of `universal behavior' for systems in which the `introverts' (nodes with smaller preferred degree) are far outnumbered. Remarkably, an approximation scheme for their degree distribution can be formulated, leading to very successful predictions.

physics.soc-ph↗

arXiv2012

Epidemic spreading on preferred degree adaptive networks

We study the standard SIS model of epidemic spreading on networks where individuals have a fluctuating number of connections around a preferred degree $κ$. Using very simple rules for forming such preferred degree networks, we find some unusual statistical properties not found in familiar Erdős-Rényi or scale free networks. By letting $κ$ depend on the fraction of infected individuals, we model the behavioral changes in response to how the extent of the epidemic is perceived. In our models, the behavioral adaptations can be either `blind' or `selective' -- depending on whether a node adapts by cutting or adding links to randomly chosen partners or selectively, based on the state of the partner. For a frozen preferred network, we find that the infection threshold follows the heterogeneous mean field result $λ_{c}/μ= / $ and the phase diagram matches the predictions of the annealed adjacency matrix (AAM) approach. With `blind' adaptations, although the epidemic threshold remains unchanged, the infection level is substantially affected, depending on the details of the adaptation. The `selective' adaptive SIS models are most interesting. Both the threshold and the level of infection changes, controlled not only by how the adaptations are implemented but also how often the nodes cut/add links (compared to the time scales of the epidemic spreading). A simple mean field theory is presented for the selective adaptations which capture the qualitative and some of the quantitative features of the infection phase diagram.

cond-mat.stat-mech↗

arXiv2012

Extraordinary variability and sharp transitions in a maximally frustrated dynamic network

Using Monte Carlo and analytic techniques, we study a minimal dynamic network involving two populations of nodes, characterized by different preferred degrees. Reminiscent of introverts and extroverts in a population, one set of nodes, labeled \textit{introverts} ($I$), prefers fewer contacts (a lower degree) than the other, labeled \textit{extroverts} ($E$). As a starting point, we consider an \textit{extreme} case, in which an $I$ simply cuts one of its links at random when chosen for updating, while an $E$ adds a link to a random unconnected individual (node). The model has only two control parameters, namely, the number of nodes in each group, $N_{I}$ and $N_{E}$). In the steady state, only the number of crosslinks between the two groups fluctuates, with remarkable properties: Its average ($X$) remains very close to 0 for all $N_{I}>N_{E}$ or near its maximum ($\mathcal{N}\equiv N_{I}N_{E}$) if $N_{I}<N_{E}$. At the transition ($N_{I}=N_{E}$), the fraction $X/\mathcal{N}$ wanders across a substantial part of $[0,1]$, much like a pure random walk. Mapping this system to an Ising model with spin-flip dynamics and unusual long-range interactions, we note that such fluctuations are far greater than those displayed in either first or second order transitions of the latter. Thus, we refer to the case here as an `extraordinary transition.' Thanks to the restoration of detailed balance and the existence of a `Hamiltonian,' several qualitative aspects of these remarkable phenomena can be understood analytically.

cond-mat.stat-mech↗

arXiv2011

Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments

The phenomenon of protein synthesis has been modeled in terms of totally asymmetric simple exclusion processes (TASEP) since 1968. In this article, we provide a tutorial of the biological and mathematical aspects of this approach. We also summarize several new results, concerned with limited resources in the cell and simple estimates for the current (protein production rate) of a TASEP with inhomogeneous hopping rates, reflecting the characteristics of real genes.

cond-mat.stat-mech↗

arXiv2010

Convection cells induced by spontaneous symmetry breaking

Ubiquitous in nature, convection cells are a clear signature of systems out-of-equilibrium. Typically, they are driven by external forces, like gravity (in combination with temperature gradients) or shear. In this article, we show the existence of such cells in possibly the simplest system, one that involves only a temperature gradient. In particular, we consider an Ising lattice gas on a square lattice, in contact with two thermal reservoirs, one at infinite temperature and another at $T$. When this system settles into a non-equilibrium stationary state, many interesting phenomena exist. One of these is the emergence of convection cells, driven by spontaneous symmetry breaking when $T$ is set below the critical temperature.

cond-mat.stat-mech↗

arXiv2009

Competition between Multiple Totally Asymmetric Simple Exclusion Processes for a Finite Pool of Resources

Using Monte Carlo simulations and a domain wall theory, we discuss the effect of coupling several totally asymmetric simple exclusion processes (TASEPs) to a finite reservoir of particles. This simple model mimics directed biological transport processes in the presence of finite resources, such as protein synthesis limited by a finite pool of ribosomes. If all TASEPs have equal length, we find behavior which is analogous to a single TASEP coupled to a finite pool. For the more generic case of chains with different lengths, several unanticipated new regimes emerge. A generalized domain wall theory captures our findings in good agreement with simulation results.

cond-mat.stat-mech↗

arXiv2008

Understanding the edge effect in TASEP with mean-field theoretic approaches

We study a totally asymmetric simple exclusion process (TASEP) with one defect site, hopping rate $q<1$, near the system boundary. Regarding our system as a pair of uniform TASEP's coupled through the defect, we study various methods to match a \emph{finite} TASEP and an \emph{infinite} one across a common boundary. Several approximation schemes are investigated. Utilizing the finite segment mean-field (FSMF) method, we set up a framework for computing the steady state current $J$ as a function of the entry rate $% α$ and $q$. For the case where the defect is located at the entry site, we obtain an analytical expression for $J(α, q) $ which is in good agreement with Monte Carlo simulation results. When the defect is located deeper in the bulk, we refined the scheme of MacDonald, et.al. [Biopolymers, \textbf{6}, 1 (1968)] and find reasonably good fits to the density profiles before the defect site. We discuss the strengths and limitations of each method, as well as possible avenues for further studies.

cond-mat.stat-mech↗

arXiv2008

Far-from-equilibrium transport with constrained resources

The totally asymmetric simple exclusion process (TASEP) is a well studied example of far-from-equilibrium dynamics. Here, we consider a TASEP with open boundaries but impose a global constraint on the total number of particles. In other words, the boundary reservoirs and the system must share a finite supply of particles. Using simulations and analytic arguments, we obtain the average particle density and current of the system, as a function of the boundary rates and the total number of particles. Our findings are relevant to biological transport problems if the availability of molecular motors becomes a rate-limiting factor.

cond-mat.stat-mech↗

arXiv2007

Inhomogeneous exclusion processes with extended objects: The effect of defect locations

We study the effects of local inhomogeneities, i.e., slow sites of hopping rate $q<1$, in a totally asymmetric simple exclusion process (TASEP) for particles of size $\ell \geq 1$ (in units of the lattice spacing). We compare the simulation results of $\ell =1$ and $\ell >1$ and notice that the existence of local defects has qualitatively similar effects on the steady state. We focus on the stationary current as well as the density profiles. If there is only a single slow site in the system, we observe a significant dependence of the current on the \emph{location} of the slow site for both $\ell =1$ and $\ell >1$ cases. When two slow sites are introduced, more intriguing phenomena emerge, e.g., dramatic decreases in the current when the two are close together. In addition, we study the asymptotic behavior when $q\to 0$. We also explore the associated density profiles and compare our findings to an earlier study using a simple mean-field theory. We then outline the biological significance of these effects.

cond-mat.stat-mech↗

arXiv2007

Lack of consensus in social systems

We propose an exactly solvable model for the dynamics of voters in a two-party system. The opinion formation process is modeled on a random network of agents. The dynamical nature of interpersonal relations is also reflected in the model, as the connections in the network evolve with the dynamics of the voters. In the infinite time limit, an exact solution predicts the emergence of consensus, for arbitrary initial conditions. However, before consensus is reached, two different metastable states can persist for exponentially long times. One state reflects a perfect balancing of opinions, the other reflects a completely static situation. An estimate of the associated lifetimes suggests that lack of consensus is typical for large systems.

physics.soc-ph↗

arXiv2007

Zero-range process with long-range interactions at a T-junction

A generalized zero-range process with a limited number of long-range interactions is studied as an example of a transport process in which particles at a T-junction make a choice of which branch to take based on traffic levels on each branch. The system is analysed with a self-consistent mean-field approximation which allows phase diagrams to be constructed. Agreement between the analysis and simulations is found to be very good.

cond-mat.stat-mech↗

arXiv2007

Power Spectra of the Total Occupancy in the Totally Asymmetric Simple Exclusion Process

As a solvable and broadly applicable model system, the totally asymmetric exclusion process enjoys iconic status in the theory of non-equilibrium phase transitions. Here, we focus on the time dependence of the total number of particles on a 1-dimensional open lattice, and its power spectrum. Using both Monte Carlo simulations and analytic methods, we explore its behavior in different characteristic regimes. In the maximal current phase and on the coexistence line (between high/low density phases), the power spectrum displays algebraic decay, with exponents -1.62 and -2.00, respectively. Deep within the high/low density phases, we find pronounced \emph{oscillations}, which damp into power laws. This behavior can be understood in terms of driven biased diffusion with conserved noise in the bulk.

cond-mat.stat-mech↗

arXiv2007

Universal properties of population dynamics with fluctuating resources

Starting from the well-known field theory for directed percolation, we describe an evolving population, near extinction, in an environment with its own nontrivial spatio-temporal dynamics. Here, we consider the special case where the environment follows a simple relaxational (Model A) dynamics. Two new operators emerge, with upper critical dimension of four, which couple the two theories in a nontrivial way. While the Wilson-Fisher fixed point remains completely unaffected, a mismatch of time scales destabilizes the usual DP fixed point, suggesting a crossover to a first order transition from the active (surviving) to the inactive (extinct) state.

cond-mat.stat-mech↗

arXiv2007

Coarsening of "clouds" and dynamic scaling in a far-from-equilibrium model system

A two-dimensional lattice gas of two species, driven in opposite directions by an external force, undergoes a jamming transition if the filling fraction is sufficiently high. Using Monte Carlo simulations, we investigate the growth of these jams ("clouds"), as the system approaches a non-equilibrium steady state from a disordered initial state. We monitor the dynamic structure factor $S(k_x,k_y;t)$ and find that the $k_x=0$ component exhibits dynamic scaling, of the form $S(0,k_y;t)=t^β\tilde{S}(k_yt^α)$. Over a significant range of times, we observe excellent data collapse with $α=1/2$ and $β=1$. The effects of varying filling fraction and driving force are discussed.

cond-mat.stat-mech↗

arXiv2007

Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states

One of the key features of non-equilibrium steady states (NESS) is the presence of nontrivial probability currents. We propose a general classification of NESS in which these currents play a central distinguishing role. As a corollary, we specify the transformations of the dynamic transition rates which leave a given NESS invariant. The formalism is most transparent within a continuous time master equation framework since it allows for a general graph-theoretical representation of the NESS. We discuss the consequences of these transformations for entropy production, present several simple examples, and explore some generalizations, to discrete time and continuous variables.

cond-mat.stat-mech↗

arXiv2007

Controlling surface morphologies by time-delayed feedback

We propose a new method to control the roughness of a growing surface, via a time-delayed feedback scheme. As an illustration, we apply this method to the Kardar-Parisi-Zhang equation in 1+1 dimensions and show that the effective growth exponent of the surface width can be stabilized at any desired value in the interval [0.25,0.33], for a significant length of time. The method is quite general and can be applied to a wide range of growth phenomena. A possible experimental realization is suggested.

cond-mat.mtrl-sci↗