arXiv subjects

Bastien Pasdeloup

Publications and source records attributed to Bastien Pasdeloup.

28 records · Page 2Linked to original sources

arXiv2021

Improving Classification Accuracy with Graph Filtering

In machine learning, classifiers are typically susceptible to noise in the training data. In this work, we aim at reducing intra-class noise with the help of graph filtering to improve the classification performance. Considered graphs are obtained by connecting samples of the training set that belong to a same class depending on the similarity of their representation in a latent space. We show that the proposed graph filtering methodology has the effect of asymptotically reducing intra-class variance, while maintaining the mean. While our approach applies to all classification problems in general, it is particularly useful in few-shot settings, where intra-class noise can have a huge impact due to the small sample selection. Using standardized benchmarks in the field of vision, we empirically demonstrate the ability of the proposed method to slightly improve state-of-the-art results in both cases of few-shot and standard classification.

stat.ML↗

arXiv2020

An Approach for Clustering Subjects According to Similarities in Cell Distributions within Biopsies

In this paper, we introduce a novel and interpretable methodology to cluster subjects suffering from cancer, based on features extracted from their biopsies. Contrary to existing approaches, we propose here to capture complex patterns in the repartitions of their cells using histograms, and compare subjects on the basis of these repartitions. We describe here our complete workflow, including creation of the database, cells segmentation and phenotyping, computation of complex features, choice of a distance function between features, clustering between subjects using that distance, and survival analysis of obtained clusters. We illustrate our approach on a database of hematoxylin and eosin (H&E)-stained tissues of subjects suffering from Stage I lung adenocarcinoma, where our results match existing knowledge in prognosis estimation with high confidence.

q-bio.QM↗

arXiv2018

A neighborhood-preserving translation operator on graphs

In this paper, we introduce translation operators on graphs. Contrary to spectrally-defined translations in the framework of graph signal processing, our operators mimic neighborhood-preserving properties of translation operators defined in Euclidean spaces directly in the vertex domain, and therefore do not deform a signal as it is translated. We show that in the case of grid graphs built on top of a metric space, these operators exactly match underlying Euclidean translations, suggesting that they completely leverage the underlying metric. More generally, these translations are defined on any graph, and can therefore be used to process signals on those graphs. We show that identifying proposed translations is in general an NP-Complete problem. To cope with this issue, we introduce relaxed versions of these operators, and illustrate translation of signals on random graphs.

cs.DM↗

arXiv2018

Convolutional neural networks on irregular domains based on approximate vertex-domain translations

We propose a generalization of convolutional neural networks (CNNs) to irregular domains, through the use of a translation operator on a graph structure. In regular settings such as images, convolutional layers are designed by translating a convolutional kernel over all pixels, thus enforcing translation equivariance. In the case of general graphs however, translation is not a well-defined operation, which makes shifting a convolutional kernel not straightforward. In this article, we introduce a methodology to allow the design of convolutional layers that are adapted to signals evolving on irregular topologies, even in the absence of a natural translation. Using the designed layers, we build a CNN that we train using the initial set of signals. Contrary to other approaches that aim at extending CNNs to irregular domains, we incorporate the classical settings of CNNs for 2D signals as a particular case of our approach. Designing convolutional layers in the vertex domain directly implies weight sharing, which in other approaches is generally estimated a posteriori using heuristics.

cs.DM↗

arXiv2017

Evaluating Graph Signal Processing for Neuroimaging Through Classification and Dimensionality Reduction

Graph Signal Processing (GSP) is a promising framework to analyze multi-dimensional neuroimaging datasets, while taking into account both the spatial and functional dependencies between brain signals. In the present work, we apply dimensionality reduction techniques based on graph representations of the brain to decode brain activity from real and simulated fMRI datasets. We introduce seven graphs obtained from a) geometric structure and/or b) functional connectivity between brain areas at rest, and compare them when performing dimension reduction for classification. We show that mixed graphs using both a) and b) offer the best performance. We also show that graph sampling methods perform better than classical dimension reduction including Principal Component Analysis (PCA) and Independent Component Analysis (ICA).

cs.CV↗

arXiv2017

Characterization and Inference of Graph Diffusion Processes from Observations of Stationary Signals

Many tools from the field of graph signal processing exploit knowledge of the underlying graph's structure (e.g., as encoded in the Laplacian matrix) to process signals on the graph. Therefore, in the case when no graph is available, graph signal processing tools cannot be used anymore. Researchers have proposed approaches to infer a graph topology from observations of signals on its nodes. Since the problem is ill-posed, these approaches make assumptions, such as smoothness of the signals on the graph, or sparsity priors. In this paper, we propose a characterization of the space of valid graphs, in the sense that they can explain stationary signals. To simplify the exposition in this paper, we focus here on the case where signals were i.i.d. at some point back in time and were observed after diffusion on a graph. We show that the set of graphs verifying this assumption has a strong connection with the eigenvectors of the covariance matrix, and forms a convex set. Along with a theoretical study in which these eigenvectors are assumed to be known, we consider the practical case when the observations are noisy, and experimentally observe how fast the set of valid graphs converges to the set obtained when the exact eigenvectors are known, as the number of observations grows. To illustrate how this characterization can be used for graph recovery, we present two methods for selecting a particular point in this set under chosen criteria, namely graph simplicity and sparsity. Additionally, we introduce a measure to evaluate how much a graph is adapted to signals under a stationarity assumption. Finally, we evaluate how state-of-the-art methods relate to this framework through experiments on a dataset of temperatures.

cs.DS↗

arXiv2016

Neighborhood-Preserving Translations on Graphs

In many domains (e.g. Internet of Things, neuroimaging) signals are naturally supported on graphs. These graphs usually convey information on similarity between the values taken by the signal at the corresponding vertices. An interest of using graphs is that it allows to define ad hoc operators to perform signal processing. Among them, ones of paramount importance in many tasks are translations. In this paper we are interested in defining translations on graphs using a few simple properties. Namely we propose to define translations as functions from vertices to adjacent ones, that preserve neighborhood properties of the graph. We show that our definitions, contrary to other works on the subject, match usual translations on grid graphs.

cs.DM↗

arXiv2016

Graph reconstruction from the observation of diffused signals

Signal processing on graphs has received a lot of attention in the recent years. A lot of techniques have arised, inspired by classical signal processing ones, to allow studying signals on any kind of graph. A common aspect of these technique is that they require a graph correctly modeling the studied support to explain the signals that are observed on it. However, in many cases, such a graph is unavailable or has no real physical existence. An example of this latter case is a set of sensors randomly thrown in a field which obviously observe related information. To study such signals, there is no intuitive choice for a support graph. In this document, we address the problem of inferring a graph structure from the observation of signals, under the assumption that they were issued of the diffusion of initially i.i.d. signals. To validate our approach, we design an experimental protocol, in which we diffuse signals on a known graph. Then, we forget the graph, and show that we are able to retrieve it very precisely from the only knowledge of the diffused signals.

cs.IT↗

arXiv2016

Towards a characterization of the uncertainty curve for graphs

Signal processing on graphs is a recent research domain that aims at generalizing classical tools in signal processing, in order to analyze signals evolving on complex domains. Such domains are represented by graphs, for which one can compute a particular matrix, called the normalized Laplacian. It was shown that the eigenvalues of this Laplacian correspond to the frequencies of the Fourier domain in classical signal processing. Therefore, the frequency domain is not the same for every support graph. A consequence of this is that there is no non-trivial generalization of Heisenberg's uncertainty principle, that states that a signal cannot be fully localized both in the time domain and in the frequency domain. A way to generalize this principle, introduced by Agaskar and Lu, consists in determining a curve that represents a lower bound on the compromise between precision in the graph domain and precision in the spectral domain. The aim of this paper is to propose a characterization of the signals achieving this curve, for a larger class of graphs than the one studied by Agaskar and Lu.

cs.OH↗

arXiv2016

Toward An Uncertainty Principle For Weighted Graphs

The uncertainty principle states that a signal cannot be localized both in time and frequency. With the aim of extending this result to signals on graphs, Agaskar&Lu introduce notions of graph and spectral spreads. They show that a graph uncertainty principle holds for some families of unweighted graphs. This principle states that a signal cannot be simultaneously localized both in graph and spectral domains. In this paper, we aim to extend their work to weighted graphs. We show that a naive extension of their definitions leads to inconsistent results such as discontinuity of the graph spread when regarded as a function of the graph structure. To circumvent this problem, we propose another definition of graph spread that relies on an inverse similarity matrix. We also discuss the choice of the distance function that appears in this definition. Finally, we compute and plot uncertainty curves for families of weighted graphs.

cs.DM↗