arXiv subjects

Benedict J. Leimkuhler

Publications and source records attributed to Benedict J. Leimkuhler.

3 recordsLinked to original sources

arXiv2002

Generating Generalized Distributions from Dynamical Simulation

We present a general molecular-dynamics simulation scheme, based on the Nose' thermostat, for sampling according to arbitrary phase space distributions. We formulate numerical methods based on both Nose'-Hoover and Nose'-Poincare' thermostats for two specific classes of distributions; namely, those that are functions of the system Hamiltonian and those for which position and momentum are statistically independent. As an example, we propose a generalized variable temperature distribution that designed to accelerate sampling in molecular systems.

cond-mat.stat-mech↗

arXiv2000

On the approximation of Feynman-Kac path integrals for quantum statistical mechanics

Discretizations of the Feynman-Kac path integral representation of the quantum mechanical density matrix are investigated. Each infinite-dimensional path integral is approximated by a Riemann integral over a finite-dimensional function space, by restricting the integration to a subspace of all admissible paths. Using this process, a wide class of methods can be derived, with each method corresponding to a different choice for the approximating subspace. The traditional ``short-time'' approximation and ``Fourier discretization'' can be recovered from this approach, using linear and spectral basis functions respectively. As an illustration, a novel method is formulated using cubic elements and is shown to have improved convergence properties when applied to a simple model problem.

cond-mat.stat-mech↗

arXiv1999

A molecular-dynamics algorithm for mixed hard-core/continuous potentials

We present a new molecular-dynamics algorithm for integrating the equations of motion for a system of particles interacting with mixed continuous/impulsive forces. This method, which we call Impulsive Verlet, is constructed using operator splitting techniques similar to those that have been used successfully to generate a variety molecular-dynamics integrators. In numerical experiments, the Impulsive Verlet method is shown to be superior to previous methods with respect to stability and energy conservation in long simulations.

physics.chem-ph↗