arXiv subjects

Beniamino Hadj-Amar

Publications and source records attributed to Beniamino Hadj-Amar.

8 recordsLinked to original sources

arXiv2026

Frequency Selection in Bayesian Spectral Modeling of Time Series Data with Applications to Wearable Device Measurements

This paper introduces a Bayesian spike-and-slab framework for spectral analysis of time series data. The proposed method combines frequency selection and dimensionality reduction with a refined grid of candidate frequencies, enabling high-resolution recovery of oscillatory components while promoting sparsity through a structured spike-and-slab prior. A stochastic search algorithm efficiently explores the posterior space, yielding posterior inclusion probabilities that quantify the relevance of each frequency. We extend the framework to multivariate signals via a hierarchical prior on frequency inclusion patterns, allowing the model to capture both shared and component-specific rhythms across multiple time series. Extensive simulation studies demonstrate the method's robustness and superior performance in frequency estimation and spectral power reconstruction compared to existing approaches. Applied to actigraphy data from individuals with partial-onset seizures, the univariate model identifies clinically relevant circadian and ultradian rhythms. In a second application, for the joint analysis of physical activity and skin temperature from a healthy individual, the multivariate model reveals partially overlapping rhythmic components consistent with known physiological coupling. This work establishes a powerful and interpretable approach to spectral analysis, with broad applicability to wearable data, chronobiology, and personalized health monitoring.

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arXiv2026

Bayesian Variable Selection with the Quasi-Posterior

The Bayesian approach provides powerful methods for variable selection. The ability to incorporate sparsity through prior beliefs and account for parameter uncertainty allows Bayesian variable selection to consistently identify which of the variables are active and exhibit strong finite-sample performance. However, Bayesian methods require the correct specification of full likelihoods for the data, and there is increasing awareness of the problems that model misspecification causes for variable selection. Current approaches to mitigate misspecification either require complex models, detracting from the interpretability of the variable selection task, or move outside rigorous Bayesian uncertainty quantification and provide no recognised method for variable selection. This paper establishes the model quasi-posterior as a principled tool for variable selection. We prove that the model quasi-posterior shares desirable properties of Bayesian variable selection without requiring full likelihood specification. Instead, the quasi-posterior combines a prior with a quasi-likelihood and requires only specification of mean and variance functions, and is therefore robust to other aspects of the data. Marginalising the quasi-likelihood is analytically possible for linear regression, and Laplace approximations are used beyond this to ensure computational tractability. Extensive simulation studies illustrate improved variable selection accuracy across diverse data-generating scenarios when compared with likelihood-based Bayesian variable selection and lasso-penalized methods. We further demonstrate practical relevance through applications to real datasets from social science and genomics.

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arXiv2025

Discrete Autoregressive Switching Processes with Cumulative Shrinkage Priors for Graphical Modeling of Time Series Data

We propose a flexible Bayesian approach for sparse Gaussian graphical modeling of multivariate time series. We account for temporal correlation in the data by assuming that observations are characterized by an underlying and unobserved hidden discrete autoregressive process. We assume multivariate Gaussian emission distributions and capture spatial dependencies by modeling the state-specific precision matrices via graphical horseshoe priors. We characterize the mixing probabilities of the hidden process via a cumulative shrinkage prior that accommodates zero-inflated parameters for non-active components, and further incorporate a sparsity-inducing Dirichlet prior to estimate the effective number of states from the data. For posterior inference, we develop a sampling procedure that allows estimation of the number of discrete autoregressive lags and the number of states, and that cleverly avoids having to deal with the changing dimensions of the parameter space. We thoroughly investigate performance of our proposed methodology through several simulation studies. We further illustrate the use of our approach for the estimation of dynamic brain connectivity based on fMRI data collected on a subject performing a task-based experiment on latent learning

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arXiv2025

Bayesian Covariate-Dependent Circadian Modeling of Rest-Activity Rhythms

We propose a Bayesian covariate-dependent anti-logistic circadian model for analyzing activity data collected via wrist-worn wearable devices. The proposed approach integrates covariates into the modeling of the amplitude and phase parameters, facilitating cohort-level analysis with enhanced flexibility and interpretability. To promote model sparsity, we employ an l_1-ball projection prior, enabling precise control over complexity while identifying significant predictors. We assess performances on simulated data and then apply the method to real-world actigraphy data from people with epilepsy. Our results demonstrate the model's effectiveness in uncovering complex relationships among demographic, psychological, and medical factors influencing rest-activity rhythms, offering insights for personalized clinical assessments and healthcare interventions.

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arXiv2024

Bayesian Sparse Vector Autoregressive Switching Models with Application to Human Gesture Phase Segmentation

We propose a sparse vector autoregressive (VAR) hidden semi-Markov model (HSMM) for modeling temporal and contemporaneous (e.g. spatial) dependencies in multivariate nonstationary time series. The HSMM's generic state distribution is embedded in a special transition matrix structure, facilitating efficient likelihood evaluations and arbitrary approximation accuracy. To promote sparsity of the VAR coefficients, we deploy an $l_1$-ball projection prior, which combines differentiability with a positive probability of obtaining exact zeros, achieving variable selection within each switching state. This also facilitates posterior estimation via Hamiltonian Monte Carlo (HMC). We further place non-local priors on the parameters of the HSMM dwell distribution improving the ability of Bayesian model selection to distinguish whether the data is better supported by the simpler hidden Markov model (HMM), or the more flexible HSMM. Our proposed methodology is illustrated via an application to human gesture phase segmentation based on sensor data, where we successfully identify and characterize the periods of rest and active gesturing, as well as the dynamical patterns involved in the gesture movements associated with each of these states.

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arXiv2022

Bayesian Approximations to Hidden Semi-Markov Models for Telemetric Monitoring of Physical Activity

We propose a Bayesian hidden Markov model for analyzing time series and sequential data where a special structure of the transition probability matrix is embedded to model explicit-duration semi-Markovian dynamics. Our formulation allows for the development of highly flexible and interpretable models that can integrate available prior information on state durations while keeping a moderate computational cost to perform efficient posterior inference. We show the benefits of choosing a Bayesian approach for HSMM estimation over its frequentist counterpart, in terms of model selection and out-of-sample forecasting, also highlighting the computational feasibility of our inference procedure whilst incurring negligible statistical error. The use of our methodology is illustrated in an application relevant to e-Health, where we investigate rest-activity rhythms using telemetric activity data collected via a wearable sensing device. This analysis considers for the first time Bayesian model selection for the form of the explicit state dwell distribution. We further investigate the inclusion of a circadian covariate into the emission density and estimate this in a data-driven manner.

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arXiv2021

Identifying the Recurrence of Sleep Apnea Using a Harmonic Hidden Markov Model

We propose to model time-varying periodic and oscillatory processes by means of a hidden Markov model where the states are defined through the spectral properties of a periodic regime. The number of states is unknown along with the relevant periodicities, the role and number of which may vary across states. We address this inference problem by a Bayesian nonparametric hidden Markov model assuming a sticky hierarchical Dirichlet process for the switching dynamics between different states while the periodicities characterizing each state are explored by means of a trans-dimensional Markov chain Monte Carlo sampling step. We develop the full Bayesian inference algorithm and illustrate the use of our proposed methodology for different simulation studies as well as an application related to respiratory research which focuses on the detection of apnea instances in human breathing traces.

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arXiv2019

Bayesian Model Search for Nonstationary Periodic Time Series

We propose a novel Bayesian methodology for analyzing nonstationary time series that exhibit oscillatory behaviour. We approximate the time series using a piecewise oscillatory model with unknown periodicities, where our goal is to estimate the change-points while simultaneously identifying the potentially changing periodicities in the data. Our proposed methodology is based on a trans-dimensional Markov chain Monte Carlo (MCMC) algorithm that simultaneously updates the change-points and the periodicities relevant to any segment between them. We show that the proposed methodology successfully identifies time changing oscillatory behaviour in two applications which are relevant to e-Health and sleep research, namely the occurrence of ultradian oscillations in human skin temperature during the time of night rest, and the detection of instances of sleep apnea in plethysmographic respiratory traces.

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