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Benoît Liquet

Publications and source records attributed to Benoît Liquet.

2 recordsLinked to original sources

Nonstationary Spatial Process Models with Spatially Varying Covariance Kernels

Building spatial process models that capture nonstationary behavior while delivering computationally efficient inference is challenging. Nonstationary spatially varying kernels (see, e.g., Paciorek, 2003) offer flexibility and richness, but computation is impeded by high-dimensional parameter spaces resulting from spatially varying process parameters. Matters are exacerbated if the number of locations recording measurements is massive. With limited theoretical tractability, obviating computational bottlenecks requires synergy between model construction and algorithm development. We build a class of scalable nonstationary spatial process models using spatially varying covariance kernels. We implement a Bayesian modeling framework using Hybrid Monte Carlo with nested interweaving. We conduct experiments on synthetic data sets to explore model selection and parameter identifiability, and assess inferential improvements accrued from nonstationary modeling. We illustrate strengths and pitfalls with a data set on remote sensed normalized difference vegetation index.

stat.ME↗

Improving performances of MCMC for Nearest Neighbor Gaussian Process models with full data augmentation

Even though Nearest Neighbor Gaussian Processes (NNGP) alleviate considerably MCMC implementation of Bayesian space-time models, they do not solve the convergence problems caused by high model dimension. Frugal alternatives such as response or collapsed algorithms are an answer.gree Our approach is to keep full data augmentation but to try and make it more efficient. We present two strategies to do so. The first scheme is to pay a particular attention to the seemingly trivial fixed effects of the model. We show empirically that re-centering the latent field on the intercept critically improves chain behavior. We extend this approach to other fixed effects that may interfere with a coherent spatial field. We propose a simple method that requires no tuning while remaining affordable thanks to NNGP's sparsity. The second scheme accelerates the sampling of the random field using Chromatic samplers. This method makes long sequential simulation boil down to group-parallelized or group-vectorized sampling. The attractive possibility to parallelize NNGP likelihood can therefore be carried over to field sampling. We present a R implementation of our methods for Gaussian fields in the public repository https://github.com/SebastienCoube/Improving_NNGP_full_augmentation . An extensive vignette is provided. We run our implementation on two synthetic toy examples along with the state of the art package spNNGP. Finally, we apply our method on a real data set of lead contamination in the United States of America mainland.

stat.CO↗