arXiv subjects

Benrui Tang

Publications and source records attributed to Benrui Tang.

5 recordsLinked to original sources

arXiv2026

GPUMDkit: A User-Friendly Toolkit for GPUMD and NEP

Machine-learned interatomic potentials have revolutionized molecular dynamics simulations by providing quantum-mechanical accuracy at empirical-potential speeds. The graphics processing unit molecular dynamics (GPUMD) package, featuring the highly efficient neuroevolution potential (NEP) framework, has emerged as a powerful tool in this domain. However, the complexity of force field development, active learning, and trajectory post-processing often requires extensive manual scripting, imposing a steep learning curve on new users. To address this, we present GPUMDkit, a comprehensive and user-friendly toolkit that streamlines the entire simulation workflow for GPUMD and NEP. GPUMDkit integrates a suite of essential functionalities, including format conversion, structure sampling, property calculation, and data visualization, accessible through both interactive and command-line interfaces. Its modular, extensible architecture ensures accessibility for users of all experience levels while allowing seamless integration of new features. By automating complex tasks and enhancing productivity, GPUMDkit substantially lowers the barrier to using GPUMD and NEP programs. This article describes the program architecture and demonstrates its capabilities through practical applications.

cond-mat.mtrl-sci↗

arXiv2026

qNEP: A highly efficient neuroevolution potential with dynamic charges for large-scale atomistic simulations

Although electrostatics can be incorporated into machine-learned interatomic potentials, existing approaches are computationally very demanding, limiting large-scale, long-time simulations of electrostatics-driven phenomena such as dielectric response, infrared activity, and field-matter coupling. Here, we extend the neuroevolution potential (NEP), a highly efficient machine-learned interatomic potential, to a charge-aware framework (qNEP) by introducing explicit, environment-dependent partial charges. Each ionic partial charge is represented by a neural network as a function of the local descriptor vector, analogous to the NEP site-energy model. This formulation enables the direct prediction of the Born effective charge tensor for each ion and, consequently, the polarization. As a result, dielectric properties, infrared spectra, and coupling to external electric fields can be evaluated within a unified framework. We derive consistent expressions for the forces and virials that explicitly account for the position dependence of the partial charges. The qNEP method has been implemented in the free-and-open-source GPUMD package, with support for both Ewald summation and particle-particle particle-mesh treatments of electrostatics. We demonstrate the accuracy and efficiency of the qNEP approach through representative applications to water, Li7La3Zr2O12, BaTiO3, and a magnesium-water interface. These results show that qNEP enables accurate atomistic simulations with explicit long-range electrostatics, scalable to million-atom systems on nanosecond time scales using consumer-grade GPUs.

physics.comp-ph↗

arXiv2025

Heat transport in superionic materials via machine-learned molecular dynamics

Precise modeling and understanding of heat transport in the superionic phase are of great interest. Although simulations combining Green-Kubo (GK) molecular dynamics with machine-learned potentials (MLPs) stand as a promising approach, substantial challenges remain due to the crucial impact of atomic diffusion. Here, we first show that the thermal conductivity (${\kappa}$) of superionic materials calculated via conventional GK integral of the energy flux varies notably with the MLP model. Subsequently, we highlight that reliable, model-independent $\kappa$ values can be obtained by applying Onsager's reciprocal relations to correctly capture the coupled heat and mass transport. Remarkably, an anomalously invariant $\kappa$ can be observed over a wide temperature range, distinct from the characteristic trends in traditional crystals and glasses. In addition, we illustrate that conventional $\kappa$ decompositions into kinetic, potential, and cross terms suffer from ambiguities in the physical interpretation, despite their mathematical rigor. Finally, we propose a criterion for the necessity of the Onsager correction and reveal the underlying mechanism as a competition between thermally and chemically driven ion fluxes.

cond-mat.mtrl-sci↗

arXiv2025

NEP89: Universal neuroevolution potential for inorganic and organic materials across 89 elements

While machine-learned interatomic potentials offer near-quantum-mechanical accuracy for atomistic simulations, many are material-specific or computationally intensive, limiting their broader use. Here, we introduce NEP89, a foundation model based on neuroevolution potential architecture, delivering near-empirical-potential speed and high accuracy across 89 elements. A compact yet comprehensive training dataset covering inorganic and organic materials was curated through descriptor-space subsampling and iterative refinement across multiple datasets. NEP89 achieves competitive accuracy compared to representative foundation models while being three to four orders of magnitude more computationally efficient, enabling previously impractical large-scale atomistic simulations of inorganic and organic systems. In addition to its out-of-the-box applicability to diverse scenarios, including million-atom-scale compression of compositionally complex alloys, ion diffusion in solid-state electrolytes and water, rocksalt dissolution, methane combustion, and protein-ligand dynamics, NEP89 also supports fine-tuning for rapid adaptation to user-specific applications, such as mechanical, thermal, structural, and spectral properties of two-dimensional materials, metallic glasses, and organic crystals.

cond-mat.mtrl-sci↗

arXiv2024

Million-atom heat transport simulations of polycrystalline graphene approaching first-principles accuracy enabled by neuroevolution potential on desktop GPUs

First-principles molecular dynamics simulations of heat transport in systems with large-scale structural features are challenging due to their high computational cost. Here, using polycrystalline graphene as a case study, we demonstrate the feasibility of simulating heat transport with near first-principles accuracy in systems containing over 1.4 million atoms, achievable even with consumer desktop GPUs. This is enabled by the highly efficient neuroevolution potential (NEP) approach, as implemented in the open-source GPUMD package. Leveraging the NEP model's accuracy and efficiency, we quantify the reduction in thermal conductivity of polycrystalline graphene due to grain boundaries with varying grain sizes, resolving contributions from in-plane and out-of-plane (flexural) phonon modes. Additionally, we find that grain boundaries can lead to finite thermal conductivity even under significant tensile strain, in contrast to the divergent behavior observed in pristine graphene under similar conditions, indicating that grain boundaries may play a crucial role in thermal transport in low-dimensional momentum-conserving systems. These findings could offer insights for interpreting experimental observations, given the widespread presence of both large-scale grain boundaries and external strains in real materials. The demonstrated ability to simulate millions of atoms with near-first-principles accuracy on consumer desktop GPUs using the NEP approach will help make large-scale high-fidelity atomistic simulations more accessible to the broader research community.

cond-mat.mtrl-sci↗