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Berkin Deniz Kahya

Publications and source records attributed to Berkin Deniz Kahya.

2 recordsLinked to original sources

Evaluation of Phonetic Encoding Algorithms on Transcription Datasets

In this work, a novel evaluation scheme built on a generalized variant of the Rand Index measure, namely, the Hüllermeier-Rifqi Index, is proposed in order to assess how well phonetic encoding algorithms conform to word-based transcriptions in IPA (International Phonetic Alphabet) notation. For this objective, the discordance score is obtained by calculating the absolute difference between the pairwise similarity values of ground-truth transcriptions and those of corresponding phonetic encodings, which are computed using normalized edit distance as a permutation dependent string metric. The resulting score is subsequently adjusted with respect to that of a random string generator incorporating the same alphabet as the encoder under consideration. A wide range of phonetic encoders were evaluated as such on multi-lingual transcription datasets along with their recall capabilities based on the collision rate. The validity of the proposed scheme is further supported by its applicability in measuring the orthographic transparency of a language when the writing system is viewed as an inherent phonetic representation.

cs.CL↗

An ensemble deep learning approach to detect tumors on Mohs micrographic surgery slides

Mohs micrographic surgery (MMS) is the gold standard technique for removing high risk nonmelanoma skin cancer however, intraoperative histopathological examination demands significant time, effort, and professionality. The objective of this study is to develop a deep learning model to detect basal cell carcinoma (BCC) and artifacts on Mohs slides. A total of 731 Mohs slides from 51 patients with BCCs were used in this study, with 91 containing tumor and 640 without tumor which was defined as non-tumor. The dataset was employed to train U-Net based models that segment tumor and non-tumor regions on the slides. The segmented patches were classified as tumor, or non-tumor to produce predictions for whole slide images (WSIs). For the segmentation phase, the deep learning model success was measured using a Dice score with 0.70 and 0.67 value, area under the curve (AUC) score with 0.98 and 0.96 for tumor and non-tumor, respectively. For the tumor classification, an AUC of 0.98 for patch-based detection, and AUC of 0.91 for slide-based detection was obtained on the test dataset. We present an AI system that can detect tumors and non-tumors in Mohs slides with high success. Deep learning can aid Mohs surgeons and dermatopathologists in making more accurate decisions.

cs.CV↗