arXiv subjects

Bernhard Pfahringer

Publications and source records attributed to Bernhard Pfahringer.

At least 37 records · Page 2Linked to original sources

arXiv2022

A simple but strong baseline for online continual learning: Repeated Augmented Rehearsal

Online continual learning (OCL) aims to train neural networks incrementally from a non-stationary data stream with a single pass through data. Rehearsal-based methods attempt to approximate the observed input distributions over time with a small memory and revisit them later to avoid forgetting. Despite its strong empirical performance, rehearsal methods still suffer from a poor approximation of the loss landscape of past data with memory samples. This paper revisits the rehearsal dynamics in online settings. We provide theoretical insights on the inherent memory overfitting risk from the viewpoint of biased and dynamic empirical risk minimization, and examine the merits and limits of repeated rehearsal. Inspired by our analysis, a simple and intuitive baseline, Repeated Augmented Rehearsal (RAR), is designed to address the underfitting-overfitting dilemma of online rehearsal. Surprisingly, across four rather different OCL benchmarks, this simple baseline outperforms vanilla rehearsal by 9%-17% and also significantly improves state-of-the-art rehearsal-based methods MIR, ASER, and SCR. We also demonstrate that RAR successfully achieves an accurate approximation of the loss landscape of past data and high-loss ridge aversion in its learning trajectory. Extensive ablation studies are conducted to study the interplay between repeated and augmented rehearsal and reinforcement learning (RL) is applied to dynamically adjust the hyperparameters of RAR to balance the stability-plasticity trade-off online. Code is available at https://github.com/YaqianZhang/RepeatedAugmentedRehearsal

cs.LG↗

arXiv2022

Balancing Performance and Energy Consumption of Bagging Ensembles for the Classification of Data Streams in Edge Computing

In recent years, the Edge Computing (EC) paradigm has emerged as an enabling factor for developing technologies like the Internet of Things (IoT) and 5G networks, bridging the gap between Cloud Computing services and end-users, supporting low latency, mobility, and location awareness to delay-sensitive applications. Most solutions in EC employ machine learning (ML) methods to perform data classification and other information processing tasks on continuous and evolving data streams. Usually, such solutions have to cope with vast amounts of data that come as data streams while balancing energy consumption, latency, and the predictive performance of the algorithms. Ensemble methods achieve remarkable predictive performance when applied to evolving data streams due to the combination of several models and the possibility of selective resets. This work investigates strategies for optimizing the performance (i.e., delay, throughput) and energy consumption of bagging ensembles to classify data streams. The experimental evaluation involved six state-of-art ensemble algorithms (OzaBag, OzaBag Adaptive Size Hoeffding Tree, Online Bagging ADWIN, Leveraging Bagging, Adaptive RandomForest, and Streaming Random Patches) applying five widely used machine learning benchmark datasets with varied characteristics on three computer platforms. Such strategies can significantly reduce energy consumption in 96% of the experimental scenarios evaluated. Despite the trade-offs, it is possible to balance them to avoid significant loss in predictive performance.

cs.LG↗

arXiv2021

Improving the performance of bagging ensembles for data streams through mini-batching

Often, machine learning applications have to cope with dynamic environments where data are collected in the form of continuous data streams with potentially infinite length and transient behavior. Compared to traditional (batch) data mining, stream processing algorithms have additional requirements regarding computational resources and adaptability to data evolution. They must process instances incrementally because the data's continuous flow prohibits storing data for multiple passes. Ensemble learning achieved remarkable predictive performance in this scenario. Implemented as a set of (several) individual classifiers, ensembles are naturally amendable for task parallelism. However, the incremental learning and dynamic data structures used to capture the concept drift increase the cache misses and hinder the benefit of parallelism. This paper proposes a mini-batching strategy that can improve memory access locality and performance of several ensemble algorithms for stream mining in multi-core environments. With the aid of a formal framework, we demonstrate that mini-batching can significantly decrease the reuse distance (and the number of cache misses). Experiments on six different state-of-the-art ensemble algorithms applying four benchmark datasets with varied characteristics show speedups of up to 5X on 8-core processors. These benefits come at the expense of a small reduction in predictive performance.

cs.LG↗

arXiv2021

Improving Predictions of Tail-end Labels using Concatenated BioMed-Transformers for Long Medical Documents

Multi-label learning predicts a subset of labels from a given label set for an unseen instance while considering label correlations. A known challenge with multi-label classification is the long-tailed distribution of labels. Many studies focus on improving the overall predictions of the model and thus do not prioritise tail-end labels. Improving the tail-end label predictions in multi-label classifications of medical text enables the potential to understand patients better and improve care. The knowledge gained by one or more infrequent labels can impact the cause of medical decisions and treatment plans. This research presents variations of concatenated domain-specific language models, including multi-BioMed-Transformers, to achieve two primary goals. First, to improve F1 scores of infrequent labels across multi-label problems, especially with long-tail labels; second, to handle long medical text and multi-sourced electronic health records (EHRs), a challenging task for standard transformers designed to work on short input sequences. A vital contribution of this research is new state-of-the-art (SOTA) results obtained using TransformerXL for predicting medical codes. A variety of experiments are performed on the Medical Information Mart for Intensive Care (MIMIC-III) database. Results show that concatenated BioMed-Transformers outperform standard transformers in terms of overall micro and macro F1 scores and individual F1 scores of tail-end labels, while incurring lower training times than existing transformer-based solutions for long input sequences.

cs.LG↗

arXiv2021

Predicting COVID-19 Patient Shielding: A Comprehensive Study

There are many ways machine learning and big data analytics are used in the fight against the COVID-19 pandemic, including predictions, risk management, diagnostics, and prevention. This study focuses on predicting COVID-19 patient shielding -- identifying and protecting patients who are clinically extremely vulnerable from coronavirus. This study focuses on techniques used for the multi-label classification of medical text. Using the information published by the United Kingdom NHS and the World Health Organisation, we present a novel approach to predicting COVID-19 patient shielding as a multi-label classification problem. We use publicly available, de-identified ICU medical text data for our experiments. The labels are derived from the published COVID-19 patient shielding data. We present an extensive comparison across 12 multi-label classifiers from the simple binary relevance to neural networks and the most recent transformers. To the best of our knowledge this is the first comprehensive study, where such a range of multi-label classifiers for medical text are considered. We highlight the benefits of various approaches, and argue that, for the task at hand, both predictive accuracy and processing time are essential.

cs.LG↗

arXiv2021

Better Self-training for Image Classification through Self-supervision

Self-training is a simple semi-supervised learning approach: Unlabelled examples that attract high-confidence predictions are labelled with their predictions and added to the training set, with this process being repeated multiple times. Recently, self-supervision -- learning without manual supervision by solving an automatically-generated pretext task -- has gained prominence in deep learning. This paper investigates three different ways of incorporating self-supervision into self-training to improve accuracy in image classification: self-supervision as pretraining only, self-supervision performed exclusively in the first iteration of self-training, and self-supervision added to every iteration of self-training. Empirical results on the SVHN, CIFAR-10, and PlantVillage datasets, using both training from scratch, and Imagenet-pretrained weights, show that applying self-supervision only in the first iteration of self-training can greatly improve accuracy, for a modest increase in computation time.

cs.CV↗

arXiv2021

Semi-Supervised Learning using Siamese Networks

Neural networks have been successfully used as classification models yielding state-of-the-art results when trained on a large number of labeled samples. These models, however, are more difficult to train successfully for semi-supervised problems where small amounts of labeled instances are available along with a large number of unlabeled instances. This work explores a new training method for semi-supervised learning that is based on similarity function learning using a Siamese network to obtain a suitable embedding. The learned representations are discriminative in Euclidean space, and hence can be used for labeling unlabeled instances using a nearest-neighbor classifier. Confident predictions of unlabeled instances are used as true labels for retraining the Siamese network on the expanded training set. This process is applied iteratively. We perform an empirical study of this iterative self-training algorithm. For improving unlabeled predictions, local learning with global consistency [22] is also evaluated.

cs.LG↗

arXiv2021

Transfer of Pretrained Model Weights Substantially Improves Semi-Supervised Image Classification

Deep neural networks produce state-of-the-art results when trained on a large number of labeled examples but tend to overfit when small amounts of labeled examples are used for training. Creating a large number of labeled examples requires considerable resources, time, and effort. If labeling new data is not feasible, so-called semi-supervised learning can achieve better generalisation than purely supervised learning by employing unlabeled instances as well as labeled ones. The work presented in this paper is motivated by the observation that transfer learning provides the opportunity to potentially further improve performance by exploiting models pretrained on a similar domain. More specifically, we explore the use of transfer learning when performing semi-supervised learning using self-learning. The main contribution is an empirical evaluation of transfer learning using different combinations of similarity metric learning methods and label propagation algorithms in semi-supervised learning. We find that transfer learning always substantially improves the model's accuracy when few labeled examples are available, regardless of the type of loss used for training the neural network. This finding is obtained by performing extensive experiments on the SVHN, CIFAR10, and Plant Village image classification datasets and applying pretrained weights from Imagenet for transfer learning.

cs.CV↗

arXiv2021

PolyLM: Learning about Polysemy through Language Modeling

To avoid the "meaning conflation deficiency" of word embeddings, a number of models have aimed to embed individual word senses. These methods at one time performed well on tasks such as word sense induction (WSI), but they have since been overtaken by task-specific techniques which exploit contextualized embeddings. However, sense embeddings and contextualization need not be mutually exclusive. We introduce PolyLM, a method which formulates the task of learning sense embeddings as a language modeling problem, allowing contextualization techniques to be applied. PolyLM is based on two underlying assumptions about word senses: firstly, that the probability of a word occurring in a given context is equal to the sum of the probabilities of its individual senses occurring; and secondly, that for a given occurrence of a word, one of its senses tends to be much more plausible in the context than the others. We evaluate PolyLM on WSI, showing that it performs considerably better than previous sense embedding techniques, and matches the current state-of-the-art specialized WSI method despite having six times fewer parameters. Code and pre-trained models are available at https://github.com/AlanAnsell/PolyLM.

cs.CL↗

arXiv2020

Regularisation of Neural Networks by Enforcing Lipschitz Continuity

We investigate the effect of explicitly enforcing the Lipschitz continuity of neural networks with respect to their inputs. To this end, we provide a simple technique for computing an upper bound to the Lipschitz constant---for multiple $p$-norms---of a feed forward neural network composed of commonly used layer types. Our technique is then used to formulate training a neural network with a bounded Lipschitz constant as a constrained optimisation problem that can be solved using projected stochastic gradient methods. Our evaluation study shows that the performance of the resulting models exceeds that of models trained with other common regularisers. We also provide evidence that the hyperparameters are intuitive to tune, demonstrate how the choice of norm for computing the Lipschitz constant impacts the resulting model, and show that the performance gains provided by our method are particularly noticeable when only a small amount of training data is available.

stat.ML↗

arXiv2020

Adaptive XGBoost for Evolving Data Streams

Boosting is an ensemble method that combines base models in a sequential manner to achieve high predictive accuracy. A popular learning algorithm based on this ensemble method is eXtreme Gradient Boosting (XGB). We present an adaptation of XGB for classification of evolving data streams. In this setting, new data arrives over time and the relationship between the class and the features may change in the process, thus exhibiting concept drift. The proposed method creates new members of the ensemble from mini-batches of data as new data becomes available. The maximum ensemble size is fixed, but learning does not stop when this size is reached because the ensemble is updated on new data to ensure consistency with the current concept. We also explore the use of concept drift detection to trigger a mechanism to update the ensemble. We test our method on real and synthetic data with concept drift and compare it against batch-incremental and instance-incremental classification methods for data streams.

cs.LG↗

arXiv2020

Classifier Chains: A Review and Perspectives

The family of methods collectively known as classifier chains has become a popular approach to multi-label learning problems. This approach involves linking together off-the-shelf binary classifiers in a chain structure, such that class label predictions become features for other classifiers. Such methods have proved flexible and effective and have obtained state-of-the-art empirical performance across many datasets and multi-label evaluation metrics. This performance led to further studies of how exactly it works, and how it could be improved, and in the recent decade numerous studies have explored classifier chains mechanisms on a theoretical level, and many improvements have been made to the training and inference procedures, such that this method remains among the state-of-the-art options for multi-label learning. Given this past and ongoing interest, which covers a broad range of applications and research themes, the goal of this work is to provide a review of classifier chains, a survey of the techniques and extensions provided in the literature, as well as perspectives for this approach in the domain of multi-label classification in the future. We conclude positively, with a number of recommendations for researchers and practitioners, as well as outlining a number of areas for future research.

cs.LG↗

arXiv2020

Seeing The Whole Patient: Using Multi-Label Medical Text Classification Techniques to Enhance Predictions of Medical Codes

Machine learning-based multi-label medical text classifications can be used to enhance the understanding of the human body and aid the need for patient care. We present a broad study on clinical natural language processing techniques to maximise a feature representing text when predicting medical codes on patients with multi-morbidity. We present results of multi-label medical text classification problems with 18, 50 and 155 labels. We compare several variations to embeddings, text tagging, and pre-processing. For imbalanced data we show that labels which occur infrequently, benefit the most from additional features incorporated in embeddings. We also show that high dimensional embeddings pre-trained using health-related data present a significant improvement in a multi-label setting, similarly to the way they improve performance for binary classification. High dimensional embeddings from this research are made available for public use.

cs.IR↗

arXiv2019

Stochastic Gradient Trees

We present an algorithm for learning decision trees using stochastic gradient information as the source of supervision. In contrast to previous approaches to gradient-based tree learning, our method operates in the incremental learning setting rather than the batch learning setting, and does not make use of soft splits or require the construction of a new tree for every update. We demonstrate how one can apply these decision trees to different problems by changing only the loss function, using classification, regression, and multi-instance learning as example applications. In the experimental evaluation, our method performs similarly to standard incremental classification trees, outperforms state of the art incremental regression trees, and achieves comparable performance with batch multi-instance learning methods.

stat.ML↗

arXiv2019

Automatic end-to-end De-identification: Is high accuracy the only metric?

De-identification of electronic health records (EHR) is a vital step towards advancing health informatics research and maximising the use of available data. It is a two-step process where step one is the identification of protected health information (PHI), and step two is replacing such PHI with surrogates. Despite the recent advances in automatic de-identification of EHR, significant obstacles remain if the abundant health data available are to be used to the full potential. Accuracy in de-identification could be considered a necessary, but not sufficient condition for the use of EHR without individual patient consent. We present here a comprehensive review of the progress to date, both the impressive successes in achieving high accuracy and the significant risks and challenges that remain. To best of our knowledge, this is the first paper to present a complete picture of end-to-end automatic de-identification. We review 18 recently published automatic de-identification systems -designed to de-identify EHR in the form of free text- to show the advancements made in improving the overall accuracy of the system, and in identifying individual PHI. We argue that despite the improvements in accuracy there remain challenges in surrogate generation and replacements of identified PHIs, and the risks posed to patient protection and privacy.

cs.CY↗

arXiv2018

A survey of automatic de-identification of longitudinal clinical narratives

Use of medical data, also known as electronic health records, in research helps develop and advance medical science. However, protecting patient confidentiality and identity while using medical data for analysis is crucial. Medical data can be in the form of tabular structures (i.e. tables), free-form narratives, and images. This study focuses on medical data in the free form longitudinal text. De-identification of electronic health records provides the opportunity to use such data for research without it affecting patient privacy, and avoids the need for individual patient consent. In recent years there is increasing interest in developing an accurate, robust and adaptable automatic de-identification system for electronic health records. This is mainly due to the dilemma between the availability of an abundance of health data, and the inability to use such data in research due to legal and ethical restrictions. De-identification tracks in competitions such as the 2014 i2b2 UTHealth and the 2016 CEGS N-GRID shared tasks have provided a great platform to advance this area. The primary reasons for this include the open source nature of the dataset and the fact that raw psychiatric data were used for 2016 competitions. This study focuses on noticeable trend changes in the techniques used in the development of automatic de-identification for longitudinal clinical narratives. More specifically, the shift from using conditional random fields (CRF) based systems only or rules (regular expressions, dictionary or combinations) based systems only, to hybrid models (combining CRF and rules), and more recently to deep learning based systems. We review the literature and results that arose from the 2014 and the 2016 competitions and discuss the outcomes of these systems. We also provide a list of research questions that emerged from this survey.

cs.AI↗

arXiv2018

On the Calibration of Nested Dichotomies for Large Multiclass Tasks

Nested dichotomies are used as a method of transforming a multiclass classification problem into a series of binary problems. A tree structure is induced that recursively splits the set of classes into subsets, and a binary classification model learns to discriminate between the two subsets of classes at each node. In this paper, we demonstrate that these nested dichotomies typically exhibit poor probability calibration, even when the base binary models are well calibrated. We also show that this problem is exacerbated when the binary models are poorly calibrated. We discuss the effectiveness of different calibration strategies and show that accuracy and log-loss can be significantly improved by calibrating both the internal base models and the full nested dichotomy structure, especially when the number of classes is high.

cs.LG↗

arXiv2018

Probability Calibration Trees

Obtaining accurate and well calibrated probability estimates from classifiers is useful in many applications, for example, when minimising the expected cost of classifications. Existing methods of calibrating probability estimates are applied globally, ignoring the potential for improvements by applying a more fine-grained model. We propose probability calibration trees, a modification of logistic model trees that identifies regions of the input space in which different probability calibration models are learned to improve performance. We compare probability calibration trees to two widely used calibration methods---isotonic regression and Platt scaling---and show that our method results in lower root mean squared error on average than both methods, for estimates produced by a variety of base learners.

cs.LG↗