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Beth A. Lindquist

Publications and source records attributed to Beth A. Lindquist.

16 recordsLinked to original sources

A Tutorial on Bayesian Analysis of Linear Shock Compression Data

Gas gun and other shock compression experiments often produce shock wave velocity measurements that are linearly associated with particle velocity. Traditionally, this empirical relationship is quantified with a single Hugoniot curve that is estimated using least squares regression. However, for downstream modeling and simulation tasks, it is often more useful to have multiple Hugoniot curves in the pressure-volume plane that are consistent with the data. We employ Bayesian uncertainty quantification methods as a framework for propagating measurement uncertainty through to model parameters and predictions. Specifically, this tutorial shows how to sample multiple Hugoniot curves in the pressure-volume plane that are consistent with the shock wave-particle velocity measurements in a two-step Bayesian approach. First, we obtain an analytical expression for the posterior distribution of the linear model parameters using Bayesian linear regression. Second, we propagate samples from the posterior distribution through the Rankine-Hugoniot equations to yield Hugoniot curves in the pressure-volume plane. The procedure is demonstrated with publicly available data on argon, copper, and nickel, and compared against bootstrapping and linear regression. The Bayesian procedure is shown to be interpretable, computationally inexpensive, and less sensitive than an alternative bootstrapping approach to the removal of the point in the copper dataset that has the largest particle velocity. As a tutorial on Bayesian methodology for the shock compression community, we provide several derivations and explanations that make this paper self-contained, and made all code and data available at https://github.com/llnl/BALSCD.

stat.AP

Treating random sequential addition via the replica method

While many physical processes are non-equilibrium in nature, the theory and modeling of such phenomena lag behind theoretical treatments of equilibrium systems. The diversity of powerful theoretical tools available to describe equilibrium systems has inspired strategies that map non-equilibrium systems onto equivalent equilibrium analogs so that interrogation with standard statistical mechanical approaches is possible. In this work, we revisit the mapping from the non-equilibrium random sequential addition process onto an equilibrium multi-component mixture via the replica method, allowing for theoretical predictions of non-equilibrium structural quantities. We validate the above approach by comparing the theoretical predictions to numerical simulations of random sequential addition.

cond-mat.stat-mech

Inverse methods for design of soft materials

Functional soft materials, comprising colloidal and molecular building blocks that self-organize into complex structures as a result of their tunable interactions, enable a wide array of technological applications. Inverse methods provide systematic means for navigating their inherently high-dimensional design spaces to create materials with targeted properties. While multiple physically motivated inverse strategies have been successfully implemented in silico, their translation to guiding experimental materials discovery has thus far been limited to a handful of proof-of-concept studies. In this Perspective, we discuss recent advances in inverse methods for design of soft materials that address two challenges: (1) methodological limitations that prevent such approaches from satisfying design constraints and (2) computational challenges that limit the size and complexity of systems that can be addressed. Strategies that leverage machine learning have proven particularly effective, including methods to discover order parameters that characterize complex structural motifs and schemes to efficiently compute macroscopic properties from the underlying structure. We also highlight promising opportunities to improve the experimental realizability of materials designed computationally, including discovery of materials with functionality at multiple thermodynamic states, design of externally directed assembly protocols that are simple to implement in experiments, and strategies to improve the accuracy and computational efficiency of experimentally relevant models.

cond-mat.soft

Structure and phase behavior of polymer-linked colloidal gels

Low-density "equilibrium" gels that consist of a percolated, kinetically arrested network of colloidal particles and are resilient to aging can be fabricated by restricting the number of effective bonds that form between the colloids. Valence-restricted patchy particles have long served as one archetypal example of such materials, but equilibrium gels can also be realized through a synthetically simpler and scalable strategy that introduces a secondary linker, such as a small ditopic molecule, to mediate the bonds between the colloids. Here, we consider the case where the ditopic linker molecules are low-molecular-weight polymers and demonstrate using a model colloid-polymer mixture how macroscopic properties such as the phase behavior as well as the microstructure of the gel can be designed through the polymer molecular weight and concentration. The low-density window for equilibrium gel formation is favorably expanded using longer linkers, while necessarily increasing the spacing between all colloids. However, we show that blends of linkers with different sizes enable wider variation in microstructure for a given target phase behavior. Our computational study suggests a robust and tunable strategy for the experimental realization of equilibrium colloidal gels.

cond-mat.soft

The Role of Pressure in Inverse Design for Assembly

Isotropic pairwise interactions that promote the self assembly of complex particle morphologies have been discovered by inverse design strategies derived from the molecular coarse-graining literature. While such approaches provide an avenue to reproduce structural correlations, thermodynamic quantities such as the pressure have typically not been considered in self-assembly applications. In this work, we demonstrate that relative entropy optimization can be used to discover potentials that self-assemble into targeted cluster morphologies with a prescribed pressure when the iterative simulations are performed in the isothermal-isobaric ensemble. By tuning the pressure in the optimization, we generate a family of simple pair potentials that all self-assemble the same structure. Selecting an appropriate simulation ensemble to control the thermodynamic properties of interest is a general design strategy that could also be used to discover interaction potentials that self-assemble structures having, for example, a specified chemical potential.

cond-mat.stat-mech

Assembly of particle strings via isotropic potentials

Assembly of spherical colloidal particles into extended structures, including linear strings, in the absence of directional interparticle bonding interactions or external perturbation could facilitate the design of new functional materials. Here, we use methods of inverse design to discover isotropic pair potentials that promote the formation of single-stranded, polydisperse strings of colloids "colloidomers" as well as size-specific, compact colloidal clusters. Based on the designed potentials, a simple model pair interaction with a short-range attraction and a longer-range repulsion is proposed which stabilizes a variety of different particle morphologies including (i) dispersed fluid of monomers, (ii) ergodic short particle chains as well as porous networks of percolated strings, (iii) compact clusters, and (iv) thick cylindrical structures including trihelical Bernal spirals.

cond-mat.soft

From Close-Packed to Topologically Close-Packed: Formation of Laves Phases in Moderately Polydisperse Hard-Sphere Mixtures

Particle size polydispersity can help to inhibit crystallization of the hard-sphere fluid into close-packed structures at high packing fractions and thus is often employed to create model glass-forming systems. Nonetheless, it is known that hard-sphere mixtures with modest polydispersity still have ordered ground states. Here, we demonstrate by computer simulation that hard-sphere mixtures with increased polydispersity fractionate on the basis of particle size, and a bimodal subpopulation favors formation of topologically close-packed C14 and C15 Laves phases in coexistence with a disordered phase. The generality of this result is supported by simulations of hard-sphere mixtures with particle-size distributions of four different forms.

cond-mat.soft

Gelation of Plasmonic Metal Oxide Nanocrystals by Polymer-Induced Depletion-Attractions

Gelation of colloidal nanocrystals (NCs) emerged as a strategy to preserve inherent nanoscale properties in multiscale architectures. Yet available gelation methods still struggle to reliably control nanoscale optical phenomena such as photoluminescence and localized surface plasmon resonance (LSPR) across NC systems due to processing variability. Here, we report on an alternative gelation method based on physical inter-NC interactions: short-range depletion-attractions balanced by long-range electrostatic repulsions. The latter are established by removing the native organic ligands that passivate tin-doped indium oxide (ITO) NCs while the former are introduced by mixing with small polyethylene glycol (PEG) chains. As we incorporate increasing concentrations of PEG, we observe a reentrant phase behavior featuring two favorable gelation windows; the first arises from bridging effects while the second is attributed to depletion-attractions according to phase behavior predicted by our unified theoretical model. The NCs remain discrete within the gel network, based on X-ray scattering and high-resolution transmission electron microscopy. The infrared optical response of the gel is reflective of both the NC building blocks and the network architecture, being characteristic of ITO NC LSPR with coupling interactions between neighboring NCs.

cond-mat.mes-hall

Inverse Design of Multicomponent Assemblies

Inverse design can be a useful strategy for discovering interactions that drive particles to spontaneously self-assemble into a desired structure. Here, we extend an inverse design methodology--relative entropy optimization--to determine isotropic interactions that promote assembly of targeted multicomponent phases, and we apply this extension to design interactions for a variety of binary crystals ranging from compact triangular and square architectures to highly open structures with dodecagonal and octadecagonal motifs. We compare the resulting optimized (self and cross) interactions for the binary assemblies to those obtained from optimization of analogous single-component systems. This comparison reveals that self interactions act as a `primer' to position particles at approximately correct coordination shell distances, while cross interactions act as the `binder' that refines and locks the system into the desired configuration. For simpler binary targets, it is possible to successfully design self-assembling systems while restricting one of these interaction types to be a hard-core-like. However, optimization of both self and cross interaction types appears necessary to design for assembly of more complex or open structures.

cond-mat.soft

Recent advances in accelerated discovery through machine learning and statistical inference

Recent applications of machine learning and statistical inference provide case studies demonstrating how such approaches can accelerate the discovery process in physical chemistry and related fields. Examples discussed in this review include the introduction of automated approaches to systematically improve experimental design, increase the efficiency of computationally expensive molecular simulations, facilitate construction of predictive models for complex biological processes, and discover interparticle potentials that lead to materials which meet specified design goals. A common theme is the synergy between experiment and computation enabled by such approaches.

physics.chem-ph

Interactions and design rules for assembly of porous colloidal mesophases

Porous mesophases, where well-defined particle-depleted 'void' spaces are present within a particle-rich background fluid, can be self-assembled from colloidal particles interacting via isotropic pair interactions with competing attractions and repulsions. While such structures could be of wide interest for technological applications (e.g., filtration, catalysis, absorption, etc.), relatively few studies have investigated the interactions that lead to these morphologies and how they compare to those that produce other micro-phase-separated structures, such as clusters. In this work, we use inverse methods of statistical mechanics to design model isotropic pair potentials that form porous mesophases. We characterize the resulting porous structures, correlating features of the pair potential with the targeted pore size and the particle packing fraction. The former is primarily encoded by the amplitude and range of the repulsive barrier of the designed pair potential and the latter by the attractive well depth. We observe a trade-off with respect to the packing fraction of the targeted morphology: greater values support more spherical and monodisperse pores that themselves organize into periodic structures, while lower values yield more mobile pores that do not assemble into ordered structures but remain stable over a larger range of packing fraction. We conclude by commenting on the limitations of targeting a specific pore diameter within the present inverse design approach as well as by describing future directions to overcome these limitations.

cond-mat.soft

Inverse Design for Self Assembly via On-the-Fly Optimization

Inverse methods of statistical mechanics have facilitated the discovery of pair potentials that stabilize a wide variety of targeted lattices at zero temperature. However, such methods are complicated by the need to compare, within the optimization framework, the energy of the desired lattice to all possibly relevant competing structures, which are not generally known in advance. Furthermore, ground-state stability does not guarantee that the target will readily assemble from the fluid upon cooling from higher temperature. Here, we introduce a molecular dynamics simulation-based, optimization design strategy that iteratively and systematically refines the pair interaction according to the fluid and crystalline structural ensembles encountered during the assembly process. We successfully apply this probabilistic, machine-learning approach to the design of repulsive, isotropic pair potentials that assemble into honeycomb, kagome, square, rectangular, truncated square and truncated hexagonal lattices.

cond-mat.stat-mech

On the Formation of Equilibrium Gels via a Macroscopic Bond Limitation

Restricting the number of attractive physical "bonds" that can form between particles in a fluid suppresses the usual demixing phase transition to very low particle concentrations, allowing for the formation of open, percolated, and homogeneous states, aptly called equilibrium or "empty" gels. Most demonstrations of this concept have directly limited the microscopic particle valence via anisotropic (patchy) attractions; however, an alternative macroscopic valence limitation would be desirable for greater experimental tunability and responsiveness. One possibility, explored in this paper, is to employ primary particles with attractions mediated via a secondary species of linking particles. In such a system, the linker-to-primary particle ratio serves as a macroscopic control parameter for the average microscopic valence. We show that the phase behavior of such a system predicted by Wertheim's first order perturbation theory is consistent with equilibrium gel formation: the primary particle concentrations corresponding to the two-phase demixing transition are significantly suppressed at both low and high linker-to-primary particle ratios. Extensive molecular dynamics simulations validate these theoretical predictions but also reveal the presence of loops of bonded particles, which are neglected in the theory. Such loops cause densification and inhibit percolation, and hence the range of viable empty gel state conditions is somewhat reduced relative to the Wertheim theory predictions.

cond-mat.soft

Consequences of minimizing pair correlations in fluids for dynamics, thermodynamics, and structure

Liquid-state theory, computer simulation, and numerical optimization are used to investigate the extent to which positional correlations of a hard-sphere fluid--as characterized by the radial distribution function and the two-particle excess entropy--can be suppressed via the introduction of auxiliary pair interactions. The corresponding effects of such interactions on total excess entropy, density fluctuations, and single-particle dynamics are explored. Iso-g processes, whereby hard-sphere-fluid pair structure at a given density is preserved at higher densities via the introduction of a density-dependent, soft repulsive contribution to the pair potential, are considered. Such processes eventually terminate at a singular density, resulting in a state that--while incompressible and hyperuniform--remains unjammed and exhibits fluid-like dynamic properties. The extent to which static pair correlations can be suppressed to maximize pair disorder in a fluid with hard cores, determined via direct functional maximization of two-body excess entropy, is also considered. Systems approaching a state of maximized two-body entropy display a progressively growing bandwidth of suppressed density fluctuations, pointing to a relation between "stealthiness" and maximal pair disorder in materials.

cond-mat.soft

Assembly of nothing: Equilibrium fluids with designed structured porosity

Controlled micro- to meso-scale porosity is a common materials design goal with possible applications ranging from molecular gas adsorption to particle size selective permeability or solubility. Here, we use inverse methods of statistical mechanics to design an isotropic pair interaction that, in the absence of an external field, assembles particles into an inhomogeneous {\em fluid} matrix surrounding pores of prescribed size ordered in a lattice morphology. The pore size can be tuned via modification of temperature or particle concentration. Moreover, modulating density reveals a rich series of microphase-separated morphologies including pore- or particle-based lattices, pore- or particle-based columns, and bicontinuous or lamellar structures. Sensitivity of pore assembly to the form of the designed interaction potential is explored.

cond-mat.soft

Equilibrium cluster fluids: Pair interactions via inverse design

Inverse methods of statistical mechanics are becoming productive tools in the design of materials with specific microstructures or properties. While initial studies have focused on solid-state design targets (e.g, assembly of colloidal superlattices), one can alternatively design fluid states with desired morphologies. This work addresses the latter and demonstrates how a simple iterative Boltzmann inversion strategy can be used to determine the isotropic pair potential that reproduces the radial distribution function of a fluid of amorphous clusters with prescribed size. The inverse designed pair potential of this "ideal" cluster fluid, with its broad attractive well and narrow repulsive barrier at larger separations, is qualitatively different from the so-called SALR form most commonly associated with equilibrium cluster formation in colloids, which features short-range attractive (SA) and long-range repulsive (LR) contributions. These differences reflect alternative mechanisms for promoting cluster formation with an isotropic pair potential, and they in turn produce structured fluids with qualitatively different static and dynamic properties. Specifically, equilibrium simulations show that the amorphous clusters resulting from the inverse designed potentials display more uniformity in size and shape, and they also show greater spatial and temporal resolution than those resulting from SALR interactions.

cond-mat.soft