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Bin Lu

Publications and source records attributed to Bin Lu.

At least 19 recordsLinked to original sources
arXiv2026

Coronary Mask Guided Registration for Continuous Time 4D Cardiac CT Dataset Construction

Objective: Clinical cardiac CT multiphase reconstructions generally provide acceptable image quality in end-diastole (ED) or end-systole (ES) phases, but in other phases may exhibit motion artifacts, especially in the right coronary artery (RCA). This limits ground-truth availability in 4D cardiac CT imaging research. We aim to construct a 4D cardiac CT dataset that is generally suitable to serve as pseudo ground truth. Methods: We propose Coronary Mask Guided Registration (CMGR) to produce a motion-preserved, artifact-reduced, and continuous-time 4D cardiac CT sequence from the clinical multiphase reconstruction of each patient. For artifact reduction, CMGR uses the ED or ES phase as the reference phase and warps the reference volume with deformation fields to produce the sequence. For motion preservation, CMGR registers the reference phase to each non-reference phase of the multiphase reconstruction. To capture the motion of both the RCA and other cardiac structures in each registration, CMGR regularizes RCA masks and incorporates them into image-domain registration. Time-continuity is achieved by interpolating the deformation fields for non-reference phases to arbitrary times. Results: CMGR outperformed representative image-domain registration methods in capturing RCA motion and providing reasonable RCA shape, and showed competitive performance in capturing whole-heart motion. Additionally, CMGR reduced motion artifacts from clinical multiphase reconstructions, and intermediate CMGR frames generally provided plausible transitions between discrete cardiac phases. Conclusion: CMGR provides an effective approach for constructing continuous-time 4D cardiac CT datasets. Significance: The dataset can be used in system design simulations and in reconstruction algorithm development, thereby facilitating advances in cardiac CT imaging.

eess.IV↗
arXiv2026

3D trapping of a meta-atom in an intensity minimum

High-refractive-index particles have recently attracted a growing interest in optical levitation experiments, offering the ability to further engineer optical forces through electromagnetic Mie resonances. Unlike standard silica particles, which are predominantly trapped in the dipole regime and exhibit trap frequencies mainly determined by material density, resonant meta-atoms formed by high-index particles enable qualitatively new trapping behaviors. In this work, we experimentally investigate the trapping of resonant silicon particles in an optical standing wave. A direct comparison of silicon and silica highlights the fundamental differences in their optical force scaling and trapping dynamics. Beyond conventional trapping at intensity-maxima, we demonstrate deterministic and stable three-dimensional trapping of silicon nanoparticles in optical intensity minima, a regime that remains inaccessible for silica particles. Drawing a mesoscopic analogy with blue-detuned atom trapping, our results establish meta-atoms as a versatile approach to further extend the optical manipulation tool box towards accessing novel trapping regimes e.g. in close proximity to a surface.

physics.optics↗
arXiv2026

Compass: Navigating Global Marine Lead Data Integration through Expert-Guided LLM Agent

Marine lead (Pb) and its isotopes are critical tracers for ocean circulation and anthropogenic pollution, yet in-situ observations remain costly and sparse. While vast historical records exist, they lie buried within the unstructured content of academic papers, creating "data silos" inaccessible to comprehensive analysis. Manual extraction is unscalable, while general-purpose Large Language Models (LLMs) lack the necessary domain-specific knowledge, leading to hallucinations and scientifically invalid outputs. To address this, we introduce an expert-guided adaptation approach that enables LLMs to perform rigorous scientific data extraction without fine-tuning. We operationalize this approach through Compass, an LLM agent framework enhanced by a Knowledge Tree co-designed with marine scientists, which decomposes complex tasks into verifiable steps, guiding the agent's reasoning to ensure scientific validity. Deploying Compass across a corpus of over 230,000 relevant open-access papers, we successfully extract 3,751 previously unincorporated Pb records. This effort establishes the largest integrated marine Pb database to date. Beyond standard metrics, Compass demonstrates superior reliability through multi-layered validation, achieving 92% accuracy as confirmed through expert manual verification. The newly integrated data expand coverage in previously under-sampled regions such as the East China Sea and the Southern Ocean, providing an enriched data foundation for future scientific discoveries. We release an interactive visualization platform to facilitate open scientific access. Our work demonstrates that expert-guided agents can effectively bridge the gap between general-purpose LLMs and high-stakes scientific domains, enabling scalable data discovery in geosciences.

cs.AI↗
arXiv2026

Rethinking Efficient Graph Coarsening via a Non-Selfishness Principle

Graph coarsening is a graph dimensionality reduction technique that aims to construct a smaller and more tractable graph while preserving the essential structural and semantic properties of the original graph. However, most existing methods rely on pair-wise similarity matching, where each node independently searches for its best partner based on global information. This selfishness matching paradigm incurs substantial computational and memory overhead. To address this problem, we shift to a non-selfishness principle that prioritizes the collective interference of neighborhood in coarsening, and propose an efficient method named NOPE, which achieves linear memory consumption and near-linear computational complexity in the number of nodes. Furthermore, we derive a faster variant NOPE*, which reduces O(\delta \dot d) interference evaluation to O(d) based on the local isotropy assumption, and consequently alleviates the computational bottleneck for high-degree nodes. Experimental results show that NOPE* achieves 1.8-10\times speedup over NOPE and surpass almost all baselines with 1-3 orders of magnitude acceleration. Meanwhile, learning on coarsened graphs yields comparable performance to original graphs, and can even show superior performance over LLM-based graph reasoning owing to compact graph information. The code can be available at https://github.com/dazonglian/NOPE-main.

cs.LG↗
arXiv2026

SLASH the Sink: Sharpening Structural Attention Inside LLMs

Large Language Models (LLMs) show remarkable semantic understanding but often struggle with structural understanding when processing graph topologies in a serialized format. Existing solutions rely on training external graph-based adapters or fine-tuning, which incur high costs and lost generalizability. In this work, we investigate the internal mechanisms of LLMs and present a critical finding: LLMs spontaneously reconstruct the graph's topology internally, evidenced by a distinct "sawtooth" pattern in their attention maps that structurally aligns with the "token-level adjacency matrix". However, this intrinsic structural understanding is diluted by the attention sink. We theoretically formalize this dilution as a representation bottleneck, stemming from a fundamental conflict: the model's anisotropic bias, essential for language tasks, suppresses the topology-aware local aggregation required for graph reasoning. To address this, we propose a training-free solution, named StructuraL Attention SHarpening (SLASH), which amplifies this internal structural understanding via a plug-and-play attention redistribution. Experiments on pure graph tasks and molecular prediction validate that SLASH delivers significant and consistent performance gains across diverse LLMs.

cs.AI↗
arXiv2026

Inductive Reasoning for Temporal Knowledge Graphs with Emerging Entities

Reasoning on Temporal Knowledge Graphs (TKGs) is essential for predicting future events and time-aware facts. While existing methods are effective at capturing relational dynamics, their performance is limited by a closed-world assumption, which fails to account for emerging entities not present in the training. Notably, these entities continuously join the network without historical interactions. Empirical study reveals that emerging entities are widespread in TKGs, comprising roughly 25\% of all entities. The absence of historical interactions of these entities leads to significant performance degradation in reasoning tasks. Whereas, we observe that entities with semantic similarities often exhibit comparable interaction histories, suggesting the presence of transferable temporal patterns. Inspired by this insight, we propose TransFIR (Transferable Inductive Reasoning), a novel framework that leverages historical interaction sequences from semantically similar known entities to support inductive reasoning. Specifically, we propose a codebook-based classifier that categorizes emerging entities into latent semantic clusters, allowing them to adopt reasoning patterns from similar entities. Experimental results demonstrate that TransFIR outperforms all baselines in reasoning on emerging entities, achieving an average improvement of 28.6% in Mean Reciprocal Rank (MRR) across multiple datasets. The implementations are available at https://github.com/zhaodazhuang2333/TransFIR.

cs.AI↗
arXiv2026

FuxiShuffle: An Adaptive and Resilient Shuffle Service for Distributed Data Processing on Alibaba Cloud

Shuffle exchanges intermediate results between upstream and downstream operators in distributed data processing and is usually the bottleneck due to factors such as small random I/Os and network contention. Several systems have been designed to improve shuffle efficiency, but from our experiences of running ultra-large clusters at Alibaba Cloud MaxCompute platform, we observe that they can not adapt to highly dynamic job characteristics and cluster resource conditions, and their fault tolerance mechanisms are passive and inefficient when failures are inevitable. To tackle their limitations, we design and implement FuxiShuffle as a general data shuffle service for the ultra-large production environment of MaxCompute, featuring good adaptability and efficient failure resilience. Specifically, to achieve good adaptability, FuxiShuffle dynamically selects the shuffle mode based on runtime information, conducts progress-aware scheduling for the downstream workers, and automatically determines the most suitable backup strategy for each shuffle data chunk. To make failure resilience efficient, FuxiShuffle actively ensures data availability with multi-replica failover, prevents memory overflow with careful memory management, and employs an incremental recovery mechanism that does not lose computation progress. Our experiments show that, compared to baseline systems, FuxiShuffle significantly reduces not only end-to-end job completion time but also aggregate resource consumption. Micro experiments suggest that our designs are effective in improving adaptability and failure resilience.

cs.DC↗
arXiv2026

: One LLM Token for Explicit Graph Structural Understanding

Large language models show great potential in unstructured data understanding, but still face significant challenges with graphs due to their structural hallucination. Existing approaches mainly either verbalize graphs into natural language, which leads to excessive token consumption and scattered attention, or transform graphs into trainable continuous embeddings (i.e., soft prompt), but exhibit severe misalignment with original text tokens. To solve this problem, we propose to incorporate one special token to fully represent the Structure Of Graph within a unified token space, facilitating explicit topology input and structural information sharing. Specifically, we propose a topology-aware structural tokenizer that maps each graph topology into a highly selective single token. Afterwards, we construct a set of hybrid structure Question-Answering corpora to align new structural tokens with existing text tokens. With this approach, empowers LLMs to understand, generate, and reason in a concise and accurate manner. Extensive experiments on five graph-level benchmarks demonstrate the superiority of our method, achieving a performance improvement of 9.9% to 41.4% compared to the baselines while exhibiting interpretability and consistency. Furthermore, our method provides a flexible extension to node-level tasks, enabling both global and local structural understanding. The codebase is publicly available at https://github.com/Jingyao-Wu/SOG.

cs.CL↗
arXiv2026

Improving LLM Reasoning with Homophily-aware Structural and Semantic Text-Attributed Graph Compression

Large language models (LLMs) have demonstrated promising capabilities in Text-Attributed Graph (TAG) understanding. Recent studies typically focus on verbalizing the graph structures via handcrafted prompts, feeding the target node and its neighborhood context into LLMs. However, constrained by the context window, existing methods mainly resort to random sampling, often implemented via dropping node/edge randomly, which inevitably introduces noise and cause reasoning instability. We argue that graphs inherently contain rich structural and semantic information, and that their effective exploitation can unlock potential gains in LLMs reasoning performance. To this end, we propose Homophily-aware Structural and Semantic Compression for LLMs (HS2C), a framework centered on exploiting graph homophily. Structurally, guided by the principle of Structural Entropy minimization, we perform a global hierarchical partition that decodes the graph's essential topology. This partition identifies naturally cohesive, homophilic communities, while discarding stochastic connectivity noise. Semantically, we deliver the detected structural homophily to the LLM, empowering it to perform differentiated semantic aggregation based on predefined community type. This process compresses redundant background contexts into concise community-level consensus, selectively preserving semantically homophilic information aligned with the target nodes. Extensive experiments on 10 node-level benchmarks across LLMs of varying sizes and families demonstrate that, by feeding LLMs with structurally and semantically compressed inputs, HS2C simultaneously enhances the compression rate and downstream inference accuracy, validating its superiority and scalability. Extensions to 7 diverse graph-level benchmarks further consolidate HS2C's task generalizability.

cs.AI↗
arXiv2025

Replacing Gas with Low-cost, Abundant Long-duration Pumped Hydro in Electricity Systems

Fossil gas is sometimes presented as an enabler of variable solar and wind generation beyond 2050, despite being a primary source of greenhouse gas emissions from methane leakage and combustion. We find that balancing solar and wind generation with pumped hydro energy storage eliminates the need for fossil gas without incurring a cost penalty. However, many existing long-term electricity system plans are biased to rely on fossil gas due to using temporal aggregation methods that either heavily constrain storage cycling behaviour or lose track of the state-of-charge, failing to consider the potential of low-cost long-duration off-river pumped hydro, and ignoring the broad suite of near-optimal energy transition pathways. We show that a temporal aggregation method based on 'segmentation' (fitted chronology) closely resembles the full-series optimisation, captures long-duration storage behaviour (48- and 160-hour durations), and finds a near-optimal 100% renewable electricity solution. We develop a new electricity system model to rapidly evaluate millions of other near-optimal solutions, stressing the importance of modelling pumped hydro sites with a low energy volume cost (<US$50 per kilowatt-hour), long economic lifetime (~75 years), and low real discount rate akin to other natural monopolies (<=3%). Almost every region of the world has access to sufficient 50 - 5000 gigawatt-hour off-river pumped hydro options that enable them to entirely decarbonise their future electricity systems.

cs.CE↗
arXiv2025

Time Matters: Enhancing Sequential Recommendations with Time-Guided Graph Neural ODEs

Sequential recommendation (SR) is widely deployed in e-commerce platforms, streaming services, etc., revealing significant potential to enhance user experience. However, existing methods often overlook two critical factors: irregular user interests between interactions and highly uneven item distributions over time. The former factor implies that actual user preferences are not always continuous, and long-term historical interactions may not be relevant to current purchasing behavior. Therefore, relying only on these historical interactions for recommendations may result in a lack of user interest at the target time. The latter factor, characterized by peaks and valleys in interaction frequency, may result from seasonal trends, special events, or promotions. These externally driven distributions may not align with individual user interests, leading to inaccurate recommendations. To address these deficiencies, we propose TGODE to both enhance and capture the long-term historical interactions. Specifically, we first construct a user time graph and item evolution graph, which utilize user personalized preferences and global item distribution information, respectively. To tackle the temporal sparsity caused by irregular user interactions, we design a time-guided diffusion generator to automatically obtain an augmented time-aware user graph. Additionally, we devise a user interest truncation factor to efficiently identify sparse time intervals and achieve balanced preference inference. After that, the augmented user graph and item graph are fed into a generalized graph neural ordinary differential equation (ODE) to align with the evolution of user preferences and item distributions. This allows two patterns of information evolution to be matched over time. Experimental results demonstrate that TGODE outperforms baseline methods across five datasets, with improvements ranging from 10% to 46%.

cs.IR↗
arXiv2025

RayFusion: Ray Fusion Enhanced Collaborative Visual Perception

Collaborative visual perception methods have gained widespread attention in the autonomous driving community in recent years due to their ability to address sensor limitation problems. However, the absence of explicit depth information often makes it difficult for camera-based perception systems, e.g., 3D object detection, to generate accurate predictions. To alleviate the ambiguity in depth estimation, we propose RayFusion, a ray-based fusion method for collaborative visual perception. Using ray occupancy information from collaborators, RayFusion reduces redundancy and false positive predictions along camera rays, enhancing the detection performance of purely camera-based collaborative perception systems. Comprehensive experiments show that our method consistently outperforms existing state-of-the-art models, substantially advancing the performance of collaborative visual perception. The code is available at https://github.com/wangsh0111/RayFusion.

cs.CV↗
arXiv2025

CHAINSFORMER: Numerical Reasoning on Knowledge Graphs from a Chain Perspective

Reasoning over Knowledge Graphs (KGs) plays a pivotal role in knowledge graph completion or question answering systems, providing richer and more accurate triples and attributes. As numerical attributes become increasingly essential in characterizing entities and relations in KGs, the ability to reason over these attributes has gained significant importance. Existing graph-based methods such as Graph Neural Networks (GNNs) and Knowledge Graph Embeddings (KGEs), primarily focus on aggregating homogeneous local neighbors and implicitly embedding diverse triples. However, these approaches often fail to fully leverage the potential of logical paths within the graph, limiting their effectiveness in exploiting the reasoning process. To address these limitations, we propose ChainsFormer, a novel chain-based framework designed to support numerical reasoning. Chainsformer not only explicitly constructs logical chains but also expands the reasoning depth to multiple hops. Specially, we introduces Relation-Attribute Chains (RA-Chains), a specialized logic chain, to model sequential reasoning patterns. ChainsFormer captures the step-by-step nature of multi-hop reasoning along RA-Chains by employing sequential in-context learning. To mitigate the impact of noisy chains, we propose a hyperbolic affinity scoring mechanism that selects relevant logic chains in a variable-resolution space. Furthermore, ChainsFormer incorporates an attention-based numerical reasoner to identify critical reasoning paths, enhancing both reasoning accuracy and transparency. Experimental results demonstrate that ChainsFormer significantly outperforms state-of-the-art methods, achieving up to a 20.0% improvement in performance. The implementations are available at https://github.com/zhaodazhuang2333/ChainsFormer.

cs.AI↗
arXiv2024

AutoFAIR : Automatic Data FAIRification via Machine Reading

The explosive growth of data fuels data-driven research, facilitating progress across diverse domains. The FAIR principles emerge as a guiding standard, aiming to enhance the findability, accessibility, interoperability, and reusability of data. However, current efforts primarily focus on manual data FAIRification, which can only handle targeted data and lack efficiency. To address this issue, we propose AutoFAIR, an architecture designed to enhance data FAIRness automately. Firstly, We align each data and metadata operation with specific FAIR indicators to guide machine-executable actions. Then, We utilize Web Reader to automatically extract metadata based on language models, even in the absence of structured data webpage schemas. Subsequently, FAIR Alignment is employed to make metadata comply with FAIR principles by ontology guidance and semantic matching. Finally, by applying AutoFAIR to various data, especially in the field of mountain hazards, we observe significant improvements in findability, accessibility, interoperability, and reusability of data. The FAIRness scores before and after applying AutoFAIR indicate enhanced data value.

cs.CL↗
arXiv2024

MagiNet: Mask-Aware Graph Imputation Network for Incomplete Traffic Data

Due to detector malfunctions and communication failures, missing data is ubiquitous during the collection of traffic data. Therefore, it is of vital importance to impute the missing values to facilitate data analysis and decision-making for Intelligent Transportation System (ITS). However, existing imputation methods generally perform zero pre-filling techniques to initialize missing values, introducing inevitable noises. Moreover, we observe prevalent over-smoothing interpolations, falling short in revealing the intrinsic spatio-temporal correlations of incomplete traffic data. To this end, we propose Mask-Aware Graph imputation Network: MagiNet. Our method designs an adaptive mask spatio-temporal encoder to learn the latent representations of incomplete data, eliminating the reliance on pre-filling missing values. Furthermore, we devise a spatio-temporal decoder that stacks multiple blocks to capture the inherent spatial and temporal dependencies within incomplete traffic data, alleviating over-smoothing imputation. Extensive experiments demonstrate that our method outperforms state-of-the-art imputation methods on five real-world traffic datasets, yielding an average improvement of 4.31% in RMSE and 3.72% in MAPE.

cs.LG↗
arXiv2024

OXYGENERATOR: Reconstructing Global Ocean Deoxygenation Over a Century with Deep Learning

Accurately reconstructing the global ocean deoxygenation over a century is crucial for assessing and protecting marine ecosystem. Existing expert-dominated numerical simulations fail to catch up with the dynamic variation caused by global warming and human activities. Besides, due to the high-cost data collection, the historical observations are severely sparse, leading to big challenge for precise reconstruction. In this work, we propose OxyGenerator, the first deep learning based model, to reconstruct the global ocean deoxygenation from 1920 to 2023. Specifically, to address the heterogeneity across large temporal and spatial scales, we propose zoning-varying graph message-passing to capture the complex oceanographic correlations between missing values and sparse observations. Additionally, to further calibrate the uncertainty, we incorporate inductive bias from dissolved oxygen (DO) variations and chemical effects. Compared with in-situ DO observations, OxyGenerator significantly outperforms CMIP6 numerical simulations, reducing MAPE by 38.77%, demonstrating a promising potential to understand the "breathless ocean" in data-driven manner.

cs.LG↗
arXiv2024

AceMap: Knowledge Discovery through Academic Graph

The exponential growth of scientific literature requires effective management and extraction of valuable insights. While existing scientific search engines excel at delivering search results based on relational databases, they often neglect the analysis of collaborations between scientific entities and the evolution of ideas, as well as the in-depth analysis of content within scientific publications. The representation of heterogeneous graphs and the effective measurement, analysis, and mining of such graphs pose significant challenges. To address these challenges, we present AceMap, an academic system designed for knowledge discovery through academic graph. We present advanced database construction techniques to build the comprehensive AceMap database with large-scale academic entities that contain rich visual, textual, and numerical information. AceMap also employs innovative visualization, quantification, and analysis methods to explore associations and logical relationships among academic entities. AceMap introduces large-scale academic network visualization techniques centered on nebular graphs, providing a comprehensive view of academic networks from multiple perspectives. In addition, AceMap proposes a unified metric based on structural entropy to quantitatively measure the knowledge content of different academic entities. Moreover, AceMap provides advanced analysis capabilities, including tracing the evolution of academic ideas through citation relationships and concept co-occurrence, and generating concise summaries informed by this evolutionary process. In addition, AceMap uses machine reading methods to generate potential new ideas at the intersection of different fields. Exploring the integration of large language models and knowledge graphs is a promising direction for future research in idea evolution. Please visit \url{https://www.acemap.info} for further exploration.

cs.DL↗
arXiv2024

Temporal Generalization Estimation in Evolving Graphs

Graph Neural Networks (GNNs) are widely deployed in vast fields, but they often struggle to maintain accurate representations as graphs evolve. We theoretically establish a lower bound, proving that under mild conditions, representation distortion inevitably occurs over time. To estimate the temporal distortion without human annotation after deployment, one naive approach is to pre-train a recurrent model (e.g., RNN) before deployment and use this model afterwards, but the estimation is far from satisfactory. In this paper, we analyze the representation distortion from an information theory perspective, and attribute it primarily to inaccurate feature extraction during evolution. Consequently, we introduce Smart, a straightforward and effective baseline enhanced by an adaptive feature extractor through self-supervised graph reconstruction. In synthetic random graphs, we further refine the former lower bound to show the inevitable distortion over time and empirically observe that Smart achieves good estimation performance. Moreover, we observe that Smart consistently shows outstanding generalization estimation on four real-world evolving graphs. The ablation studies underscore the necessity of graph reconstruction. For example, on OGB-arXiv dataset, the estimation metric MAPE deteriorates from 2.19% to 8.00% without reconstruction.

cs.LG↗