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Bin Zheng

Publications and source records attributed to Bin Zheng.

At least 37 records · Page 2Linked to original sources

Virtual Adversarial Training for Semi-supervised Breast Mass Classification

This study aims to develop a novel computer-aided diagnosis (CAD) scheme for mammographic breast mass classification using semi-supervised learning. Although supervised deep learning has achieved huge success across various medical image analysis tasks, its success relies on large amounts of high-quality annotations, which can be challenging to acquire in practice. To overcome this limitation, we propose employing a semi-supervised method, i.e., virtual adversarial training (VAT), to leverage and learn useful information underlying in unlabeled data for better classification of breast masses. Accordingly, our VAT-based models have two types of losses, namely supervised and virtual adversarial losses. The former loss acts as in supervised classification, while the latter loss aims at enhancing model robustness against virtual adversarial perturbation, thus improving model generalizability. To evaluate the performance of our VAT-based CAD scheme, we retrospectively assembled a total of 1024 breast mass images, with equal number of benign and malignant masses. A large CNN and a small CNN were used in this investigation, and both were trained with and without the adversarial loss. When the labeled ratios were 40% and 80%, VAT-based CNNs delivered the highest classification accuracy of 0.740 and 0.760, respectively. The experimental results suggest that the VAT-based CAD scheme can effectively utilize meaningful knowledge from unlabeled data to better classify mammographic breast mass images.

cs.CV↗

Phase Separation of Polyelectrolytes: The Effect of Charge Regulation

Complex coacervation, known as the liquid-liquid phase separation of solutions with oppositely charged polyelectrolytes, has attracted substantial interest in recent years. We study the effect of the charge regulation (CR) mechanism on the complex coacervation by including short-range interactions between the charged sites on the polymer chains as well as an association-dissociation energy parameter in the CR mechanism. We investigate the phase diagrams of two CR models: (i) the hopping CR model (HCR) and (ii) the asymmetric CR model (ACR). It is shown that during the phase separation that the polymers in the condensed phase are more charged than those in the dilute phase, in accordance with Le Chatelier's principle. In addition, secondary CR effects also influence the change in the volume fraction of the two phases. The latter can cause the charge difference between the two phases to change nonmonotonically as a function of the CR parameters.

cond-mat.soft↗

Automatic Pulmonary Artery-Vein Separation in CT Images using Twin-Pipe Network and Topology Reconstruction

With the development of medical computer-aided diagnostic systems, pulmonary artery-vein(A/V) separation plays a crucial role in assisting doctors in preoperative planning for lung cancer surgery. However, distinguishing arterial from venous irrigation in chest CT images remains a challenge due to the similarity and complex structure of the arteries and veins. We propose a novel method for automatic separation of pulmonary arteries and veins from chest CT images. The method consists of three parts. First, global connection information and local feature information are used to construct a complete topological tree and ensure the continuity of vessel reconstruction. Second, the Twin-Pipe network proposed can automatically learn the differences between arteries and veins at different levels to reduce classification errors caused by changes in terminal vessel characteristics. Finally, the topology optimizer considers interbranch and intrabranch topological relationships to maintain spatial consistency to avoid the misclassification of A/V irrigations. We validate the performance of the method on chest CT images. Compared with manual classification, the proposed method achieves an average accuracy of 96.2% on noncontrast chest CT. In addition, the method has been proven to have good generalization, that is, the accuracies of 93.8% and 94.8% are obtained for CT scans from other devices and other modes, respectively. The result of pulmonary artery-vein obtained by the proposed method can provide better assistance for preoperative planning of lung cancer surgery.

eess.IV↗

Formation of Diblock Copolymer Nanoparticles: Theoretical Aspects

We explore the shape and internal structure of diblock copolymer (di-BCP) nanoparticles (NPs) by using the Ginzburg-Landau free-energy expansion. The self-assembly of di-BCP lamellae confined in emulsion droplets can form either ellipsoidal or onion-like NPs. The corresponding inner structure is a lamellar phase that is either perpendicular to the long axis of the ellipsoids (L$_\perp$) or forms a multi-layer concentric shell (C$_\parallel$), respectively. We focus on the effects of the interaction parameter between the A/B monomers $τ$, and the polymer/solvent $χ$, as well as the NP size on the nanoparticle shape and internal morphology. The aspect ratio ($l_{\rm AR}$) defined as the length ratio between the long and short axes is used to characterize the overall NP shape. Our results show that for the solvent that is neutral towards the two blocks, as $τ$ increases, the $l_{\rm AR}$ of the NP first increases and then decreases, indicating that the NP becomes more elongated and then changes to a spherical NP. Likewise, decreasing $χ$ or increasing the NP size can result in a more elongated NP. However, when the solvent has a preference towards the A or B blocks, the NP shape changes from striped ellipsoid to onion-like sphere by increasing the A/B preference parameter strength. The critical condition of the transition from an L$_\perp$ to C$_\parallel$ phase has been identified. Our results are in good agreement with previous experiments, and some of our predictions could be tested in future experiments.

cond-mat.soft↗

Coarse-to-fine Airway Segmentation Using Multi information Fusion Network and CNN-based Region Growing

Automatic airway segmentation from chest computed tomography (CT) scans plays an important role in pulmonary disease diagnosis and computer-assisted therapy. However, low contrast at peripheral branches and complex tree-like structures remain as two mainly challenges for airway segmentation. Recent research has illustrated that deep learning methods perform well in segmentation tasks. Motivated by these works, a coarse-to-fine segmentation framework is proposed to obtain a complete airway tree. Our framework segments the overall airway and small branches via the multi-information fusion convolution neural network (Mif-CNN) and the CNN-based region growing, respectively. In Mif-CNN, atrous spatial pyramid pooling (ASPP) is integrated into a u-shaped network, and it can expend the receptive field and capture multi-scale information. Meanwhile, boundary and location information are incorporated into semantic information. These information are fused to help Mif-CNN utilize additional context knowledge and useful features. To improve the performance of the segmentation result, the CNN-based region growing method is designed to focus on obtaining small branches. A voxel classification network (VCN), which can entirely capture the rich information around each voxel, is applied to classify the voxels into airway and non-airway. In addition, a shape reconstruction method is used to refine the airway tree.

eess.IV↗

Interpretative Computer-aided Lung Cancer Diagnosis: from Radiology Analysis to Malignancy Evaluation

Background and Objective:Computer-aided diagnosis (CAD) systems promote diagnosis effectiveness and alleviate pressure of radiologists. A CAD system for lung cancer diagnosis includes nodule candidate detection and nodule malignancy evaluation. Recently, deep learning-based pulmonary nodule detection has reached satisfactory performance ready for clinical application. However, deep learning-based nodule malignancy evaluation depends on heuristic inference from low-dose computed tomography volume to malignant probability, which lacks clinical cognition. Methods:In this paper, we propose a joint radiology analysis and malignancy evaluation network (R2MNet) to evaluate the pulmonary nodule malignancy via radiology characteristics analysis. Radiological features are extracted as channel descriptor to highlight specific regions of the input volume that are critical for nodule malignancy evaluation. In addition, for model explanations, we propose channel-dependent activation mapping to visualize the features and shed light on the decision process of deep neural network. Results:Experimental results on the LIDC-IDRI dataset demonstrate that the proposed method achieved area under curve of 96.27% on nodule radiology analysis and AUC of 97.52% on nodule malignancy evaluation. In addition, explanations of CDAM features proved that the shape and density of nodule regions were two critical factors that influence a nodule to be inferred as malignant, which conforms with the diagnosis cognition of experienced radiologists. Conclusion:Incorporating radiology analysis with nodule malignant evaluation, the network inference process conforms to the diagnostic procedure of radiologists and increases the confidence of evaluation results. Besides, model interpretation with CDAM features shed light on the regions which DNNs focus on when they estimate nodule malignancy probabilities.

eess.IV↗

Evaluation of company investment value based on machine learning

In this paper, company investment value evaluation models are established based on comprehensive company information. After data mining and extracting a set of 436 feature parameters, an optimal subset of features is obtained by dimension reduction through tree-based feature selection, followed by the 5-fold cross-validation using XGBoost and LightGBM models. The results show that the Root-Mean-Square Error (RMSE) reached 3.098 and 3.059, respectively. In order to further improve the stability and generalization capability, Bayesian Ridge Regression has been used to train a stacking model based on the XGBoost and LightGBM models. The corresponding RMSE is up to 3.047. Finally, the importance of different features to the LightGBM model is analysed.

q-fin.ST↗

Applying a random projection algorithm to optimize machine learning model for breast lesion classification

Machine learning is widely used in developing computer-aided diagnosis (CAD) schemes of medical images. However, CAD usually computes large number of image features from the targeted regions, which creates a challenge of how to identify a small and optimal feature vector to build robust machine learning models. In this study, we investigate feasibility of applying a random projection algorithm to build an optimal feature vector from the initially CAD-generated large feature pool and improve performance of machine learning model. We assemble a retrospective dataset involving 1,487 cases of mammograms in which 644 cases have confirmed malignant mass lesions and 843 have benign lesions. A CAD scheme is first applied to segment mass regions and initially compute 181 features. Then, support vector machine (SVM) models embedded with several feature dimensionality reduction methods are built to predict likelihood of lesions being malignant. All SVM models are trained and tested using a leave-one-case-out cross-validation method. SVM generates a likelihood score of each segmented mass region depicting on one-view mammogram. By fusion of two scores of the same mass depicting on two-view mammograms, a case-based likelihood score is also evaluated. Comparing with the principle component analyses, nonnegative matrix factorization, and Chi-squared methods, SVM embedded with the random projection algorithm yielded a significantly higher case-based lesion classification performance with the area under ROC curve of 0.84+0.01 (p<0.02). The study demonstrates that the random project algorithm is a promising method to generate optimal feature vectors to help improve performance of machine learning models of medical images.

cs.CV↗

Applying a random projection algorithm to optimize machine learning model for predicting peritoneal metastasis in gastric cancer patients using CT images

Background and Objective: Non-invasively predicting the risk of cancer metastasis before surgery plays an essential role in determining optimal treatment methods for cancer patients (including who can benefit from neoadjuvant chemotherapy). Although developing radiomics based machine learning (ML) models has attracted broad research interest for this purpose, it often faces a challenge of how to build a highly performed and robust ML model using small and imbalanced image datasets. Methods: In this study, we explore a new approach to build an optimal ML model. A retrospective dataset involving abdominal computed tomography (CT) images acquired from 159 patients diagnosed with gastric cancer is assembled. Among them, 121 cases have peritoneal metastasis (PM), while 38 cases do not have PM. A computer-aided detection (CAD) scheme is first applied to segment primary gastric tumor volumes and initially computes 315 image features. Then, two Gradient Boosting Machine (GBM) models embedded with two different feature dimensionality reduction methods, namely, the principal component analysis (PCA) and a random projection algorithm (RPA) and a synthetic minority oversampling technique, are built to predict the risk of the patients having PM. All GBM models are trained and tested using a leave-one-case-out cross-validation method. Results: Results show that the GBM embedded with RPA yielded a significantly higher prediction accuracy (71.2%) than using PCA (65.2%) (p<0.05). Conclusions: The study demonstrated that CT images of the primary gastric tumors contain discriminatory information to predict the risk of PM, and RPA is a promising method to generate optimal feature vector, improving the performance of ML models of medical images.

cs.LG↗

Improving performance of CNN to predict likelihood of COVID-19 using chest X-ray images with preprocessing algorithms

As the rapid spread of coronavirus disease (COVID-19) worldwide, chest X-ray radiography has also been used to detect COVID-19 infected pneumonia and assess its severity or monitor its prognosis in the hospitals due to its low cost, low radiation dose, and wide accessibility. However, how to more accurately and efficiently detect COVID-19 infected pneumonia and distinguish it from other community-acquired pneumonia remains a challenge. In order to address this challenge, we in this study develop and test a new computer-aided diagnosis (CAD) scheme. It includes several image pre-processing algorithms to remove diaphragms, normalize image contrast-to-noise ratio, and generate three input images, then links to a transfer learning based convolutional neural network (a VGG16 based CNN model) to classify chest X-ray images into three classes of COVID-19 infected pneumonia, other community-acquired pneumonia and normal (non-pneumonia) cases. To this purpose, a publicly available dataset of 8,474 chest X-ray images is used, which includes 415 confirmed COVID-19 infected pneumonia, 5,179 community-acquired pneumonia, and 2,880 non-pneumonia cases. The dataset is divided into two subsets with 90% and 10% of images in each subset to train and test the CNN-based CAD scheme. The testing results achieve 94.0% of overall accuracy in classifying three classes and 98.6% accuracy in detecting Covid-19 infected cases. Thus, the study demonstrates the feasibility of developing a CAD scheme of chest X-ray images and providing radiologists useful decision-making supporting tools in detecting and diagnosis of COVID-19 infected pneumonia.

eess.IV↗

Universal Hall coefficient correction in strongly coupled Cr-SiO$_2$ nanogranular metals

The microstructure and electrical transport of Cr$_x$(SiO$_2$)$_{1-x}$ nanogranular films with Cr volume faction $x$$\simeq$0.67 and 0.72 are systematically investigated. The transmission electron microscopy images and elemental mappings indicate that the films are quite inhomogeneous: some Cr granules directly connect to others while some Cr granules with size $\sim$1 to $\sim$3\,nm disperse in the SiO$_2$ dielectric matrix. For each film, the Hall coefficient $R_H$ varies linearly with the natural logarithm of temperature, i.e., $ΔR_H$$\propto$$\ln T$, above $\sim$60\,K, saturates at $\sim$60\,K, and retains the saturating value below $\sim$60\,K. The temperature dependence of Hall coefficient can be explained by the recent theory in granular metals and originates from \emph{virtual diffusion} of electrons through the metallic granules. For the conductivity $σ$, a robust $Δσ$$\propto$$\sqrt{T}$ law is observed from $\sim$50 down to 2\,K. The behavior of the conductivity stems from the ``Altshuler-Aronov" correction, whose influence on the Hall coefficient is not present in the films.

cond-mat.mes-hall↗

SD-CNN: a Shallow-Deep CNN for Improved Breast Cancer Diagnosis

Breast cancer is the second leading cause of cancer death among women worldwide. Nevertheless, it is also one of the most treatable malignances if detected early. Screening for breast cancer with digital mammography (DM) has been widely used. However it demonstrates limited sensitivity for women with dense breasts. An emerging technology in the field is contrast-enhanced digital mammography (CEDM), which includes a low energy (LE) image similar to DM, and a recombined image leveraging tumor neoangiogenesis similar to breast magnetic resonance imaging (MRI). CEDM has shown better diagnostic accuracy than DM. While promising, CEDM is not yet widely available across medical centers. In this research, we propose a Shallow-Deep Convolutional Neural Network (SD-CNN) where a shallow CNN is developed to derive "virtual" recombined images from LE images, and a deep CNN is employed to extract novel features from LE, recombined or "virtual" recombined images for ensemble models to classify the cases as benign vs. cancer. To evaluate the validity of our approach, we first develop a deep-CNN using 49 CEDM cases collected from Mayo Clinic to prove the contributions from recombined images for improved breast cancer diagnosis (0.86 in accuracy using LE imaging vs. 0.90 in accuracy using both LE and recombined imaging). We then develop a shallow-CNN using the same 49 CEDM cases to learn the nonlinear mapping from LE to recombined images. Next, we use 69 DM cases collected from the hospital located at Zhejiang University, China to generate "virtual" recombined images. Using DM alone provides 0.91 in accuracy, whereas SD-CNN improves the diagnostic accuracy to 0.95.

cs.CV↗

Kirigami Metamaterials for Reconfigurable Toroidal Circular Dichroism

The ancient paper craft of kirigami has recently emerged as a potential tool for the design of functional materials. Inspired by the kirigami concept, we propose a class of kirigami-based metamaterials whose electromagnetic functionalities can be switched between nonchiral and chiral states by stretching the predesigned split-ring resonator array. Single-band, dual-band and broadband circular polarizers with reconfigurable performance are experimentally demonstrated with maximum circular dichroisms of 0.88, 0.94 and 0.92, respectively. The underlying mechanism is explained and calculated via detailed analysis of the excited multipoles, including the electric, magnetic, and toroidal dipoles and quadrupole. Our approach enables tailoring the electromagnetic functionalities in kirigami patterns and provides an alternate avenue for reconfigurable optical metadevices with exceptional mechanical properties.

physics.class-ph↗

Three-dimensional visible-light invisibility cloak

The concept of an invisibility cloak is a fixture of science fiction, fantasy, and the collective imagination. However, a real device that could hide an object from sight in visible light from absolutely any viewpoint would be extremely challenging to build. The main obstacle to creating such a cloak is the coupling of the electromagnetic components of light, which would necessitate the use of complex materials with specific permittivity and permeability tensors. Previous cloaking solutions have involved circumventing this obstacle by functioning either in static (or quasi-static) fields where these electromagnetic components are uncoupled or in diffusive light scattering media where complex materials are not required. In this paper, we report concealing a large-scale spherical object from human sight from three orthogonal directions. We achieve this result by developing a three-dimensional (3D) homogeneous polyhedral transformation and a spatially invariant refractive index discretization that considerably reduce the coupling of the electromagnetic components of visible light. This approach allows for a major simplification in the design of 3D invisibility cloaks, which can now be created at a large scale using homogeneous and isotropic materials.

physics.optics↗

Investigation of Gaze Patterns in Multi View Laparoscopic Surgery

Laparoscopic Surgery (LS) is a modern surgical technique whereby the surgery is performed through an incision with tools and camera as opposed to conventional open surgery. This promises minimal recovery times and less hemorrhaging. Multi view LS is the latest development in the field, where the system uses multiple cameras to give the surgeon more information about the surgical site, potentially making the surgery easier. In this publication, we study the gaze patterns of a high performing subject in a multi-view LS environment and compare it with that of a novice to detect the differences between the gaze behavior. This was done by conducting a user study with 20 university students with varying levels of expertise in Multi-view LS. The subjects performed an laparoscopic task in simulation with three cameras (front/top/side). The subjects were then separated as high and low performers depending on the performance times and their data was analyzed. Our results show statistically significant differences between the two behaviors. This opens up new areas from of training novices to Multi-view LS to making smart displays that guide your shows the optimum view depending on the situation.

cs.HC↗

Bistable scattering in graphene-coated dielectric nanowires

In nonlinear plasmonics, the switching threshold of optical bistability is limited by the weak nonlinear responses from the conventional Kerr dielectric media. Considering the giant nonlinear susceptibility of graphene, here we develop a nonlinear scattering model under the mean field approximation and study the bistable scattering in graphene-coated dielectric nanowires based on the semi-analytical solutions. We find that the switching intensities of bistable scattering can be smaller than 1MW/cm2 at the working frequency. To further decrease the switching intensities, we show that the most important factor that restricts the bistable scattering is the relaxation time of graphene, rather than the chemical potential and the permittivity of the dielectric nanowire. Our work not only reveals some general characteristics of graphene-based bistable scattering, but also provides a guidance to further applications of optical bistability in the high speed all-optical signal processing.

physics.optics↗

A two-level stochastic collocation method for semilinear elliptic equations with random coefficients

In this work, we propose a novel two-level discretization for solving semilinear elliptic equations with random coefficients. Motivated by the two-grid method for deterministic partial differential equations (PDEs) introduced by Xu \cite{xu1994novel}, our two-level stochastic collocation method utilizes a two-grid finite element discretization in the physical space and a two-level collocation method in the random domain. In particular, we solve semilinear equations on a coarse mesh $\mathcal{T}_H$ with a low level stochastic collocation (corresponding to the polynomial space $\mathcal{P}_{\boldsymbol{P}}$) and solve linearized equations on a fine mesh $\mathcal{T}_h$ using high level stochastic collocation (corresponding to the polynomial space $\mathcal{P}_{\boldsymbol{p}}$). We prove that the approximated solution obtained from this method achieves the same order of accuracy as that from solving the original semilinear problem directly by stochastic collocation method with $\mathcal{T}_h$ and $\mathcal{P}_{\boldsymbol{p}}$. The two-level method is computationally more efficient than the standard stochastic collocation method for solving nonlinear problems with random coefficients. Numerical experiments are provided to verify the theoretical results.

math.NA↗

Fast multilevel solvers for a class of discrete fourth order parabolic problems

In this paper, we study fast iterative solvers for the solution of fourth order parabolic equations discretized by mixed finite element methods. We propose to use consistent mass matrix in the discretization and use lumped mass matrix to construct efficient preconditioners. We provide eigenvalue analysis for the preconditioned system and estimate the convergence rate of the preconditioned GMRes method. Furthermore, we show that these preconditioners only need to be solved inexactly by optimal multigrid algorithms. Our numerical examples indicate that the proposed preconditioners are very efficient and robust with respect to both discretization parameters and diffusion coefficients. We also investigate the performance of multigrid algorithms with either collective smoothers or distributive smoothers when solving the preconditioner systems.

math.NA↗