arXiv subjects

Biswajit Santra

Publications and source records attributed to Biswajit Santra.

At least 19 recordsLinked to original sources

arXiv2026

Understanding the Density Maximum of Water with Machine Learned Potentials

After melting, at ambient pressure, the density of water continues to increase with temperature until it reaches a maximum around 4 °C. For nearly a century, this phenomenon has been qualitatively attributed to a mixture of ordered and disordered structures. Herein, we employ a deep neural network to train a machine learned (ML) interatomic potential for water using electronic structure data from advanced density functional theory. Notably, molecular dynamics simulations with the ML potential reproduce both the experimental water density anomaly and the thermal expansion coefficient. Detailed structural analysis of the computed hydrogen-bond network reveals that the density anomaly arises from an emergent liquid structure that retains nearly ideal tetrahedral coordination at short range but collapses at intermediate range. Our findings point to a more delicate mechanism causing the density maximum than the conventional picture, emphasizing the collective roles of structural orderings at different length scales.

physics.chem-ph↗

arXiv2025

Efficient Long-Range Machine Learning Force Fields for Liquid and Materials Properties

Machine learning force fields (MLFFs) have emerged as a sophisticated tool for cost-efficient atomistic simulations approaching DFT accuracy, with recent message passing MLFFs able to cover the entire periodic table. We present an invariant message passing MLFF architecture (MPNICE) which iteratively predicts atomic partial charges, including long-range interactions, enabling the prediction of charge-dependent properties while achieving 5-20x faster inference versus models with comparable accuracy. We train direct and delta-learned MPNICE models for organic systems, and benchmark against experimental properties of liquid and solid systems. We also benchmark the energetics of finite systems, contributing a new set of torsion scans with charged species and a new set of DLPNO-CCSD(T) references for the TorsionNet500 benchmark. We additionally train and benchmark MPNICE models for bulk inorganic crystals, focusing on structural ranking and mechanical properties. Finally, we explore multi-task models for both inorganic and organic systems, which exhibit slightly decreased performance on domain-specific tasks but surprising generalization, stably predicting the gas phase structure of $\simeq500$ Pt/Ir organometallic complexes despite never training to organometallic complexes of any kind.

physics.chem-ph↗

arXiv2021

Enabling Large-Scale Condensed-Phase Hybrid Density Functional Theory Based $Ab$ $Initio$ Molecular Dynamics I: Theory, Algorithm, and Performance

By including a fraction of exact exchange (EXX), hybrid functionals reduce the self-interaction error in semi-local density functional theory (DFT), and thereby furnish a more accurate and reliable description of the electronic structure in systems throughout biology, chemistry, physics, and materials science. However, the high computational cost associated with the evaluation of all required EXX quantities has limited the applicability of hybrid DFT in the treatment of large molecules and complex condensed-phase materials. To overcome this limitation, we have devised a linear-scaling yet formally exact approach that utilizes a local representation of the occupied orbitals (e.g., maximally localized Wannier functions, MLWFs) to exploit the sparsity in the real-space evaluation of the quantum mechanical exchange interaction in finite-gap systems. In this work, we present a detailed description of the theoretical and algorithmic advances required to perform MLWF-based ab initio molecular dynamics (AIMD) simulations of large-scale condensed-phase systems at the hybrid DFT level. We provide a comprehensive description of the exx algorithm, which is currently implemented in the Quantum ESPRESSO program and employs a hybrid MPI/OpenMP parallelization scheme to efficiently utilize high-performance computing (HPC) resources. This is followed by a critical assessment of the accuracy and parallel performance of this approach when performing AIMD simulations of liquid water in the canonical ensemble. With access to HPC resources, we demonstrate that exx enables hybrid DFT based AIMD simulations of condensed-phase systems containing 500-1000 atoms with a walltime cost that is comparable to semi-local DFT. In doing so, exx takes us closer to routinely performing AIMD simulations of large-scale condensed-phase systems for sufficiently long timescales at the hybrid DFT level of theory.

physics.comp-ph↗

arXiv2021

Enabling Large-Scale Condensed-Phase Hybrid Density Functional Theory Based $Ab$ $Initio$ Molecular Dynamics II: Extensions to the Isobaric-Isoenthalpic and Isobaric-Isothermal Ensembles

In the previous paper of this series [JCTC 2020, 16, 3757], we presented a theoretical and algorithmic framework based on a localized representation of the occupied space that exploits the inherent sparsity in the real-space evaluation of the EXX interaction in finite-gap systems. This was accompanied by a detailed description of exx, a massively parallel hybrid MPI/OpenMP implementation of this approach in Quantum ESPRESSO that enables linear-scaling hybrid DFT based AIMD in the NVE/NVT ensembles of condensed-phase systems containing 500--1000 atoms (in fixed orthorhombic cells) with a wall time cost comparable to semi-local DFT. In this work, we extend exx to enable hybrid DFT based AIMD of large-scale condensed-phase systems with general and fluctuating cells in the NpH/NpT ensembles. Our theoretical extension includes an analytical derivation of the EXX contribution to the stress tensor for systems in general cells with a computational complexity that scales linearly with system size. The corresponding algorithmic extensions to exx include optimized routines that: (i) handle static/fluctuating cells with non-orthogonal lattice symmetries, (ii) solve Poisson's equation in general cells via an automated selection of the auxiliary grid directions in the Natan-Kronik representation of the discrete Laplacian operator, and (iii) evaluate the EXX contribution to the stress tensor. We also critically assess the computational performance of the extended exx module across several different HPC architectures via case studies on ice Ih, II, and III as well as ambient liquid water. We find that the extended exx can evaluate the EXX contribution to the stress tensor with negligible cost (< 1%) and remains highly scalable, thereby bringing us another step closer to routinely performing hybrid DFT based AIMD for large-scale condensed-phase systems across a wide range of thermodynamic conditions.

cond-mat.mtrl-sci↗

arXiv2021

Exploring and enhancing the accuracy of interior-scaled Perdew-Zunger self-interaction correction

The Perdew-Zunger self-interaction correction(PZ-SIC) improves the performance of density functional approximations(DFAs) for the properties that involve significant self-interaction error(SIE), as in stretched bond situations, but overcorrects for equilibrium properties where SIE is insignificant. This overcorrection is often reduced by LSIC, local scaling of the PZ-SIC to the local spin density approximation(LSDA). Here we propose a new scaling factor to use in an LSIC-like approach that satisfies an additional important constraint: the correct coefficient of atomic number Z in the asymptotic expansion of the exchange-correlation(xc) energy for atoms. LSIC and LSIC+ are scaled by functions of the iso-orbital indicator zσ, which distinguishes one-electron regions from many-electron regions. LSIC+ applied to LSDA works better for many equilibrium properties than LSDA-LSIC and the Perdew, Burke, and Ernzerhof(PBE) generalized gradient approximation(GGA), and almost as well as the strongly constrained and appropriately normed(SCAN) meta-GGA. LSDA-LSIC and LSDA-LSIC+, however, both fail to predict interaction energies involving weaker bonds, in sharp contrast to their earlier successes. It is found that more than one set of localized SIC orbitals can yield a nearly degenerate energetic description of the same multiple covalent bond, suggesting that a consistent chemical interpretation of the localized orbitals requires a new way to choose their Fermi orbital descriptors. To make a locally scaled-down SIC to functionals beyond LSDA requires a gauge transformation of the functional's energy density. The resulting SCAN-sdSIC, evaluated on SCAN-SIC total and localized orbital densities, leads to an acceptable description of many equilibrium properties including the dissociation energies of weak bonds.

physics.chem-ph↗

arXiv2020

Self-Interaction Correction in Water-Ion Clusters

We study the importance of self-interaction errors in density functional approximations for various water-ion clusters. We have employed the Fermi-Löwdin orbital self-interaction correction (FLOSIC) method in conjunction with LSDA, PBE, and SCAN to describe binding energies of hydrogen-bonded water-ion clusters, \textit{i.e.}, water-hydronium, water-hydroxide, water-halide, as well as non-hydrogen-bonded water-alkali clusters. In the hydrogen-bonded water-ion clusters, the building blocks are linked by hydrogen atoms, although the links are much stronger and longer-ranged than the normal hydrogen bonds between water molecules, because the monopole on the ion interacts with both permanent and induced dipoles on the water molecules. We find that self-interaction errors overbind the hydrogen-bonded water-ion clusters and that FLOSIC reduces the error and brings the binding energies into closer agreement with higher-level calculations. The non-hydrogen-bonded water-alkali clusters are not significantly affected by self-interaction errors. Self-interaction corrected PBE predicts the lowest mean unsigned error in binding energies ($\leq$ 50 meV/\ce{H2O}) for hydrogen-bonded water-ion clusters. Self-interaction errors are also largely dependent on the cluster size, and FLOSIC does not accurately capture the subtle variation in all clusters, indicating the need for further refinement.

physics.chem-ph↗

arXiv2020

Isotope effects on molecular structures and electronic properties of liquid water via deep potential molecular dynamics based on SCAN functional

Feynman path-integral deep potential molecular dynamics (PI-DPMD) calculations have been employed to study both light (H$_2$O) and heavy water (D$_2$O) within the isothermal-isobaric ensemble. In particular, the deep neural network is trained based on ab initio data obtained from the strongly constrained and appropriately normed (SCAN) exchange-correlation functional. Because of the lighter mass of hydrogen than deuteron, the properties of light water is more influenced by nuclear quantum effect than those of heavy water. Clear isotope effects are observed and analyzed in terms of hydrogen-bond structure and electronic properties of water that are closely associated with experimental observables. The molecular structures of both liquid H$_2$O and D$_2$O agree well with the data extracted from scattering experiments. The delicate isotope effects on radial distribution functions and angular distribution functions are well reproduced as well. Our approach demonstrates that deep neural network combined with SCAN functional based ab initio molecular dynamics provides an accurate theoretical tool for modeling water and its isotope effects.

physics.chem-ph↗

arXiv2020

Isotope effects in x-ray absorption spectra of liquid water

The isotope effects in x-ray absorption spectra of liquid water are studied by a many-body approach within electron-hole excitation theory. The molecular structures of both light and heavy water are modeled by path-integral molecular dynamics based on the advanced deep-learning technique. The neural network is trained on ab initio data obtained with SCAN density functional theory. The experimentally observed isotope effect in x-ray absorption spectra is reproduced semiquantitatively in theory. Compared to the spectrum in normal water, the blueshifted and less pronounced pre- and main-edge in heavy water reflect that the heavy water is more structured at short- and intermediate-range of the hydrogen-bond network. In contrast, the isotope effect on the spectrum is negligible at post-edge, which is consistent with the identical long-range ordering in both liquids as observed in the diffraction experiment.

cond-mat.dis-nn↗

arXiv2020

The Fermi-Löwdin self-interaction correction for ionization energies of organic molecules

(Semi)-local density functional approximations (DFAs) suffer from self-interaction error (SIE). When the first ionization energy (IE) is computed as the negative of the highest-occupied orbital (HO) eigenvalue, DFAs notoriously underestimate them compared to quasi-particle calculations. The inaccuracy for the HO is attributed to SIE inherent in DFAs. We assessed the IE based on Perdew-Zunger self-interaction corrections on 14 small to moderate-sized organic molecules relevant in organic electronics and polymer donor materials. Though self-interaction corrected DFAs were found to significantly improve the IE relative to the uncorrected DFAs, they overestimate. However, when the self-interaction correction is interiorly scaled using a function of the iso-orbital indicator zσ, only the regions where SIE is significant get a correction. We discuss these approaches and show how these methods significantly improve the description of the HO eigenvalue for the organic molecules.

physics.chem-ph↗

arXiv2020

Simple hydrogenic estimates for the exchange and correlation energies of atoms and atomic ions, with implications for density functional theory

Exact density functionals for the exchange and correlation energies are approximated in practical calculations for the ground-state electronic structure of a many-electron system. An important exact constraint for the construction of approximations is to recover the correct non-relativistic large-$Z$ expansions for the corresponding energies of neutral atoms with atomic number $Z$ and electron number $N=Z$, which are correct to leading order ($-0.221 Z^{5/3}$ and $-0.021 Z \ln Z$ respectively) even in the lowest-rung or local density approximation. We find that hydrogenic densities lead to $E_x(N,Z) \approx -0.354 N^{2/3} Z$ (as known before only for $Z \gg N \gg 1$) and $E_c \approx -0.02 N \ln N$. These asymptotic estimates are most correct for atomic ions with large $N$ and $Z \gg N$, but we find that they are qualitatively and semi-quantitatively correct even for small $N$ and for $N \approx Z$. The large-$N$ asymptotic behavior of the energy is pre-figured in small-$N$ atoms and atomic ions, supporting the argument that widely-predictive approximate density functionals should be designed to recover the correct asymptotics. It is shown that the exact Kohn-Sham correlation energy, when calculated from the pure ground-state wavefunction, should have no contribution proportional to $Z$ in the $Z\to \infty$ limit for any fixed $N$.

physics.chem-ph↗

arXiv2020

A Step in the Direction of Resolving the Paradox of Perdew-Zunger Self-interaction Correction. II. Gauge Consistency of the Energy Density at Three Levels of Approximation

The Perdew-Zunger(PZ) self-interaction correction (SIC) was designed to correct the one-electron limit of any approximate density functional for the exchange-correlation (xc) energy, while yielding no correction to the exact functional. Unfortunately, it spoils the slowly-varying-in-space limits of the uncorrected approximate functionals, where those functionals are right by construction. The right limits can be restored by locally scaling down the energy density of the PZ SIC in many-electron regions, but then a spurious correction to the exact functional would be found unless the self-Hartree and exact self-xc terms of the PZ SIC energy density were expressed in the same gauge. Only the local density approximation satisfies the same-gauge condition for the energy density, which explains why the recent local-scaling SIC (LSIC) is found here to work excellently for atoms and molecules only with this basic approximation, and not with the more advanced generalized gradient approximations (GGAs) and meta-GGAs, which lose the Hartree gauge via simplifying integrations by parts. The transformation of energy density that achieves the Hartree gauge for the exact xc functional can also be applied to approximate functionals. Doing so leads to a simple scaled-down self-interaction (sdSIC) correction that is typically much more accurate than PZ SIC in tests for many molecular properties (including equilibrium bond lengths). The present work shows unambiguously that the largest errors of PZ SIC applied to standard functionals at three levels of approximation can be removed by restoring their correct slowly-varying-density limits. It also confirms the relevance of these limits to atoms and molecules.

physics.chem-ph↗

arXiv2019

A step in the direction of resolving the paradox of Perdew-Zunger self-interaction correction

Self-interaction (SI) error, which results when exchange-correlation contributions to the total energy are approximated, limits the reliability of many density functional approximations. The Perdew-Zunger SI correction (PZSIC), when applied in conjunction with the local spin density approximation (LSDA), improves the description of many properties, but overall, this improvement is limited. Here we propose a modification to PZSIC that uses an iso-orbital indicator to identify regions where local SI corrections should be applied. Using this local-scaling SIC (LSIC) approach with LSDA, we analyze predictions for a wide range of properties including, for atoms, total energies, ionization potentials, and electron affinities, and for molecules, atomization energies, dissociation energy curves, reaction energies, and reaction barrier heights. LSIC preserves the results of PZSIC-LSDA for properties where it is successful and provides dramatic improvements for many of the other properties studied. Atomization energies calculated using LSIC are better than those of the Perdew, Burke, and Ernzerhof (PBE) generalized gradient approximation (GGA) and close to those obtained with the Strongly Constrained and Appropriately Normed (SCAN) meta-GGA. LSIC also restores the uniform gas limit for the exchange energy that is lost in PZSIC-LSDA. Further performance improvements may be obtained by an appropriate combination or modification of the local scaling factor and the particular density functional approximation.

cond-mat.mtrl-sci↗

arXiv2019

Isotope Effects in Liquid Water via Deep Potential Molecular Dynamics

A comprehensive microscopic understanding of ambient liquid water is a major challenge for $ab$ $initio$ simulations as it simultaneously requires an accurate quantum mechanical description of the underlying potential energy surface (PES) as well as extensive sampling of configuration space. Due to the presence of light atoms (e.g., H or D), nuclear quantum fluctuations lead to observable changes in the structural properties of liquid water (e.g., isotope effects), and therefore provide yet another challenge for $ab$ $initio$ approaches. In this work, we demonstrate that the combination of dispersion-inclusive hybrid density functional theory (DFT), the Feynman discretized path-integral (PI) approach, and machine learning (ML) constitutes a versatile $ab$ $initio$ based framework that enables extensive sampling of both thermal and nuclear quantum fluctuations on a quite accurate underlying PES. In particular, we employ the recently developed deep potential molecular dynamics (DPMD) model---a neural-network representation of the $ab$ $initio$ PES---in conjunction with a PI approach based on the generalized Langevin equation (PIGLET) to investigate how isotope effects influence the structural properties of ambient liquid H$_2$O and D$_2$O. Through a detailed analysis of the interference differential cross sections as well as several radial and angular distribution functions, we demonstrate that this approach can furnish a semi-quantitative prediction of these subtle isotope effects.

physics.chem-ph↗

arXiv2019

Perdew-Zunger self-interaction correction: How wrong for uniform densities and large-Z atoms?

Semi-local density functionals for the exchange-correlation energy of a many-electron system cannot be exact for all one-electron densities. In 1981, Perdew and Zunger (PZ) subtracted the fully-nonlocal self-interaction error orbital-by-orbital, making the corrected functional exact for all collections of separated one-electron densities, and making no correction to the exact functional. Although the PZ self-interaction correction (SIC) eliminates many errors of semi-local functionals, it is often worse for equilibrium properties of sp-bonded molecules and solids. Non-empirical semi-local functionals are usually designed to be exact for electron gases of uniform density, and thus also make 0% error for neutral atoms in the limit of large atomic number Z, but PZ SIC is not so designed. For localized SIC orbitals, we show analytically that the LSDA-SIC correlation energy per electron of the uniform gas in the high-density limit makes an error of -50% in the spin-unpolarized case, and -100% in the fully-spin-polarized case. Then we extrapolate from the Ne, Ar, Kr, and Xe atoms to estimate the relative errors of the PZ SIC exchange-correlation energies (with localized SIC orbitals) in the limit of large atomic number: about +5.5% for the local spin density approximation (LSDA-SIC), and about -3.5% for nonempirical generalized gradient (PBE-SIC) and meta-generalized gradient (SCAN-SIC) approximations. The SIC errors are considerably larger than those that have been estimated for LSDA-SIC by approximating the localized SIC orbitals for the uniform gas, and may explain the errors of PZ SIC for equilibrium properties, opening the door to a generalized SIC that is more widely accurate.

physics.chem-ph↗

arXiv2019

Stretched or noded orbital densities and self-interaction correction in density functional theory

Semi-local approximations to the density functional for the exchange-correlation energy of a many-electron system necessarily fail for lobed one-electron densities, including not only the familiar stretched densities but also the less familiar but closely-related noded ones. The Perdew-Zunger (PZ) self-interaction correction (SIC) to a semi-local approximation makes that approximation exact for all one-electron ground- or excited-state densities and accurate for stretched bonds. When the minimization of the PZ total energy is made over real localized orbitals, the orbital densities can be noded, leading to energy errors in many-electron systems. Minimization over complex localized orbitals yields nodeless orbital densities, which reduce but typically do not eliminate the SIC errors of atomization energies. Other errors of PZ SIC remain, attributable to the loss of the exact constraints and appropriate norms that the semi-local approximations satisfy, and suggesting the need for a generalized SIC. These conclusions are supported by calculations for one-electron densities, and for many-electron molecules. While PZ SIC raises and improves the energy barriers of standard generalized gradient approximations (GGA's) and meta-GGA's, it reduces and often worsens the atomization energies of molecules. Thus PZ SIC raises the energy more as the nodality of the valence localized orbitals increases from atoms to molecules to transition states. PZ SIC is applied here in particular to the SCAN meta-GGA, for which the correlation part is already self-interaction-free. That property makes SCAN a natural first candidate for a generalized SIC.

physics.chem-ph↗

arXiv2018

Root-Growth of Boron Nitride Nanotubes: Experiments and \textit{Ab Initio} Simulations

We have synthesized boron nitride nanotubes (BNNTs) in an arc in presence of boron and nitrogen species only, without transition metals. We find that BNNTs are often attached to pure boron nanoparticles, suggesting that root-growth is a likely mechanism for their formation. To gain further insight into this process we have studied key mechanisms for root growth of BNNTs on the surface of a liquid boron droplet by ab initio molecular dynamics simulations. We find that nitrogen atoms reside predominantly on the droplet surface where they organize to form boron nitride islands below 2400 K. To minimize contact with the liquid particle underneath, the islands assume non-planar configurations that are likely precursors for the thermal nucleation of cap structures. Once formed, the caps are stable and can easily incorporate nitrogen and boron atoms at their base, resulting in further growth. Our simulations support the root-growth mechanism of BNNTs and provide comprehensive evidence of the active role played by liquid boron.

physics.chem-ph↗

arXiv2018

Structural, Electronic, and Dynamical Properties of Liquid Water by ab initio Molecular Dynamics based on SCAN Functional within the Canonical Ensemble

We perform ab initio molecular dynamics (AIMD) simulation of liquid water in the canonical ensemble at ambient conditions using the SCAN meta-GGA functional approximation, and carry out systematic comparisons with the results obtained from the GGA-level PBE functional, and Tkatchenko-Scheffler van der Waals (vdW) dispersion correction inclusive PBE functional. We analyze various properties of liquid water including radial distribution functions, oxygen-oxygen-oxygen triplet angular distribution, tetrahedrality, hydrogen bonds, diffusion coefficients, ring statistics, density of states, band gaps, and dipole moments. We find that the SCAN functional is generally more accurate than the other two functionals for liquid water by not only capturing the intermediate-range vdW interactions but also mitigating the overly strong hydrogen bonds prescribed in PBE simulations. We also compare the results of SCAN-based AIMD simulations in the canonical and isothermal-isobaric ensembles. Our results suggest that SCAN provides a reliable description for most structural, electronic, and dynamical properties in liquid water.

cond-mat.soft↗

arXiv2018

Thermal Expansion in Dispersion-Bound Molecular Crystals

We explore how anharmonicity, nuclear quantum effects (NQE), many-body dispersion interactions, and Pauli repulsion influence thermal properties of dispersion-bound molecular crystals. Accounting for anharmonicity with $ab$ $initio$ molecular dynamics yields cell parameters accurate to within 2% of experiment for a set of pyridine-like molecular crystals at finite temperatures and pressures. From the experimental thermal expansion curve, we find that pyridine-I has a Debye temperature just above its melting point, indicating sizable NQE across the entire crystalline range of stability. We find that NQE lead to a substantial volume increase in pyridine-I ($\approx 40$% more than classical thermal expansion at $153$ K) and attribute this to intermolecular Pauli repulsion promoted by intramolecular quantum fluctuations. When predicting delicate properties such as the thermal expansivity, we show that many-body dispersion interactions and sophisticated treatments of Pauli repulsion are needed in dispersion-bound molecular crystals.

cond-mat.mtrl-sci↗