SearcharxivSearch

arXiv subjects

Blas Echebarria

Publications and source records attributed to Blas Echebarria.

9 recordsLinked to original sources

Black and Gray Box Learning of Amplitude Equations: Application to Phase Field Systems

We present a data-driven approach to learning surrogate models for amplitude equations, and illustrate its application to interfacial dynamics of phase field systems. In particular, we demonstrate learning effective partial differential equations describing the evolution of phase field interfaces from full phase field data. We illustrate this on a model phase field system, where analytical approximate equations for the dynamics of the phase field interface (a higher order eikonal equation and its approximation, the Kardar-Parisi-Zhang (KPZ) equation) are known. For this system, we discuss data-driven approaches for the identification of equations that accurately describe the front interface dynamics. When the analytical approximate models mentioned above become inaccurate, as we move beyond the region of validity of the underlying assumptions, the data-driven equations outperform them. In these regimes, going beyond black-box identification, we explore different approaches to learn data-driven corrections to the analytically approximate models, leading to effective gray box partial differential equations.

stat.ML

Amplitude equation approach to spatiotemporal dynamics of cardiac alternans

Amplitude equations are derived that describe the spatiotemporal dynamics of cardiac alternans during periodic pacing of one- and two-dimensional homogeneous tissue and one-dimensional anatomical reentry in a ring of homogeneous tissue. These equations provide a simple physical understanding of arrhythmogenic patterns of period-doubling oscillations of action potential duration with a spatially varying phase and amplitude as well as explicit quantitative predictions that can be compared to ionic model simulations or experiments. The form of the equations is expected to be valid for a large class of ionic models but the coefficients are only derived analytically for a two-variable ionic model and calculated numerically for the original Noble model of Purkinje fiber action potential.In paced tissue, the main result is the existence of a linear instability that produces a periodic pattern of discordant alternans. Moreover, the patterns of alternans can be either stationary, with fixed nodes, or travelling, with moving nodes and hence quasiperiodic oscillations of action potential duration, depending on the relative strength of the destabilizing effect of CV-restitution and the stabilizing effect of diffusive coupling. In both the paced geometries and the ring, the onset of alternans is different in tissue than for a paced isolated cell. The implications of these results for alternans dynamics during two-dimensional reentry are briefly discussed.

q-bio.TO

Quantitative Phase Field Model of Alloy Solidification

We present a detailed derivation and thin interface analysis of a phase-field model that can accurately simulate microstructural pattern formation for low-speed directional solidification of a dilute binary alloy. This advance with respect to previous phase-field models is achieved by the addition of a phenomenological "antitrapping" solute current in the mass conservation relation [A. Karma, Phys. Rev. Lett 87, 115701 (2001)]. This antitrapping current counterbalances the physical, albeit artificially large, solute trapping effect generated when a mesoscopic interface thickness is used to simulate the interface evolution on experimental length and time scales. Furthermore, it provides additional freedom in the model to suppress other spurious effects that scale with this thickness when the diffusivity is unequal in solid and liquid [R. F. Almgren, SIAM J. Appl. Math 59, 2086 (1999)], which include surface diffusion and a curvature correction to the Stefan condition. This freedom can also be exploited to make the kinetic undercooling of the interface arbitrarily small even for mesoscopic values of both the interface thickness and the phase-field relaxation time, as for the solidification of pure melts [A. Karma and W.-J. Rappel, Phys. Rev. E 53, R3017 (1996)]. The performance of the model is demonstrated by calculating accurately for the first time within a phase-field approach the Mullins-Sekerka stability spectrum of a planar interface and nonlinear cellular shapes for realistic alloy parameters and growth conditions.

cond-mat.mtrl-sci

Instability and Spatiotemporal Dynamics of Alternans in Paced Cardiac Tissue

We derive an equation that governs the spatiotemporal dynamics of small amplitude alternans in paced cardiac tissue. We show that a pattern-forming linear instability leads to the spontaneous formation of stationary or traveling waves whose nodes divide the tissue into regions with opposite phase of oscillation of action potential duration. This instability is important because it creates dynamically an heterogeneous electrical substrate for inducing fibrillation if the tissue size exceeds a fraction of the pattern wavelength. We compute this wavelength analytically as a function of three basic length scales characterizing dispersion and inter-cellular electrical coupling.

cond-mat.stat-mech

Sideband Instabilities and Defects of Quasipatterns

Quasipatterns have been found in dissipative systems ranging from Faraday waves in vertically vibrated fluid layers to nonlinear optics. We describe the dynamics of octagonal, decagonal and dodecagonal quasipatterns by means of coupled Ginzburg-Landau equations and study their stability to sideband perturbations analytically using long-wave equations as well as by direct numerical simulation. Of particular interest is the influence of the phason modes, which are associated with the quasiperiodicity, on the stability of the patterns. In the dodecagonal case, in contrast to the octagonal and the decagonal case, the phase modes and the phason modes decouple and there are parameter regimes in which the quasipattern first becomes unstable with respect to phason modes rather than phase modes. We also discuss the different types of defects that can arise in each kind of quasipattern as well as their dynamics and interactions. Particularly interesting is the decagonal quasipattern, which allows two different types of defects. Their mutual interaction can be extremely weak even at small distances.

nlin.PS

Stability of Oscillating Hexagons in Rotating Convection

Breaking the chiral symmetry, rotation induces a secondary Hopf bifurcation in weakly nonlinear hexagon patterns which gives rise to oscillating hexagons. We study the stability of the oscillating hexagons using three coupled Ginzburg-Landau equations. Close to the bifurcation point we derive reduced equations for the amplitude of the oscillation, coupled to the phase of the underlying hexagons. Within these equation we identify two types of long-wave instabilities and study the ensuing dynamics using numerical simulations of the three coupled Ginzburg-Landau equations.

nlin.PS

Defect Chaos of Oscillating Hexagons in Rotating Convection

Using coupled Ginzburg-Landau equations, the dynamics of hexagonal patterns with broken chiral symmetry are investigated, as they appear in rotating non-Boussinesq or surface-tension-driven convection. We find that close to the secondary Hopf bifurcation to oscillating hexagons the dynamics are well described by a single complex Ginzburg-Landau equation (CGLE) coupled to the phases of the hexagonal pattern. At the bandcenter these equations reduce to the usual CGLE and the system exhibits defect chaos. Away from the bandcenter a transition to a frozen vortex state is found.

patt-sol

Instabilities of Hexagonal Patterns with Broken Chiral Symmetry

Three coupled Ginzburg-Landau equations for hexagonal patterns with broken chiral symmetry are investigated. They are relevant for the dynamics close to onset of rotating non-Boussinesq or surface-tension-driven convection. Steady and oscillatory, long- and short-wave instabilities of the hexagons are found. For the long-wave behavior coupled phase equations are derived. Numerical simulations of the Ginzburg-Landau equations indicate bistability between spatio-temporally chaotic patterns and stable steady hexagons. The chaotic state can, however, not be described properly with the Ginzburg-Landau equations.

patt-sol

Resonant interactions in Bénard-Marangoni convection in cylindrical containers

Convection in a cylindrical container of small aspect ratio is studied. It is known that when, in addition to buoyancy forces, thermocapillarity effects are taken into account, resonant interactions of two modes may appear. In the case of 1:2 resonance amplitude equations are derived, showing the existence of a stable heteroclinic orbit and rotating waves, until now not observed experimentally.

chao-dyn