BloodCounts! Consortium

arXiv2024

FedMAP: Personalised Federated Learning for Real Large-Scale Healthcare Systems

Federated learning (FL) promises to enable collaborative machine learning across healthcare sites whilst preserving data privacy. Practical deployment remains limited by statistical heterogeneity arising from differences in patient demographics, treatments, and outcomes, and infrastructure constraints. We introduce FedMAP, a personalised FL (PFL) framework that addresses heterogeneity through local Maximum a Posteriori (MAP) estimation with Input Convex Neural Network priors. These priors represent global knowledge gathered from other sites that guides the model while adapting to local data, and we provide a formal proof of convergence. Unlike many PFL methods that rely on fixed regularisation, FedMAP's prior adaptively learns patterns that capture complex inter-site relationships. We demonstrate improved performance compared to local training, FedAvg, and several PFL methods across three large-scale clinical datasets: 10-year cardiovascular risk prediction (CPRD, 387 general practitioner practices, 258,688 patients), iron deficiency detection (INTERVAL, 4 donor centres, 31,949 blood donors), and mortality prediction (eICU, 150 hospitals, 44,842 patients). FedMAP incorporates a three-tier design that enables participation across healthcare sites with varying infrastructure and technical capabilities, from full federated training to inference-only deployment. Geographical analysis reveals substantial equity improvements, with underperforming regions achieving up to 14.3% performance gains. This framework provides the first practical pathway for large-scale healthcare FL deployment, which ensures clinical sites at all scales can benefit, equity is enhanced, and privacy is retained.

cs.LG↗

arXiv2023

Dis-AE: Multi-domain & Multi-task Generalisation on Real-World Clinical Data

Clinical data is often affected by clinically irrelevant factors such as discrepancies between measurement devices or differing processing methods between sites. In the field of machine learning (ML), these factors are known as domains and the distribution differences they cause in the data are known as domain shifts. ML models trained using data from one domain often perform poorly when applied to data from another domain, potentially leading to wrong predictions. As such, developing machine learning models that can generalise well across multiple domains is a challenging yet essential task in the successful application of ML in clinical practice. In this paper, we propose a novel disentangled autoencoder (Dis-AE) neural network architecture that can learn domain-invariant data representations for multi-label classification of medical measurements even when the data is influenced by multiple interacting domain shifts at once. The model utilises adversarial training to produce data representations from which the domain can no longer be determined. We evaluate the model's domain generalisation capabilities on synthetic datasets and full blood count (FBC) data from blood donors as well as primary and secondary care patients, showing that Dis-AE improves model generalisation on multiple domains simultaneously while preserving clinically relevant information.

cs.LG↗