arXiv subjects

Boqin Yuan

Publications and source records attributed to Boqin Yuan.

10 recordsLinked to original sources

arXiv2026

CALICO: A Human-Centered, Codebook-Aligned System for Annotation

Large language models are increasingly used to scale codebook-based annotation in scientific research, but existing workflows provide limited support for translating domain experts' codebooks into reliable, revisable, and auditable prompts. Prompts are often treated as fixed instructions and hidden from annotators, making it difficult for non-technical domain experts to diagnose and correct model behavior when outputs violate codebook guidelines. In this paper, we present CALICO, a human-centered, codebook-aligned annotation workflow that treats prompts as editable, versioned, and optimizable artifacts. CALICO integrates codebook parsing, prompt generation, result inspection, prompt versioning, natural language human feedback, and label-supervised prompt optimization through existing optimizers such as GEPA, MIPROv2, and OPRO, together with our reflection-based optimizer, ReflectAgent. Empirically, we evaluate CALICO on domain-specific AI-companion chatbot conversation codebooks. Across evaluated dimensions, CALICO improves mean held-out performance by +13.0 and +7.4 absolute points for two coders, respectively. A coder-specificity analysis further suggests that optimized prompts capture coder-specific interpretations rather than only generic codebook clarification. CALICO runs as a web application that takes users from raw codebook materials to inspectable, exportable labels; the website, codebase, and live demo are released at https://calico-annotation.github.io/ under the Apache 2.0 License.

cs.HC↗

arXiv2026

Harbor Adapters and Harbor-Index: Infrastructure and a Curated Meta-Dataset for Large-Scale Agentic Evaluation

Evaluating agents on the growing number of agentic benchmarks is challenging because they often require complex environments and agent integrations. We introduce Harbor Adapters, a unified evaluation infrastructure for agentic benchmarks. Our work makes three contributions. First, we develop benchmark adapters that port more than 80 benchmarks to evaluate arbitrary agents, and validate them through rigorous code review and parity experiments. Second, we conduct a large-scale evaluation of 8 models spanning capability tiers across 54 benchmarks; every model is run with Terminus-2 and with one of 3 native harnesses. This enables a broader analysis of agent capabilities and failure modes than was previously possible. Third, we introduce Harbor-Index, a curated set of 82 difficult, diverse, and high-quality tasks spanning 29 benchmarks, refined from the adapted suite through difficulty filtering, AI and human audit, and an audit-and-fix loop. Harbor-Index preserves the challenge and breadth of large-scale agentic evaluations while being affordable to run; no evaluated model-harness configuration exceeds 30% pass rate, and the strongest (GPT-5.5 with Codex) reaches 28.0%. We release the adapters, evaluation results, in-depth analysis, and Harbor-Index as open-source artifacts to support more reliable and comprehensive evaluation of language-model agents.

cs.AI↗

arXiv2026

CodeNib: A Multi-View Data System for Serving Repository Context to Coding Agents

Coding agents repeatedly search, navigate, and retain context from evolving repositories, but disconnected indexes, language servers, and task-local histories force repeated discovery and obscure lifecycle costs. CodeNib builds reusable lexical, dense, and structural views per repository commit, maps outputs to repository-relative source ranges, maintains selected views across edits, and serves ranked search, symbol navigation, and bounded context through one runtime. Across 100 snapshots, we map quality-cost frontiers across the repository-context lifecycle. When outputs match an independent rebuild, graph and vector updates are $8.7\times$ and $25.4\times$ faster at the median. On the static-navigation subset matching normalized live-server locations (63% of 1,000 requests), the median per-request live/static latency ratio is $4.7\times$. Across five models, selected context policies preserve localization with 50--87% fewer trajectory tokens than paired grep/read. Together, these results support multi-view repository-context serving with explicit, operation-specific validity boundaries.

cs.SE↗

arXiv2026

L-MARS: Legal Multi-Agent System with Agentic Search and Citation-Faithfulness Audit

Large language models are increasingly deployed for legal question answering, where evaluations typically focus on multiple-choice accuracy. This measure overlooks a common failure: whether the citation source attached to an answer exists and supports the rule the system attributes to it. We present L-MARS, an open multi-agent legal QA system with agentic search and judge-driven evidence checks, and audit it claim by claim against its cited source. Each atomic claim is labelled with a six-class taxonomy and scored with strict-ALCE under cross-provider judging, where the answerer and verifier come from different model families. On a stratified 100-question Bar Exam audit, retrieval barely moves accuracy, yet the multi-turn judge loop lifts strict citation F1 from 0.13 (naive RAG) to 0.25 and cuts the no-citation rate from 34% to 13%. We further introduce Faith-Search, a post-draft step that re-verifies and repairs unreachable citations; it drops the unreachable rate below 1% but does not improve F1 over the multi-turn loop, so we report it as a targeted reachability intervention rather than a faithfulness breakthrough. A 50-question LegalSearchQA case study confirms the picture: retrieve-then-draft pipelines saturate near 0.75 citation F1, while a single-agent web-search baseline collapses to 0.22 under external audit.

cs.AI↗

arXiv2026

SkillsBench: Benchmarking How Well Agent Skills Work Across Diverse Tasks

Agent Skills are structured packages of procedural knowledge that augment large language model (LLM) agents at inference time. Despite rapid adoption, there is no standard way to measure whether they actually help. We present SkillsBench, a benchmark whose current inventory contains 87 tasks across 8 domains paired with curated Skills and deterministic verifiers. Our latest aggregate evaluation runs the 87-task benchmark under matched no-Skills and curated-Skills conditions for 18 model-harness configurations. Curated Skills raise the average pass rate from 33.9% to 50.5% (+16.6 percentage points; 25.5% normalized gain), with configuration-level gains ranging from +4.1 to +25.7 pp. Focused Skills with at most three modules outperform larger or exhaustive bundles, and smaller models with Skills can match larger models without them. SkillsBench establishes paired evaluation as the foundation for rigorous measurement of Skill efficacy on agentic, expertise-heavy work.

cs.AI↗

arXiv2026

AMA-Bench: Evaluating Long-Horizon Memory for Agentic Applications

Large Language Models (LLMs) are increasingly used as autonomous agents in complex, long-horizon applications, where effective memory is critical for sustained performance. Yet existing memory benchmarks are largely dialogue-centric, while real agent memory consists of continuous agent-environment interaction trajectories composed of states, actions, observations, and tool outputs. To address this gap, we introduce **AMA-Bench** (**A**gent **M**emory with **A**ny length), a benchmark for evaluating long-horizon memory in realistic agentic settings. AMA-Bench combines real-world agent trajectories from representative applications with expert-curated QA, as well as synthetic trajectories that scale to arbitrary horizons with rule-based QA. Our study shows that existing memory systems underperform because they fail to capture causal and objective information and rely heavily on lossy similarity-based retrieval. We further propose **AMA-Agent**, a memory system based on causality-graph construction and tool-augmented retrieval. AMA-Agent achieves **57.22%** accuracy on AMA-Bench, outperforming the strongest baseline by **11.16%**. Resources are available at: [https://ama-bench.github.io/](https://ama-bench.github.io/).

cs.AI↗

arXiv2026

ClawTrace: Cost-Aware Tracing for LLM Agent Skill Distillation

Skill-distillation pipelines learn reusable rules from LLM agent trajectories, but they lack a key signal: how much each step costs. Without per-step cost, a pipeline cannot distinguish adding a missing step to fix a bug from removing an expensive step that never affected the outcome. We use the cost-attribution gap to ask whether the rule types inside a distilled skill transfer the same way to new tasks. ClawTrace records cost-attributed agent traces and compiles each session into a TraceCard; CostCraft reads TraceCards and writes three kinds of skill patches: preserve, prune, and repair. We find a pattern aggregate metrics hide. On 30 held-out SpreadsheetBench tasks across two seeds, removing prune patches roughly tripled the quality-regression count without lowering median cost. Across the full 84-task SkillsBench transfer, CostCraft saves no aggregate cost. All three quality regressions trace to the preserve lane, and both quality wins trace to the prune lane: prune patches act as quality guardrails while preserve patches drive regressions. We argue that reusable agent skills should be evaluated at the rule-type level, not as monolithic instruction packages. To support this, we release ClawTrace, the TraceCard schema, and the full set of typed skills.

cs.AI↗

arXiv2026

Diagnosing Retrieval vs. Utilization Bottlenecks in LLM Agent Memory

Memory-augmented LLM agents store and retrieve information from prior interactions, yet the relative importance of how memories are written versus how they are retrieved remains unclear. We introduce a diagnostic framework that analyzes how performance differences manifest across write strategies, retrieval methods, and memory utilization behavior, and apply it to a 3x3 study crossing three write strategies (raw chunks, Mem0-style fact extraction, MemGPT-style summarization) with three retrieval methods (cosine, BM25, hybrid reranking). On LoCoMo, retrieval method is the dominant factor: average accuracy spans 20 points across retrieval methods (57.1% to 77.2%) but only 3-8 points across write strategies. Raw chunked storage, which requires zero LLM calls, matches or outperforms expensive lossy alternatives, suggesting that current memory pipelines may discard useful context that downstream retrieval mechanisms fail to compensate for. Failure analysis shows that performance breakdowns most often manifest at the retrieval stage rather than at utilization. We argue that, under current retrieval practices, improving retrieval quality yields larger gains than increasing write-time sophistication. Code is publicly available at https://github.com/boqiny/memory-probe.

cs.AI↗

arXiv2025

aiXiv: A Next-Generation Open Access Ecosystem for Scientific Discovery Generated by AI Scientists

Recent advances in large language models (LLMs) have enabled AI agents to autonomously generate scientific proposals, conduct experiments, author papers, and perform peer reviews. Yet this flood of AI-generated research content collides with a fragmented and largely closed publication ecosystem. Traditional journals and conferences rely on human peer review, making them difficult to scale and often reluctant to accept AI-generated research content; existing preprint servers (e.g. arXiv) lack rigorous quality-control mechanisms. Consequently, a significant amount of high-quality AI-generated research lacks appropriate venues for dissemination, hindering its potential to advance scientific progress. To address these challenges, we introduce aiXiv, a next-generation open-access platform for human and AI scientists. Its multi-agent architecture allows research proposals and papers to be submitted, reviewed, and iteratively refined by both human and AI scientists. It also provides API and MCP interfaces that enable seamless integration of heterogeneous human and AI scientists, creating a scalable and extensible ecosystem for autonomous scientific discovery. Through extensive experiments, we demonstrate that aiXiv is a reliable and robust platform that significantly enhances the quality of AI-generated research proposals and papers after iterative revising and reviewing on aiXiv. Our work lays the groundwork for a next-generation open-access ecosystem for AI scientists, accelerating the publication and dissemination of high-quality AI-generated research content. Code: https://github.com/aixiv-org aiXiv: https://aixiv.science

cs.AI↗

arXiv2025

PRO-V-R1: Reasoning Enhanced Programming Agent for RTL Verification

Register-Transfer Level (RTL) verification is a primary bottleneck, consuming 60-70% of development time. While Large Language Models (LLMs) show promise for RTL automation, their performance and research focus have overwhelmingly centered on RTL generation rather than verification. Current methods for RTL verification rely on large scale proprietary models (e.g., GPT-4o) to generate Python-based functional references, incurring a high cost and raising data-privacy risks. To date, an end-to-end open-source solution for autonomous verification remains absent. We introduce PRO-V-R1, the first trainable open-source agentic framework for autonomous RTL verification. Our contributions are threefold: (1) we design PRO-V sys, a modular agentic system that couples LLM-based reasoning with programmatic tool use for RTL verification; (2) we establish a data construction pipeline that leverages existing RTL datasets to build simulation-validated, expert-level trajectories tailored for supervised fine-tuning (SFT) RTL verification agents; and (3) we implement an efficient reinforcement learning (RL) algorithm that uses verification-specific rewards derived from program-tool feedback to optimize the end-to-end verification workflow. Our empirical evaluation demonstrates PRO-V-R1 achieves a 57.7% functional correctness rate and 34.0% in robust fault detection, significantly outperforming the base model's 25.7% and 21.8% (respectively) from the state-of-the-art (SOTA) automatic verification system. This configuration also outperforms large-scale proprietary LLMs in functional correctness and shows comparable robustness for fault detection.

cs.AI↗