arXiv subjects

Boris Kozinsky

Publications and source records attributed to Boris Kozinsky.

At least 37 records · Page 2Linked to original sources

arXiv2025

A practical guide to machine learning interatomic potentials -- Status and future

The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years.

cond-mat.mtrl-sci↗

arXiv2025

Room-temperature decomposition of the ethaline deep eutectic solvent

Environmentally-benign, non-toxic electrolytes with combinatorial design spaces are excellent candidates for green solvents, green leaching agents, and carbon capture sources. Here, we examine one particular green solvent, ethaline, a 2:1 molar ratio of ethylene glycol and choline chloride. Despite its touted green credentials, we find partial decomposition of ethaline into toxic chloromethane and dimethylaminoethanol at room temperature, limiting its sustainable advantage. We experimentally characterize these decomposition products and computationally develop a general, quantum chemically-accurate workflow to understand decomposition. We find that fluctuations of the hydrogen bonds bind chloride near reaction sites, initiating the reaction between choline cations and chloride anions. In summary, in the design of green solvents, we do not recommend the use of choline chloride due to its susceptibility to undergo decomposition in strongly hydrogen-bound mixtures.

physics.chem-ph↗

arXiv2024

Atomistic simulations of out-of-equilibrium quantum nuclear dynamics

The rapid advancements in ultrafast laser technology have paved the way for pumping and probing the out-of-equilibrium dynamics of nuclei in crystals. However, interpreting these experiments is extremely challenging due to the complex nonlinear responses in systems where lattice excitations interact, particularly in crystals composed of light atoms or at low temperatures where the quantum nature of ions becomes significant. In this work, we address the nonequilibrium quantum ionic dynamics from first principles. Our approach is general and can be applied to simulate any crystal, in combination with a first-principles treatment of electrons or external machine-learning potentials. It is implemented by leveraging the nonequilibrium time-dependent self-consistent harmonic approximation (TD-SCHA), with a stable, energy-conserving, correlated stochastic integration scheme that achieves an accuracy of $\mathcal{O}(dt^3)$. We benchmark the method with both a simple one-dimensional model to test its accuracy and a realistic 40-atom cell of SrTiO3 under THz laser pump, paving the way for simulations of ultrafast THz-Xray pump-probe spectroscopy like those performed in synchrotron facilities.

cond-mat.other↗

arXiv2024

Ultrafast quantum dynamics in $\mathbf{\mathrm{SrTiO_3}}$ under impulsive THz radiation

Ultrafast spectroscopy paved the way for probing transient states of matter produced through photoexcitation. Despite significant advances, the microscopic processes governing the formation of these states remain largely unknown. This study discloses the nuclear quantum dynamics of $\mathrm{SrTiO_3}$ when excited by THz laser pumping. We use a first-principles machine-learning approach accounting for all atomistic degrees of freedom to examine the time-resolved energy flow across phonon modes following the photoexcitation, revealing the mechanism underpinning the observed phonon upconversion and quantifying the lifetime of the out-of-equilibrium motion. Crucially, our simulations predict that THz pump pulses can generate persistent out-of-equilibrium stress capable of inducing polar order. We observe a correlation between the experimentally measured lifetime of the transient inversion-symmetry-broken state and the duration of the out-of-equilibrium nuclear state. This work not only explains the experimental results on $\mathrm{SrTiO_3}$ but also establishes a framework for simulating the photoexcited quantum dynamics of nuclei from first principles without any empirical input. It lays the groundwork for systematic explorations of complex materials sensitive to photoexcitation.

cond-mat.mtrl-sci↗

arXiv2024

Nonlocal Machine-Learned Exchange Functional for Molecules and Solids

The design of better exchange-correlation functionals for Density Functional Theory (DFT) is a central challenge of modern electronic structure theory. However, current developments are limited by the mathematical form of the functional, with efficient semilocal functionals being inaccurate for many technologically important systems and the more accurate hybrid functionals being too expensive for large solid-state systems due to the use of the exact exchange operator. In this work, we use machine learning combined with exact physical constraints to design an exchange functional that is both orbital-dependent and nonlocal, but which can be evaluated at roughly the cost of semilocal functionals and is significantly faster than hybrid DFT in plane-wave codes. By training functionals with several different feature sets, we elucidate the roles of orbital-dependent and nonlocal features in learning the exchange energy and determine that both types of features provide vital and independently important information to the model. Having trained our new exchange functional with an expressive, nonlocal feature set, we substitute it into existing hybrid functionals to achieve hybrid-DFT accuracy on thermochemical benchmark sets and improve the accuracy of band gap predictions over semilocal DFT. To demonstrate the scalability of our approach as well as the practical benefits of improved band gap prediction, we compute charged defect transition levels in silicon using large supercells. Due to its transferability and computational efficiency for both molecular and extended systems, our model overcomes the cost-accuracy trade-off between semilocal and hybrid DFT, and our general approach provides a feasible path toward a universal exchange-correlation functional with post-hybrid DFT accuracy and semilocal DFT cost.

physics.chem-ph↗

arXiv2024

Atomistic evolution of active sites in multi-component heterogeneous catalysts

Multi-component metal nanoparticles (NPs) are of paramount importance in the chemical industry, as most processes therein employ heterogeneous catalysts. While these multi-component systems have been shown to result in higher product yields, improved selectivities, and greater stability through catalytic cycling, the structural dynamics of these materials in response to various stimuli (e.g. temperature, adsorbates, etc.) are not understood with atomistic resolution. Here, we present a highly accurate equivariant machine-learned force field (MLFF), constructed from ab initio training data collected using Bayesian active learning, that is able to reliably simulate PdAu surfaces and NPs in response to thermal treatment as well as exposure to reactive H$_2$ atmospheres. We thus provide a single model that is able to reliably describe the full space of geometric and chemical complexity for such a heterogeneous catalytic system across single crystals, gas-phase interactions, and NPs reacting with H$_2$, including catalyst degradation and explicit reactivity. Ultimately, we provide direct atomistic evidence that verifies existing experimental hypotheses for bimetallic catalyst deactivation under reaction conditions, namely that Pd preferentially segregates into the Au bulk through aggressive catalytic cycling and that this degradation is site-selective, as well as the reactivity for hydrogen exchange as a function of Pd ensemble size. We demonstrate that understanding of the atomistic evolution of these active sites is of the utmost importance, as it allows for design and control of material structure and corresponding performance, which can be vetted in silico.

cond-mat.mtrl-sci↗

arXiv2024

Surface roughening in nanoparticle catalysts

Supported metal nanoparticle (NP) catalysts are vital for the sustainable production of chemicals, but their design and implementation are limited by the ability to identify and characterize their structures and atomic sites that are correlated with high catalytic activity. Identification of these ''active sites'' has relied heavily on extrapolation to supported NP systems from investigation of idealized surfaces, experimentally using single crystals or supported NPs which are always modelled computationally using slab or regular polyhedra models. However, the ability of these methods to predict catalytic activity remains qualitative at best, as the structure of metal NPs in reactive environments has only been speculated from indirect experimental observations, or otherwise remains wholly unknown. Here, by circumventing these limitations for highly accurate simulation methods, we provide direct atomistic insight into the dynamic restructuring of metal NPs by combining in situ spectroscopy with molecular dynamics simulations powered by a machine learned force field. We find that in reactive environments, NP surfaces evolve to a state with poorly defined atomic order, while the core of the NP may remain bulk-like. These insights prove that long-standing conceptual models based on idealized faceting for small metal NP systems are not representative of real systems under exposure to reactive environments. We show that the resultant structure can be elucidated by combining advanced spectroscopy and computational tools. This discovery exemplifies that to enable faithful quantitative predictions of catalyst function and stability, we must move beyond idealized-facet experimental and theoretical models and instead employ systems which include realistic surface structures that respond to relevant physical and chemical conditions.

cond-mat.mtrl-sci↗

arXiv2024

Transferability and Accuracy of Ionic Liquid Simulations with Equivariant Machine Learning Interatomic Potentials

Ionic liquids (ILs) are an exciting class of electrolytes finding applications in many areas from energy storage to solvents, where they have been touted as ``designer solvents'' as they can be mixed to precisely tailor the physiochemical properties. As using machine learning interatomic potentials (MLIPs) to simulate ILs is still relatively unexplored, several questions need to be answered to see if MLIPs can be transformative for ILs. Since ILs are often not pure, but are either mixed together or contain additives, we first demonstrate that a MLIP can be trained to be compositionally transferable, i.e., the MLIP can be applied to mixtures of ions not directly trained on, whilst only being trained on a few mixtures of the same ions. We also investigate the accuracy of MLIPs for a novel IL, which we experimentally synthesize and characterize. Our MLIP trained on $\sim$200 DFT frames is in reasonable agreement with our experiments and DFT.

physics.chem-ph↗

arXiv2024

Unified Differentiable Learning of Electric Response

Predicting response of materials to external stimuli is a primary objective of computational materials science. However, current methods are limited to small-scale simulations due to the unfavorable scaling of computational costs. Here, we implement an equivariant machine-learning framework where response properties stem from exact differential relationships between a generalized potential function and applied external fields. Focusing on responses to electric fields, the method predicts electric enthalpy, forces, polarization, Born charges, and polarizability within a unified model enforcing the full set of exact physical constraints, symmetries and conservation laws. Through application to $α$-SiO$_2$, we demonstrate that our approach can be used for predicting vibrational and dielectric properties of materials, and for conducting large-scale dynamics under arbitrary electric fields at unprecedented accuracy and scale. We apply our method to ferroelectric BaTiO$_3$ and capture the temperature-dependence and time evolution of hysteresis, revealing the underlying microscopic mechanisms of nucleation and growth that govern ferroelectric domain switching.

cond-mat.mtrl-sci↗

arXiv2024

A Recipe for Charge Density Prediction

In density functional theory, charge density is the core attribute of atomic systems from which all chemical properties can be derived. Machine learning methods are promising in significantly accelerating charge density prediction, yet existing approaches either lack accuracy or scalability. We propose a recipe that can achieve both. In particular, we identify three key ingredients: (1) representing the charge density with atomic and virtual orbitals (spherical fields centered at atom/virtual coordinates); (2) using expressive and learnable orbital basis sets (basis function for the spherical fields); and (3) using high-capacity equivariant neural network architecture. Our method achieves state-of-the-art accuracy while being more than an order of magnitude faster than existing methods. Furthermore, our method enables flexible efficiency-accuracy trade-offs by adjusting the model/basis sizes.

physics.comp-ph↗

arXiv2024

Thermodynamically Informed Multimodal Learning of High-Dimensional Free Energy Models in Molecular Coarse Graining

We present a differentiable formalism for learning free energies that is capable of capturing arbitrarily complex model dependencies on coarse-grained coordinates and finite-temperature response to variation of general system parameters. This is done by endowing models with explicit dependence on temperature and parameters and by exploiting exact differential thermodynamic relationships between the free energy, ensemble averages, and response properties. Formally, we derive an approach for learning high-dimensional cumulant generating functions using statistical estimates of their derivatives, which are observable cumulants of the underlying random variable. The proposed formalism opens ways to resolve several outstanding challenges in bottom-up molecular coarse graining dealing with multiple minima and state dependence. This is realized by using additional differential relationships in the loss function to significantly improve the learning of free energies, while exactly preserving the Boltzmann distribution governing the corresponding fine-grain all-atom system. As an example, we go beyond the standard force-matching procedure to demonstrate how leveraging the thermodynamic relationship between free energy and values of ensemble averaged all-atom potential energy improves the learning efficiency and accuracy of the free energy model. The result is significantly better sampling statistics of structural distribution functions. The theoretical framework presented here is demonstrated via implementations in both kernel-based and neural network machine learning regression methods and opens new ways to train accurate machine learning models for studying thermodynamic and response properties of complex molecular systems.

physics.comp-ph↗

arXiv2024

Addressing the Band Gap Problem with a Machine-Learned Exchange Functional

The systematic underestimation of band gaps is one of the most fundamental challenges in semilocal density functional theory (DFT). In addition to hindering the application of DFT to predicting electronic properties, the band gap problem is intimately related to self-interaction and delocalization errors, which make the study of charge transfer mechanisms with DFT difficult. In this work, we present two key innovations to address the band gap problem. First, we design an approach for machine learning density functionals based on Gaussian processes to explicitly fit single-particle energy levels. Second, we introduce novel nonlocal features of the density matrix that are expressive enough to fit these single-particle levels. Combining these developments, we train a machine-learned functional for the exact exchange energy that predicts molecular energy gaps and reaction energies of a wide range of molecules in excellent agreement with reference hybrid DFT calculations. In addition, while being trained solely on molecular data, our model predicts reasonable formation energies of polarons in solids, showcasing its transferability and robustness. Our approach generalizes straightforwardly to full exchange-correlation functionals, thus paving the way to the design of novel state-of-the-art functionals for the prediction of electronic properties of molecules and materials.

physics.chem-ph↗

arXiv2024

Alternate cleavage structure and electronic inhomogeneity in Ca-doped YBa$_2$Cu$_3$O$_{7-δ}$

YBa$_2$Cu$_3$O$_{7-δ}$ (YBCO) has favorable macroscopic superconducting properties of $T_\mathrm{c}$ up to 93 K and $H_{c2}$ up to 150 T. However, its nanoscale electronic structure remains mysterious because bulk-like electronic properties are not preserved near the surface of cleaved samples for easy access by local or surface-sensitive probes. It has been hypothesized that Ca-doping at the Y site could induce an alternate cleavage plane that mitigates this issue. We use scanning tunneling microscopy (STM) to study both Ca-free and 10% Ca-doped YBCO, and find that the Ca-doped samples do indeed cleave on an alternate plane, yielding a spatially-disordered partial (Y,Ca) layer. Our density functional theory calculations support the increased likelihood of this new cleavage plane in Ca-doped YBCO. On this surface, we image a superconducting gap with average value 24 $\pm$ 3 meV and characteristic length scale 1-2 nm, similar to Bi-based high-$T_\mathrm{c}$ cuprates, but the first map of gap inhomogeneity in the YBCO family.

cond-mat.supr-con↗

arXiv2024

Phase discovery with active learning: Application to structural phase transitions in equiatomic NiTi

Nickel titanium (NiTi) is a protypical shape-memory alloy used in a range of biomedical and engineering devices, but direct molecular dynamics simulations of the martensitic B19' -> B2 phase transition driving its shape-memory behavior are rare and have relied on classical force fields with limited accuracy. Here, we train four machine-learned force fields for equiatomic NiTi based on the LDA, PBE, PBEsol, and SCAN DFT functionals. The models are trained on the fly during NPT molecular dynamics, with DFT calculations and model updates performed automatically whenever the uncertainty of a local energy prediction exceeds a chosen threshold. The models achieve accuracies of 1-2 meV/atom during training and are shown to closely track DFT predictions of B2 and B19' elastic constants and phonon frequencies. Surprisingly, in large-scale molecular dynamics simulations, only the SCAN model predicts a reversible B19' -> B2 phase transition, with the LDA, PBE, and PBEsol models predicting a reversible transition to a previously uncharacterized low-volume phase, which we hypothesize to be a new stable high-pressure phase. We examine the structure of the new phase and estimate its stability on the temperature-pressure phase diagram. This work establishes an automated active learning protocol for studying displacive transformations, reveals important differences between DFT functionals that can only be detected in large-scale simulations, provides an accurate force field for NiTi, and identifies a new phase.

cond-mat.mtrl-sci↗

arXiv2024

Unbiased Atomistic Predictions of Crystal Dislocation Dynamics using Bayesian Force Fields

Crystal dislocation dynamics, especially at high temperatures, represents a subject where experimental phenomenological input is commonly required, and parameter-free predictions, starting from quantum methods, have been beyond reach. This is especially true for phenomena like stacking faults and dislocation cross-slip, which are computationally intractable with methods like density functional theory, as $\sim 10^5-10^6$ atoms are required to reliably simulate such systems. Hence, this work extends quantum-mechanical accuracy to mesoscopic molecular dynamics simulations and opens unprecedented possibilities in material design for extreme mechanical conditions with direct atomistic insight at the deformation mesoscale. To accomplish this, we construct a Bayesian machine-learned force field (MLFF) from ab initio quantum training data, enabling direct observations of high-temperature and high-stress dislocation dynamics in single-crystalline Cu with atomistic resolution. In doing so, a generalizable training protocol is developed for construction of MLFFs for dislocation kinetics, with wide-ranging applicability to other single element systems and alloys. The resulting FLARE MLFF provides excellent predictions of static bulk elastic properties, stacking fault widths and energies, dynamic evolutions and mobilities of edge and screw dislocations, as well as cross-slip energy barriers for screw dislocations, all of which are compared to available experimental measurements. This work marks the first reliable quantitative determination of dislocation mobilities and cross-slip barriers, demonstrating a substantial advancement over previous empirical and machine learned force field models.

cond-mat.mtrl-sci↗

arXiv2023

Towards Sustainable Ultrawide Bandgap Van der Waals Materials: An ab initio Screening Effort

The sustainable development of next-generation device technology is paramount in the face of climate change and the looming energy crisis. Tremendous efforts have been made in the discovery and design of nanomaterials that achieve device-level sustainability, where high performance and low operational energy cost are prioritized. However, many of such materials are composed of elements that are under threat of depletion and pose elevated risks to the environment. The role of material-level sustainability in computational screening efforts remains an open question thus far. Here we develop a general van der Waals materials screening framework imbued with sustainability-motivated search criteria. Using ultrawide bandgap (UWBG) materials as a backdrop -- an emerging materials class with great prospects in dielectric, power electronics, and ultraviolet device applications, we demonstrate how this screening framework results in 25 sustainable UWBG layered materials comprising only of low-risks elements. Our findings constitute a critical first-step towards reinventing a more sustainable electronics landscape beyond silicon, with the framework established in this work serving as a harbinger of sustainable 2D materials discovery.

cond-mat.mtrl-sci↗

arXiv2023

Learning Interatomic Potentials at Multiple Scales

The need to use a short time step is a key limit on the speed of molecular dynamics (MD) simulations. Simulations governed by classical potentials are often accelerated by using a multiple-time-step (MTS) integrator that evaluates certain potential energy terms that vary more slowly than others less frequently. This approach is enabled by the simple but limiting analytic forms of classical potentials. Machine learning interatomic potentials (MLIPs), in particular recent equivariant neural networks, are much more broadly applicable than classical potentials and can faithfully reproduce the expensive but accurate reference electronic structure calculations used to train them. They still, however, require the use of a single short time step, as they lack the inherent term-by-term scale separation of classical potentials. This work introduces a method to learn a scale separation in complex interatomic interactions by co-training two MLIPs. Initially, a small and efficient model is trained to reproduce short-time-scale interactions. Subsequently, a large and expressive model is trained jointly to capture the remaining interactions not captured by the small model. When running MD, the MTS integrator then evaluates the smaller model for every time step and the larger model less frequently, accelerating simulation. Compared to a conventionally trained MLIP, our approach can achieve a significant speedup (~3x in our experiments) without a loss of accuracy on the potential energy or simulation-derived quantities.

physics.chem-ph↗

arXiv2023

Complexity of Many-Body Interactions in Transition Metals via Machine-Learned Force Fields from the TM23 Data Set

This work examines challenges associated with the accuracy of machine-learned force fields (MLFFs) for bulk solid and liquid phases of d-block elements. In exhaustive detail, we contrast the performance of force, energy, and stress predictions across the transition metals for two leading MLFF models: a kernel-based atomic cluster expansion method implemented using sparse Gaussian processes (FLARE), and an equivariant message-passing neural network (NequIP). Early transition metals present higher relative errors and are more difficult to learn relative to late platinum- and coinage-group elements, and this trend persists across model architectures. Trends in complexity of interatomic interactions for different metals are revealed via comparison of the performance of representations with different many-body order and angular resolution. Using arguments based on perturbation theory on the occupied and unoccupied d states near the Fermi level, we determine that the large, sharp d density of states both above and below the Fermi level in early transition metals leads to a more complex, harder-to-learn potential energy surface for these metals. Increasing the fictitious electronic temperature (smearing) modifies the angular sensitivity of forces and makes the early transition metal forces easier to learn. This work illustrates challenges in capturing intricate properties of metallic bonding with current leading MLFFs and provides a reference data set for transition metals, aimed at benchmarking the accuracy and improving the development of emerging machine-learned approximations.

cond-mat.mtrl-sci↗