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Bowen Chen

Publications and source records attributed to Bowen Chen.

At least 73 records · Page 4Linked to original sources

Multimodal Whole Slide Foundation Model for Pathology

The field of computational pathology has been transformed with recent advances in foundation models that encode histopathology region-of-interests (ROIs) into versatile and transferable feature representations via self-supervised learning (SSL). However, translating these advancements to address complex clinical challenges at the patient and slide level remains constrained by limited clinical data in disease-specific cohorts, especially for rare clinical conditions. We propose TITAN, a multimodal whole slide foundation model pretrained using 335,645 WSIs via visual self-supervised learning and vision-language alignment with corresponding pathology reports and 423,122 synthetic captions generated from a multimodal generative AI copilot for pathology. Without any finetuning or requiring clinical labels, TITAN can extract general-purpose slide representations and generate pathology reports that generalize to resource-limited clinical scenarios such as rare disease retrieval and cancer prognosis. We evaluate TITAN on diverse clinical tasks and find that TITAN outperforms both ROI and slide foundation models across machine learning settings such as linear probing, few-shot and zero-shot classification, rare cancer retrieval and cross-modal retrieval, and pathology report generation.

eess.IV↗

Thermal Pseudo-Entropy

In this work, we develop a generalisation of the thermal entropy to complex inverse temperatures, which we call the thermal pseudo-entropy. We show that this quantity represents the pseudo-entropy of the transition matrix between Thermofield Double states at different times. We have studied its properties in various quantum mechanical setups, Schwarzian theory, Random Matrix Theories, and 2D CFTs, including symmetric orbifolds. Our findings indicate a close relationship between the averaged thermal pseudo-entropy and the spectral form factor, which is instrumental in distinguishing chaotic and integrable models. Moreover, we have observed a logarithmic scaling of this quantity in models with a continuous spectrum, with a universal coefficient that is sensitive to the scaling of the density of states near the edge of the spectrum. Lastly, we found the connection between the real and imaginary parts of the thermal pseudo-entropy through the Kramers-Kronig relations.

hep-th↗

Spread Complexity Rate as Proper Momentum

We demonstrate a precise relation between the rate of complexity of quantum states excited by local operators in two-dimensional conformal field theories and the radial momentum of particles in 3-dimensional Anti-de Sitter spacetimes. Similar relations have been anticipated based on qualitative models for operator growth. Here, we make this correspondence sharp with two key ingredients: the precise definition of quantum complexity given by the spread complexity of states, and the match of its growth rate to the bulk momentum measured in the proper radial distance coordinate.

hep-th↗

A hybrid single quantum dot coupled cavity on a CMOS-compatible SiC photonic chip for Purcell-enhanced deterministic single-photon emission

The ability to control nonclassical light emission from a single quantum emitter by an integrated cavity may unleash new perspectives for integrated photonic quantum applications. However, coupling a single quantum emitter to cavity within photonic circuitry towards creation of the Purcell-enhanced single-photon emission is elusive due to the complexity of integrating active devices in low-loss photonic circuits. Here we demonstrate a hybrid micro-ring resonator (HMRR) coupled with self-assembled quantum dots (QDs) for cavity-enhanced deterministic single-photon emission. The HMRR cavity supports whispering-gallery modes with quality factors up to 7800. By further introducing a micro-heater, we show that the photon emission of QDs can be locally and dynamically tuned over one free spectral ranges of the HMRR (~4 nm). This allows precise tuning of individual QDs in resonance with the cavity modes, thereby enhancing single-photon emission with a Purcell factor of about 4.9. Our results on the hybrid integrated cavities coupled with two-level quantum emitters emerge as promising devices for chip-based scalable photonic quantum applications.

quant-ph↗

Satellite Streaming Video QoE Prediction: A Real-World Subjective Database and Network-Level Prediction Models

Demand for streaming services, including satellite, continues to exhibit unprecedented growth. Internet Service Providers find themselves at the crossroads of technological advancements and rising customer expectations. To stay relevant and competitive, these ISPs must ensure their networks deliver optimal video streaming quality, a key determinant of user satisfaction. Towards this end, it is important to have accurate Quality of Experience prediction models in place. However, achieving robust performance by these models requires extensive data sets labeled by subjective opinion scores on videos impaired by diverse playback disruptions. To bridge this data gap, we introduce the LIVE-Viasat Real-World Satellite QoE Database. This database consists of 179 videos recorded from real-world streaming services affected by various authentic distortion patterns. We also conducted a comprehensive subjective study involving 54 participants, who contributed both continuous-time opinion scores and endpoint (retrospective) QoE scores. Our analysis sheds light on various determinants influencing subjective QoE, such as stall events, spatial resolutions, bitrate, and certain network parameters. We demonstrate the usefulness of this unique new resource by evaluating the efficacy of prevalent QoE-prediction models on it. We also created a new model that maps the network parameters to predicted human perception scores, which can be used by ISPs to optimize the video streaming quality of their networks. Our proposed model, which we call SatQA, is able to accurately predict QoE using only network parameters, without any access to pixel data or video-specific metadata, estimated by Spearman's Rank Order Correlation Coefficient (SROCC), Pearson Linear Correlation Coefficient (PLCC), and Root Mean Squared Error (RMSE), indicating high accuracy and reliability.

cs.CV↗

Language-Assisted Human Part Motion Learning for Skeleton-Based Temporal Action Segmentation

Skeleton-based Temporal Action Segmentation involves the dense action classification of variable-length skeleton sequences. Current approaches primarily apply graph-based networks to extract framewise, whole-body-level motion representations, and use one-hot encoded labels for model optimization. However, whole-body motion representations do not capture fine-grained part-level motion representations and the one-hot encoded labels neglect the intrinsic semantic relationships within the language-based action definitions. To address these limitations, we propose a novel method named Language-assisted Human Part Motion Representation Learning (LPL), which contains a Disentangled Part Motion Encoder (DPE) to extract dual-level (i.e., part and whole-body) motion representations and a Language-assisted Distribution Alignment (LDA) strategy for optimizing spatial relations within representations. Specifically, after part-aware skeleton encoding via DPE, LDA generates dual-level action descriptions to construct a textual embedding space with the help of a large-scale language model. Then, LDA motivates the alignment of the embedding space between text descriptions and motions. This alignment allows LDA not only to enhance intra-class compactness but also to transfer the language-encoded semantic correlations among actions to skeleton-based motion learning. Moreover, we propose a simple yet efficient Semantic Offset Adapter to smooth the cross-domain misalignment. Our experiments indicate that LPL achieves state-of-the-art performance across various datasets (e.g., +4.4\% Accuracy, +5.6\% F1 on the PKU-MMD dataset). Moreover, LDA is compatible with existing methods and improves their performance (e.g., +4.8\% Accuracy, +4.3\% F1 on the LARa dataset) without additional inference costs.

cs.CV↗

A Multi-Perspective Analysis of Memorization in Large Language Models

Large Language Models (LLMs), trained on massive corpora with billions of parameters, show unprecedented performance in various fields. Though surprised by their excellent performances, researchers also noticed some special behaviors of those LLMs. One of those behaviors is memorization, in which LLMs can generate the same content used to train them. Though previous research has discussed memorization, the memorization of LLMs still lacks explanation, especially the cause of memorization and the dynamics of generating them. In this research, we comprehensively discussed memorization from various perspectives and extended the discussion scope to not only just the memorized content but also less and unmemorized content. Through various studies, we found that: (1) Through experiments, we revealed the relation of memorization between model size, continuation size, and context size. Further, we showed how unmemorized sentences transition to memorized sentences. (2) Through embedding analysis, we showed the distribution and decoding dynamics across model size in embedding space for sentences with different memorization scores. The n-gram statistics analysis presents d (3) An analysis over n-gram and entropy decoding dynamics discovered a boundary effect when the model starts to generate memorized sentences or unmemorized sentences. (4)We trained a Transformer model to predict the memorization of different models, showing that it is possible to predict memorizations by context.

cs.CL↗

Joint Radar Sensing, Location, and Communication Resources Optimization in 6G Network

The possibility of jointly optimizing location sensing and communication resources, facilitated by the existence of communication and sensing spectrum sharing, is what promotes the system performance to a higher level. However, the rapid mobility of user equipment (UE) can result in inaccurate location estimation, which can severely degrade system performance. Therefore, the precise UE location sensing and resource allocation issues are investigated in a spectrum sharing sixth generation network. An approach is proposed for joint subcarrier and power optimization based on UE location sensing, aiming to minimize system energy consumption. The joint allocation process is separated into two key phases of operation. In the radar location sensing phase, the multipath interference and Doppler effects are considered simultaneously, and the issues of UE's location and channel state estimation are transformed into a convex optimization problem, which is then solved through gradient descent. In the communication phase, a subcarrier allocation method based on subcarrier weights is proposed. To further minimize system energy consumption, a joint subcarrier and power allocation method is introduced, resolved via the Lagrange multiplier method for the non-convex resource allocation problem. Simulation analysis results indicate that the location sensing algorithm exhibits a prominent improvement in accuracy compared to benchmark algorithms. Simultaneously, the proposed resource allocation scheme also demonstrates a substantial enhancement in performance relative to baseline schemes.

eess.SY↗

RSCaMa: Remote Sensing Image Change Captioning with State Space Model

Remote Sensing Image Change Captioning (RSICC) aims to describe surface changes between multi-temporal remote sensing images in language, including the changed object categories, locations, and dynamics of changing objects (e.g., added or disappeared). This poses challenges to spatial and temporal modeling of bi-temporal features. Despite previous methods progressing in the spatial change perception, there are still weaknesses in joint spatial-temporal modeling. To address this, in this paper, we propose a novel RSCaMa model, which achieves efficient joint spatial-temporal modeling through multiple CaMa layers, enabling iterative refinement of bi-temporal features. To achieve efficient spatial modeling, we introduce the recently popular Mamba (a state space model) with a global receptive field and linear complexity into the RSICC task and propose the Spatial Difference-aware SSM (SD-SSM), overcoming limitations of previous CNN- and Transformer-based methods in the receptive field and computational complexity. SD-SSM enhances the model's ability to capture spatial changes sharply. In terms of efficient temporal modeling, considering the potential correlation between the temporal scanning characteristics of Mamba and the temporality of the RSICC, we propose the Temporal-Traversing SSM (TT-SSM), which scans bi-temporal features in a temporal cross-wise manner, enhancing the model's temporal understanding and information interaction. Experiments validate the effectiveness of the efficient joint spatial-temporal modeling and demonstrate the outstanding performance of RSCaMa and the potential of the Mamba in the RSICC task. Additionally, we systematically compare three different language decoders, including Mamba, GPT-style decoder, and Transformer decoder, providing valuable insights for future RSICC research. The code will be available at \emph{\url{https://github.com/Chen-Yang-Liu/RSCaMa}}

cs.CV↗

Sign-reversal Anomalous Hall effect driven by a magnetic transition in Cr$_{7-δ}$Te$_8$

The search for exotic spin configurations and related novel transport properties continues to be fueled by the promise of new electronic states and outstanding candidate components for spintronic applications. In layered Cr$_{7-δ}$Te$_8$, the applied field drives a before unreported magnetic transition revealed by the alternating current magnetic susceptibility measurements around room temperature. This observed magnetic transition results in a sign change for the anomalous Hall effect which exhibits non-monotonous temperature dependence. The prominent topological Hall effect (THE) with a large value of 1$μΩ\cdot cm$ has been observed without breaking the inversion symmetry for Cr$_{7-δ}$Te$_8$. This robust THE can persist up to room temperature attributed to the nonzero fluctuation-driven scalar spin chirality. The complicated interactions of long-range and short-range magnetic orders lead to rich exotic magnetic states with related novel transport properties in Cr$_{7-δ}$Te$_8$.

cond-mat.mtrl-sci↗

RSMamba: Remote Sensing Image Classification with State Space Model

Remote sensing image classification forms the foundation of various understanding tasks, serving a crucial function in remote sensing image interpretation. The recent advancements of Convolutional Neural Networks (CNNs) and Transformers have markedly enhanced classification accuracy. Nonetheless, remote sensing scene classification remains a significant challenge, especially given the complexity and diversity of remote sensing scenarios and the variability of spatiotemporal resolutions. The capacity for whole-image understanding can provide more precise semantic cues for scene discrimination. In this paper, we introduce RSMamba, a novel architecture for remote sensing image classification. RSMamba is based on the State Space Model (SSM) and incorporates an efficient, hardware-aware design known as the Mamba. It integrates the advantages of both a global receptive field and linear modeling complexity. To overcome the limitation of the vanilla Mamba, which can only model causal sequences and is not adaptable to two-dimensional image data, we propose a dynamic multi-path activation mechanism to augment Mamba's capacity to model non-causal data. Notably, RSMamba maintains the inherent modeling mechanism of the vanilla Mamba, yet exhibits superior performance across multiple remote sensing image classification datasets. This indicates that RSMamba holds significant potential to function as the backbone of future visual foundation models. The code will be available at \url{https://github.com/KyanChen/RSMamba}.

cs.CV↗

A Foundational Multimodal Vision Language AI Assistant for Human Pathology

The field of computational pathology has witnessed remarkable progress in the development of both task-specific predictive models and task-agnostic self-supervised vision encoders. However, despite the explosive growth of generative artificial intelligence (AI), there has been limited study on building general purpose, multimodal AI assistants tailored to pathology. Here we present PathChat, a vision-language generalist AI assistant for human pathology using an in-house developed foundational vision encoder pretrained on 100 million histology images from over 100,000 patient cases and 1.18 million pathology image-caption pairs. The vision encoder is then combined with a pretrained large language model and the whole system is finetuned on over 250,000 diverse disease agnostic visual language instructions. We compare PathChat against several multimodal vision language AI assistants as well as GPT4V, which powers the commercially available multimodal general purpose AI assistant ChatGPT-4. When relevant clinical context is provided with the histology image, PathChat achieved a diagnostic accuracy of 87% on multiple-choice questions based on publicly available cases of diverse tissue origins and disease models. Additionally, using open-ended questions and human expert evaluation, we found that overall PathChat produced more accurate and pathologist-preferable responses to diverse queries related to pathology. As an interactive and general vision language AI assistant that can flexibly handle both visual and natural language inputs, PathChat can potentially find impactful applications in pathology education, research, and human-in-the-loop clinical decision making.

cs.CV↗

Extended Kohler's Rule of Magnetoresistance in TaCo$_2$Te$_2$

TaCo$_2$Te$_2$ is recently reported to be an air-stable, high mobility Van der Waals material with probable magnetic order. Here we investigate the scaling behavior of its magnetoresistance. We measured both the longitudinal ($ρ_{xx}$) and Hall ($ρ_{xy}$) magnetoresistivities of TaCo$_2$Te$_2$ crystals in magnetic fields parallel to the c-axis and found that the magnetoresistance violates the Kohler's rule $MR \sim f[H/ρ_0]$ while obeying the extended Kohler's rule $MR \sim f[H/(n_Tρ_0)]$, where $MR \sim [ρ_{xx}(H)-ρ_0]/ρ_0$, $H$ is the magnetic field, $n_T$ is a thermal factor, $ρ_{xx}(H)$ and $ρ_0$ are the resistivities at $H$ and zero field, respectively. While deviating from those of the densities of electrons ($n_e$) and holes ($n_h$) obtained from the two-band model analysis of the magnetoconductivities, the temperature dependence of $n_T$ is close to that of the Hall carrier densities $n_H$ calculated from the slopes of $ρ_{xy}(H)$ curves at low magnetic fields, providing a new way to obtain the thermal factor in the extended Kohler's rule.

cond-mat.mtrl-sci↗

A General-Purpose Self-Supervised Model for Computational Pathology

Tissue phenotyping is a fundamental computational pathology (CPath) task in learning objective characterizations of histopathologic biomarkers in anatomic pathology. However, whole-slide imaging (WSI) poses a complex computer vision problem in which the large-scale image resolutions of WSIs and the enormous diversity of morphological phenotypes preclude large-scale data annotation. Current efforts have proposed using pretrained image encoders with either transfer learning from natural image datasets or self-supervised pretraining on publicly-available histopathology datasets, but have not been extensively developed and evaluated across diverse tissue types at scale. We introduce UNI, a general-purpose self-supervised model for pathology, pretrained using over 100 million tissue patches from over 100,000 diagnostic haematoxylin and eosin-stained WSIs across 20 major tissue types, and evaluated on 33 representative CPath clinical tasks in CPath of varying diagnostic difficulties. In addition to outperforming previous state-of-the-art models, we demonstrate new modeling capabilities in CPath such as resolution-agnostic tissue classification, slide classification using few-shot class prototypes, and disease subtyping generalization in classifying up to 108 cancer types in the OncoTree code classification system. UNI advances unsupervised representation learning at scale in CPath in terms of both pretraining data and downstream evaluation, enabling data-efficient AI models that can generalize and transfer to a gamut of diagnostically-challenging tasks and clinical workflows in anatomic pathology.

cs.CV↗

AvatarVerse: High-quality & Stable 3D Avatar Creation from Text and Pose

Creating expressive, diverse and high-quality 3D avatars from highly customized text descriptions and pose guidance is a challenging task, due to the intricacy of modeling and texturing in 3D that ensure details and various styles (realistic, fictional, etc). We present AvatarVerse, a stable pipeline for generating expressive high-quality 3D avatars from nothing but text descriptions and pose guidance. In specific, we introduce a 2D diffusion model conditioned on DensePose signal to establish 3D pose control of avatars through 2D images, which enhances view consistency from partially observed scenarios. It addresses the infamous Janus Problem and significantly stablizes the generation process. Moreover, we propose a progressive high-resolution 3D synthesis strategy, which obtains substantial improvement over the quality of the created 3D avatars. To this end, the proposed AvatarVerse pipeline achieves zero-shot 3D modeling of 3D avatars that are not only more expressive, but also in higher quality and fidelity than previous works. Rigorous qualitative evaluations and user studies showcase AvatarVerse's superiority in synthesizing high-fidelity 3D avatars, leading to a new standard in high-quality and stable 3D avatar creation. Our project page is: https://avatarverse3d.github.io

cs.CV↗

Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples

Human tissue and its constituent cells form a microenvironment that is fundamentally three-dimensional (3D). However, the standard-of-care in pathologic diagnosis involves selecting a few two-dimensional (2D) sections for microscopic evaluation, risking sampling bias and misdiagnosis. Diverse methods for capturing 3D tissue morphologies have been developed, but they have yet had little translation to clinical practice; manual and computational evaluations of such large 3D data have so far been impractical and/or unable to provide patient-level clinical insights. Here we present Modality-Agnostic Multiple instance learning for volumetric Block Analysis (MAMBA), a deep-learning-based platform for processing 3D tissue images from diverse imaging modalities and predicting patient outcomes. Archived prostate cancer specimens were imaged with open-top light-sheet microscopy or microcomputed tomography and the resulting 3D datasets were used to train risk-stratification networks based on 5-year biochemical recurrence outcomes via MAMBA. With the 3D block-based approach, MAMBA achieves an area under the receiver operating characteristic curve (AUC) of 0.86 and 0.74, superior to 2D traditional single-slice-based prognostication (AUC of 0.79 and 0.57), suggesting superior prognostication with 3D morphological features. Further analyses reveal that the incorporation of greater tissue volume improves prognostic performance and mitigates risk prediction variability from sampling bias, suggesting the value of capturing larger extents of heterogeneous 3D morphology. With the rapid growth and adoption of 3D spatial biology and pathology techniques by researchers and clinicians, MAMBA provides a general and efficient framework for 3D weakly supervised learning for clinical decision support and can help to reveal novel 3D morphological biomarkers for prognosis and therapeutic response.

eess.IV↗

Towards a Visual-Language Foundation Model for Computational Pathology

The accelerated adoption of digital pathology and advances in deep learning have enabled the development of powerful models for various pathology tasks across a diverse array of diseases and patient cohorts. However, model training is often difficult due to label scarcity in the medical domain and the model's usage is limited by the specific task and disease for which it is trained. Additionally, most models in histopathology leverage only image data, a stark contrast to how humans teach each other and reason about histopathologic entities. We introduce CONtrastive learning from Captions for Histopathology (CONCH), a visual-language foundation model developed using diverse sources of histopathology images, biomedical text, and notably over 1.17 million image-caption pairs via task-agnostic pretraining. Evaluated on a suite of 13 diverse benchmarks, CONCH can be transferred to a wide range of downstream tasks involving either or both histopathology images and text, achieving state-of-the-art performance on histology image classification, segmentation, captioning, text-to-image and image-to-text retrieval. CONCH represents a substantial leap over concurrent visual-language pretrained systems for histopathology, with the potential to directly facilitate a wide array of machine learning-based workflows requiring minimal or no further supervised fine-tuning.

cs.CV↗

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images

Contrastive visual language pretraining has emerged as a powerful method for either training new language-aware image encoders or augmenting existing pretrained models with zero-shot visual recognition capabilities. However, existing works typically train on large datasets of image-text pairs and have been designed to perform downstream tasks involving only small to medium sized-images, neither of which are applicable to the emerging field of computational pathology where there are limited publicly available paired image-text datasets and each image can span up to 100,000 x 100,000 pixels. In this paper we present MI-Zero, a simple and intuitive framework for unleashing the zero-shot transfer capabilities of contrastively aligned image and text models on gigapixel histopathology whole slide images, enabling multiple downstream diagnostic tasks to be carried out by pretrained encoders without requiring any additional labels. MI-Zero reformulates zero-shot transfer under the framework of multiple instance learning to overcome the computational challenge of inference on extremely large images. We used over 550k pathology reports and other available in-domain text corpora to pre-train our text encoder. By effectively leveraging strong pre-trained encoders, our best model pretrained on over 33k histopathology image-caption pairs achieves an average median zero-shot accuracy of 70.2% across three different real-world cancer subtyping tasks. Our code is available at: https://github.com/mahmoodlab/MI-Zero.

cs.CV↗