arXiv subjects

Boyuan Zhang

Publications and source records attributed to Boyuan Zhang.

At least 37 records · Page 2Linked to original sources

arXiv2025

A Survey on Error-Bounded Lossy Compression for Scientific Datasets

Error-bounded lossy compression has been effective in significantly reducing the data storage/transfer burden while preserving the reconstructed data fidelity very well. Many error-bounded lossy compressors have been developed for a wide range of parallel and distributed use cases for years. They are designed with distinct compression models and principles, such that each of them features particular pros and cons. In this paper we provide a comprehensive survey of emerging error-bounded lossy compression techniques. The key contribution is fourfold. (1) We summarize a novel taxonomy of lossy compression into 6 classic models. (2) We provide a comprehensive survey of 10 commonly used compression components/modules. (3) We summarized pros and cons of 46 state-of-the-art lossy compressors and present how state-of-the-art compressors are designed based on different compression techniques. (4) We discuss how customized compressors are designed for specific scientific applications and use-cases. We believe this survey is useful to multiple communities including scientific applications, high-performance computing, lossy compression, and big data.

cs.DC↗

arXiv2025

Treatment response as a latent variable

Scientists often need to analyze the samples in a study that responded to treatment in order to refine their hypotheses and find potential causal drivers of response. Natural variation in outcomes makes teasing apart responders from non-responders a statistical inference problem. To handle latent responses, we introduce the causal two-groups (C2G) model, a causal extension of the classical two-groups model. The C2G model posits that treated samples may or may not experience an effect, according to some prior probability. We propose two empirical Bayes procedures for the causal two-groups model, one under semi-parametric conditions and another under fully nonparametric conditions. The semi-parametric model assumes additive treatment effects and is identifiable from observed data. The nonparametric model is unidentifiable, but we show it can still be used to test for response in each treated sample. We show empirically and theoretically that both methods for selecting responders control the false discovery rate at the target level with near-optimal power. We also propose two novel estimands of interest and provide a strategy for deriving estimand intervals in the unidentifiable nonparametric model. On a cancer immunotherapy dataset, the nonparametric C2G model recovers clinically-validated predictive biomarkers of both positive and negative outcomes. Code is available at https://github.com/tansey-lab/causal2groups.

stat.ME↗

arXiv2025

Complete minimal hypersurfaces in $\mathbb H^5$ with constant scalar curvature and zero Gauss-Kronecker curvature

We show that any complete minimal hypersurface in the five-dimensional hyperbolic space $\mathbb H^5$, endowed with constant scalar curvature and vanishing Gauss-Kronecker curvature, must be totally geodesic. Cheng-Peng [3] recently conjecture that any complete minimal hypersurface with constant scalar curvature in $\mathbb H^4$ is totally geodesic. Our result partially confirms this conjecture in five dimensional setting.

math.DG↗

arXiv2025

Extract neutron-neutron interaction strength and spatial-temporal dynamics of neutron emission from two-particle correlation function

The neutron-neutron ($nn$) correlation function has been measured in 25 MeV/u $^{124}$Sn+$^{124}$Sn reactions. Using the Lednický-Lyuboshitz approach, the $nn$ scattering length and effective range ($f_{0}^{nn}$, $d_{0}^{nn}$), as well as the reduced space-time size $R^{(0)}$ of the neutron emission source are simultaneously extracted as ($18.9^{+1.3}_{-1.2}$ fm, $1.9^{+1.3}_{-1.0}$ fm) and $4.12 \pm 0.12$ fm, respectively. The measured $nn$ scattering length is consistent with the results obtained in the low-energy scattering $^{2}{\rm H}(π^{-},γ)2n$, indicating heavy-ion collisions can serve as an effective approach for measuring $nn$ interactions and further investigating the charge symmetry breaking of nuclear force. The space-time size extracted from momentum-gated correlation functions exhibits clear dependence on the pair momentum, with $R^{(0)}=2.8 \pm 0.1 $ fm and $4.9 \pm 0.2$ fm being determined for the high and low momentum neutrons, respectively.

nucl-ex↗

arXiv2024

Overcoming Memory Constraints in Quantum Circuit Simulation with a High-Fidelity Compression Framework

Full-state quantum circuit simulation requires exponentially increased memory size to store the state vector as the number of qubits scales, presenting significant limitations in classical computing systems. Our paper introduces BMQSim, a novel state vector quantum simulation framework that employs lossy compression to address the memory constraints on graphics processing unit (GPU) machines. BMQSim effectively tackles four major challenges for state-vector simulation with compression: frequent compression/decompression, high memory movement overhead, lack of dedicated error control, and unpredictable memory space requirements. Our work proposes an innovative strategy of circuit partitioning to significantly reduce the frequency of compression occurrences. We introduce a pipeline that seamlessly integrates compression with data movement while concealing its overhead. Additionally, BMQSim incorporates the first GPU-based lossy compression technique with point-wise error control. Furthermore, BMQSim features a two-level memory management system, ensuring efficient and stable execution. Our evaluations demonstrate that BMQSim can simulate the same circuit with over 10 times less memory usage on average, achieving fidelity over 0.99 and maintaining comparable simulation time to other state-of-the-art simulators.

cs.DC↗

arXiv2024

cuSZ-$i$: High-Ratio Scientific Lossy Compression on GPUs with Optimized Multi-Level Interpolation

Error-bounded lossy compression is a critical technique for significantly reducing scientific data volumes. Compared to CPU-based compressors, GPU-based compressors exhibit substantially higher throughputs, fitting better for today's HPC applications. However, the critical limitations of existing GPU-based compressors are their low compression ratios and qualities, severely restricting their applicability. To overcome these, we introduce a new GPU-based error-bounded scientific lossy compressor named cuSZ-$i$, with the following contributions: (1) A novel GPU-optimized interpolation-based prediction method significantly improves the compression ratio and decompression data quality. (2) The Huffman encoding module in cuSZ-$i$ is optimized for better efficiency. (3) cuSZ-$i$ is the first to integrate the NVIDIA Bitcomp-lossless as an additional compression-ratio-enhancing module. Evaluations show that cuSZ-$i$ significantly outperforms other latest GPU-based lossy compressors in compression ratio under the same error bound (hence, the desired quality), showcasing a 476% advantage over the second-best. This leads to cuSZ-$i$'s optimized performance in several real-world use cases.

cs.DC↗

arXiv2024

Accelerating Communication in Deep Learning Recommendation Model Training with Dual-Level Adaptive Lossy Compression

DLRM is a state-of-the-art recommendation system model that has gained widespread adoption across various industry applications. The large size of DLRM models, however, necessitates the use of multiple devices/GPUs for efficient training. A significant bottleneck in this process is the time-consuming all-to-all communication required to collect embedding data from all devices. To mitigate this, we introduce a method that employs error-bounded lossy compression to reduce the communication data size and accelerate DLRM training. We develop a novel error-bounded lossy compression algorithm, informed by an in-depth analysis of embedding data features, to achieve high compression ratios. Moreover, we introduce a dual-level adaptive strategy for error-bound adjustment, spanning both table-wise and iteration-wise aspects, to balance the compression benefits with the potential impacts on accuracy. We further optimize our compressor for PyTorch tensors on GPUs, minimizing compression overhead. Evaluation shows that our method achieves a 1.38$\times$ training speedup with a minimal accuracy impact.

cs.LG↗

arXiv2024

Reconstruction of Bremsstrahlung $γ$-rays Spectrum in Heavy Ion Reactions with Richardson-Lucy Algorithm

The high momentum tail (HMT) in the momentum distribution of nucleons above the Fermi surface has been regarded as an evidence of short-range correlations (SRCs) in atomic nuclei. It has been showcased recently that the $np$ Bremsstrahlung radiation in heavy ion reactions can be used to extract HMT information. The Richardson-Lucy (RL) algorithm is introduced to the reconstruction of the original Bremsstrahlung $γ$-ray energy spectrum from experimental measurements. By solving the inverse problem of the detector response to the $γ$-rays, the original energy spectrum of the Bremsstrahlung $γ$ in 25 MeV/u $^{86}$Kr + $^{124}$Sn has been reconstructed and compared to the isospin- and momentum-dependent Boltzmann-Uehling-Uhlenbeck (IBUU) simulations. The analysis based on hypothesis test suggests the existence of the HMT of nucleons in nuclei, in accordance with the previous conclusions. With its effectiveness being demonstrated, it is feasible to apply the RL algorithm in future experiments of measuring the Bremsstrahlung $γ$-rays in heavy ion reactions.

nucl-th↗

arXiv2024

The neutron array of the compact spectrometer for heavy ion experiments in Fermi energy region

The emission of neutrons from heavy ion reactions is an important observable for studying the asymmetric nuclear equation of state and the reaction dynamics. A 20-unit neutron array has been developed and mounted on the compact spectrometer for heavy ion experiments (CSHINE) to measure the neutron spectra, neutron-neutron and neutron-proton correlation functions. Each unit consists of a $\rm 15\times 15\times 15~cm^3$ plastic scintillator coupled to a $ ϕ=52 ~\rm mm$ photomultiplier. The Geant4 simulation with optical process is performed to investigate the time resolution and the neutron detection efficiency. The inherent time resolution of 212 ps is obtained by cosmic ray coincidence test. The n-$γ$ discrimination and time-of-flight performance are given by $\rm ^{252}Cf$ radioactive source test and beam test. The neutron energy spectra have been obtained in the angle range $30^\circ \le θ_{\rm lab} \le 51^\circ$ in the beam experiment of $^{124}$Sn+$^{124}$Sn at 25 MeV/u with CSHINE.

physics.ins-det↗

arXiv2024

Bayesian Estimation of Panel Models under Potentially Sparse Heterogeneity

We incorporate a version of a spike and slab prior, comprising a pointmass at zero ("spike") and a Normal distribution around zero ("slab") into a dynamic panel data framework to model coefficient heterogeneity. In addition to homogeneity and full heterogeneity, our specification can also capture sparse heterogeneity, that is, there is a core group of units that share common parameters and a set of deviators with idiosyncratic parameters. We fit a model with unobserved components to income data from the Panel Study of Income Dynamics. We find evidence for sparse heterogeneity for balanced panels composed of individuals with long employment histories.

econ.EM↗

arXiv2023

Revisit to the yield ratio of triton and $^3$He as an indicator of neutron-rich neck emission

The neutron rich neck zone created in heavy ion reaction is experimentally probed by the production of the $A=3$ isobars. The energy spectra and angular distributions of triton and $^3$He are measured with the CSHINE detector in $^{86}$Kr +$^{208}$Pb reactions at 25 MeV/u. While the energy spectrum of $^{3}$He is harder than that of triton, known as "$^{3}$He-puzzle", the yield ratio $R({\rm t/^3He})$ presents a robust rising trend with the polar angle in laboratory. Using the fission fragments to reconstruct the fission plane, the enhancement of out-plane $R({\rm t/^3He})$ is confirmed in comparison to the in-plane ratios. Transport model simulations reproduce qualitatively the experimental trends, but the quantitative agreement is not achieved. The results demonstrate that a neutron rich neck zone is formed in the reactions. Further studies are called for to understand the clustering and the isospin dynamics related to neck formation.

nucl-ex↗

arXiv2023

Incorporating Prior Knowledge of Latent Group Structure in Panel Data Models

The assumption of group heterogeneity has become popular in panel data models. We develop a constrained Bayesian grouped estimator that exploits researchers' prior beliefs on groups in a form of pairwise constraints, indicating whether a pair of units is likely to belong to a same group or different groups. We propose a prior to incorporate the pairwise constraints with varying degrees of confidence. The whole framework is built on the nonparametric Bayesian method, which implicitly specifies a distribution over the group partitions, and so the posterior analysis takes the uncertainty of the latent group structure into account. Monte Carlo experiments reveal that adding prior knowledge yields more accurate estimates of coefficient and scores predictive gains over alternative estimators. We apply our method to two empirical applications. In a first application to forecasting U.S. CPI inflation, we illustrate that prior knowledge of groups improves density forecasts when the data is not entirely informative. A second application revisits the relationship between a country's income and its democratic transition; we identify heterogeneous income effects on democracy with five distinct groups over ninety countries.

econ.EM↗

arXiv2023

MEMQSim: Highly Memory-Efficient and Modularized Quantum State-Vector Simulation

In this extended abstract, we have introduced a highly memory-efficient state vector simulation of quantum circuits premised on data compression, harnessing the capabilities of both CPUs and GPUs. We have elucidated the inherent challenges in architecting this system, while concurrently proposing our tailored solutions. Moreover, we have delineated our preliminary implementation and deliberated upon the potential for integration with other GPU-oriented simulators. In forthcoming research, we aim to present a more comprehensive set of results, bolstering the assertion of the efficacy and performance of our approach.

quant-ph↗

arXiv2023

Probing high-momentum component in nucleon momentum distribution by neutron-proton bremsstrahlung γ-rays in heavy ion reactions

The high momentum tail (HMT) of nucleons, as a signature of the short-range correlations in nuclei, has been investigated by the high-energy bremsstrahlung $γ$ rays produced in $^{86}$Kr + $^{124}$Sn at 25 MeV/u. The energetic photons are measured by a CsI(Tl) hodoscope mounted on the spectrometer CSHINE. The energy spectrum above 30 MeV can be reproduced by the IBUU model calculations incorporating the photon production channel from $np$ process in which the HMTs of nucleons is considered. A non-zero HMT ratio of about $15\%$ is favored by the data. The effect of the capture channel $np \to dγ$ is demonstrated.

nucl-ex↗

arXiv2023

When Will Arctic Sea Ice Disappear? Projections of Area, Extent, Thickness, and Volume

Rapidly diminishing Arctic summer sea ice is a strong signal of the pace of global climate change. We provide point, interval, and density forecasts for four measures of Arctic sea ice: area, extent, thickness, and volume. Importantly, we enforce the joint constraint that these measures must simultaneously arrive at an ice-free Arctic. We apply this constrained joint forecast procedure to models relating sea ice to atmospheric carbon dioxide concentration and models relating sea ice directly to time. The resulting "carbon-trend" and "time-trend" projections are mutually consistent and predict a nearly ice-free summer Arctic Ocean by the mid-2030s with an 80% probability. Moreover, the carbon-trend projections show that global adoption of a lower carbon path would likely delay the arrival of a seasonally ice-free Arctic by only a few years.

econ.EM↗

arXiv2023

HybridCVLNet: A Hybrid CSI Feedback System and its Domain Adaptation

Deep Learning (DL)-based channel state information (CSI) feedback is a promising technique for the transmitter to accurately acquire the CSI of massive multiple-input multiple-output (MIMO) systems. As critical concerns about DL-based physical layer applications, the intra-domain generalizability affected by dataset bias and inter-domain robustness in data drift remain challenging. Therefore, we build on a Hybrid Complex-Valued Lightweight framework, namely the HybridCVLNet, capable of overcoming the dataset bias with regularized hybrid structure and codeword. Meanwhile, a corresponding transductive-based hybrid domain adaptation scheme is proposed to tackle the inter-domain data drift. The experiment verifies that HybridCVLNet achieves stable generalizability and performance gain over the state-of-the-art (SOTA) feedback schemes in an intra-domain heterogeneous dataset. In addition, its transductive-based hybrid domain adaptation scheme is more efficient and superior to the inductive-based transfer learning methods under two inter-domain online re-optimization settings.

eess.SP↗

arXiv2023

GPULZ: Optimizing LZSS Lossless Compression for Multi-byte Data on Modern GPUs

Today's graphics processing unit (GPU) applications produce vast volumes of data, which are challenging to store and transfer efficiently. Thus, data compression is becoming a critical technique to mitigate the storage burden and communication cost. LZSS is the core algorithm in many widely used compressors, such as Deflate. However, existing GPU-based LZSS compressors suffer from low throughput due to the sequential nature of the LZSS algorithm. Moreover, many GPU applications produce multi-byte data (e.g., int16/int32 index, floating-point numbers), while the current LZSS compression only takes single-byte data as input. To this end, in this work, we propose GPULZ, a highly efficient LZSS compression on modern GPUs for multi-byte data. The contribution of our work is fourfold: First, we perform an in-depth analysis of existing LZ compressors for GPUs and investigate their main issues. Then, we propose two main algorithm-level optimizations. Specifically, we (1) change prefix sum from one pass to two passes and fuse multiple kernels to reduce data movement between shared memory and global memory, and (2) optimize existing pattern-matching approach for multi-byte symbols to reduce computation complexity and explore longer repeated patterns. Third, we perform architectural performance optimizations, such as maximizing shared memory utilization by adapting data partitions to different GPU architectures. Finally, we evaluate GPULZ on six datasets of various types with NVIDIA A100 and A4000 GPUs. Results show that GPULZ achieves up to 272.1X speedup on A4000 and up to 1.4X higher compression ratio compared to state-of-the-art solutions.

cs.DC↗

arXiv2023

FZ-GPU: A Fast and High-Ratio Lossy Compressor for Scientific Computing Applications on GPUs

Today's large-scale scientific applications running on high-performance computing (HPC) systems generate vast data volumes. Thus, data compression is becoming a critical technique to mitigate the storage burden and data-movement cost. However, existing lossy compressors for scientific data cannot achieve a high compression ratio and throughput simultaneously, hindering their adoption in many applications requiring fast compression, such as in-memory compression. To this end, in this work, we develop a fast and high-ratio error-bounded lossy compressor on GPUs for scientific data (called FZ-GPU). Specifically, we first design a new compression pipeline that consists of fully parallelized quantization, bitshuffle, and our newly designed fast encoding. Then, we propose a series of deep architectural optimizations for each kernel in the pipeline to take full advantage of CUDA architectures. We propose a warp-level optimization to avoid data conflicts for bit-wise operations in bitshuffle, maximize shared memory utilization, and eliminate unnecessary data movements by fusing different compression kernels. Finally, we evaluate FZ-GPU on two NVIDIA GPUs (i.e., A100 and RTX A4000) using six representative scientific datasets from SDRBench. Results on the A100 GPU show that FZ-GPU achieves an average speedup of 4.2X over cuSZ and an average speedup of 37.0X over a multi-threaded CPU implementation of our algorithm under the same error bound. FZ-GPU also achieves an average speedup of 2.3X and an average compression ratio improvement of 2.0X over cuZFP under the same data distortion.

cs.DC↗