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Brani Vidakovic

Publications and source records attributed to Brani Vidakovic.

At least 19 recordsLinked to original sources

Quaternion Nondecimated Wavelet Descriptors for Multiclass Breast Histology Classification

Breast histology images carry diagnostic information in color, texture, orientation, and tissue architecture across a range of scales. In H&E microscopy this information is inherently chromatic and is not fully recovered when the red, green, and blue (RGB) channels are reduced to grayscale or transformed as independent scalar images. We propose an interpretable quaternion nondecimated wavelet framework for breast histology classification. Each RGB image is encoded as a pure quaternion field, and a quaternion nondecimated wavelet transform in two dimensions (QNDWT2D) produces multiscale, directional, color-coupled coefficient fields on the original image grid, keeping color as a single vector quantity rather than three separate channels. From these coefficients we build interpretable feature families summarizing stain balance, wavelet energy, amplitude heterogeneity, quaternion phase concentration, color-axis geometry, directional anisotropy, orientation entropy, and scale-dependent energy decay, each tied to a histopathological property such as nuclear density or glandular organization. We evaluate the descriptors on the BreAst Cancer Histology (BACH) challenge, a balanced four-class set of normal, benign, in situ, and invasive tissue, using a radial-kernel support vector machine (SVM) with repeated nested cross-validation. The descriptors yield balanced recognition across classes, with errors concentrated among adjacent categories while normal and invasive are rarely reversed. Permutation importance shows that directional, phase-concentration, anisotropy, scale, and amplitude-variability groups all contribute, indicating that the classifier draws on genuine quaternion and multiscale geometry rather than global color alone. The framework uses no pretrained networks, learned filters, or external databases, offering a reproducible, interpretable baseline for computational pathology.

stat.AP

Masked complex non-decimated wavelet features for patient-level classification of contrast-enhanced mammography

Contrast-enhanced spectral mammography (CESM) acquires two images of each breast, a low-energy image and a recombined contrast image, but two questions central to building a classifier on them remain unsettled: whether the two image types carry comparable malignancy signal, and how a patient's several images should be combined into a single decision. Both are hard to answer reliably, because most published CESM classifiers split cross-validation folds at the image level, letting images of the same patient fall in both training and test sets and inflating reported performance. We pair a masked complex non-decimated wavelet feature bank with an elastic-net logistic classifier, evaluated under repeated patient-grouped nested cross-validation with patient-cluster bootstrap inference on the CDD-CESM dataset (1,880 images, 308 patients); under this leakage-free evaluation the inflation from testing on previously seen patients is negligible. On normal-versus-malignant detection, the two acquisitions are statistically indistinguishable in patient-level AUC under the proposed evaluation framework. Under single-image fusion the contrast image reaches a patient-level AUC of 0.874 (95% CI 0.827-0.918) and the low-energy image is statistically indistinguishable from it, yet the two encode malignancy through disjoint, interpretable channels: phase coherence on the low-energy image and magnitude distribution on the contrast image. The framework matches a pretrained ResNet-50 representation at the patient level, but whereas the frozen deep representation is not directly interpretable at the level of individual predictors, every predictor in the wavelet representation carries an explicit physical meaning. The result is a transparent, leakage-free baseline against which future CESM classifiers can be measured.

stat.AP

SCOPE Shrinkage: A Unified Framework for Wavelet Denoising

We introduce Symmetric CDF Oriented Probability Enhanced (SCOPE) shrinkage, a unified family of sign-preserving shrinkage rules constructed from centered cumulative distribution functions of symmetric unimodal distributions. The proposed framework generates a broad class of attenuation profiles that interpolate between strong local shrinkage near zero and asymptotically unbiased behavior in the tails. A general formulation is developed that separates scale and shape effects through two interpretable parameters, allowing effective threshold location and transition sharpness to be controlled independently. Under explicit regularity assumptions, structural properties of SCOPE shrinkage are established, including oddness, monotonicity, continuity, contractivity, and a mixture representation that connects the rules to softened thresholding operators. A Bayesian and penalized likelihood interpretation is also developed: SCOPE rules admit even penalty representations that are nondecreasing in coefficient magnitude, and suitable subclasses arise as exact maximum a posteriori estimators under proper symmetric unimodal priors. Representative examples based on logistic, uniform, and Cauchy distributions illustrate how probabilistic shape governs shrinkage behavior. Data driven parameter selection for smooth subclasses is discussed via Stein-type unbiased risk estimation. Oracle calibrated simulation studies on standard Donoho-Johnstone test functions show that SCOPE shrinkage performs competitively with several established wavelet denoising methods, while retaining a high degree of interpretability and structural flexibility. The results highlight centered distribution functions as a natural and versatile design principle for shrinkage in wavelet denoising and related estimation problems.

stat.ME

Machine Learning Integrated in Wavelet Shrinkage (MLShrink)

Data encountered in practice are frequently contaminated by additive noise, and wavelet shrinkage remains a fundamental tool for recovering underlying signals in nonparametric estimation. Classical procedures such as hard and soft thresholding decide whether to retain a wavelet coefficient almost entirely from its magnitude. Although effective in many settings, these rules can be too rigid for coefficients whose magnitudes fall in an intermediate region where the distinction between signal and noise is uncertain. We propose MLShrink, a two-threshold wavelet denoising procedure that combines wavelet shrinkage with machine learning. Coefficients below a lower threshold are discarded, coefficients above an upper threshold are retained, and coefficients in the intermediate band are classified using local wavelet-domain features. In this way, MLShrink preserves the simplicity of classical thresholding away from the decision boundary while allowing data-adaptive decisions for ambiguous coefficients. The paper also develops a theoretical framework tailored to this architecture. We show that MLShrink is a nonexpansive support-selection rule, derive an oracle-based risk decomposition showing that excess denoising risk is determined by classification errors on the undecided band, and establish an oracle-consistency result under suitable assumptions on classifier performance. Simulation experiments on standard benchmark signals indicate that MLShrink is competitive with several established wavelet shrinkage methods and is especially effective for signals with irregular, edge-rich, or non-smooth structure. These findings suggest that learned decisions on the intermediate threshold band provide a useful and interpretable connection between classical wavelet denoising and modern statistical learning.

stat.ME

Bayesian Inference for Incomplete 2x2 Diagnostic Tables

Incomplete reporting of diagnostic accuracy data remains a persistent problem in medical research. In many studies, only part of the 2x2 diagnostic table is reported, leaving denominators for diseased and non-diseased groups unknown and preventing direct calculation of sensitivity, specificity, predictive values, and related operating characteristics. To address this limitation, we develop hierarchical Bayesian models for reconstructing incomplete 2x2 diagnostic tables from such partial information. Two motivating scenarios are considered: one in which only a single test-outcome row is observed, and another in which true positives, false positives, and the total sample size are reported but the remaining cells are missing. The proposed models are illustrated on a benchmark breast MRI study with complete counts, treated as partially observed in order to assess reconstruction performance under controlled missingness. The framework yields posterior inference for the missing cell counts and associated diagnostic measures, together with uncertainty quantification in weakly identified settings.

stat.AP

Composite Wavelet Matrix-Based Transforms and Applications

Orthogonal wavelet transforms are a cornerstone of modern signal and image denoising because they combine multiscale representation, energy preservation, and perfect reconstruction. In this paper, we show that these advantages can be retained and enhanced by moving beyond classical single-basis wavelet filterbanks to a broader class of composite wavelet-like matrices. By combining orthogonal wavelet matrices through products, Kronecker products, and block-diagonal constructions, we obtain new unitary transforms that generally fall outside the strict wavelet filterbank class, yet remain fully invertible and numerically stable. The central finding is that such composite transforms often induce stronger concentration of signal energy into fewer coefficients than conventional wavelets. This increased sparsity, quantified using Lorenz curve diagnostics, directly translates into improved denoising under identical thresholding rules. Extensive simulations on Donoho-Johnstone benchmark signals, complex-valued unitary examples, and adaptive block constructions demonstrate consistent reductions in mean-squared error relative to single-basis transforms. Applications to atmospheric turbulence measurements and image denoising of the Barbara benchmark further confirm that composite transforms better preserve salient structures while suppressing noise.

stat.CO

Smooth SCAD: A Raised Cosine SCAD Type Thresholding Rule for Wavelet Denoising

We introduce a smooth variant of the SCAD thresholding rule for wavelet denoising by replacing its piecewise linear transition with a raised cosine. The resulting shrinkage function is odd, continuous on R, and continuously differentiable away from the main threshold, yet retains the hallmark SCAD properties of sparsity for small coefficients and near unbiasedness for large ones. This smoothness places the rule within the continuous thresholding class for which Stein's unbiased risk estimate is valid. As a result, unbiased risk computation, stable data-driven threshold selection, and the asymptotic theory of Kudryavtsev and Shestakov apply. A corresponding nonconvex prior is obtained whose posterior mode coincides with the estimator, yielding a transparent Bayesian interpretation. We give an explicit SURE risk expression, discuss the oracle scale of the optimal threshold, and describe both global and level-dependent adaptive versions. The smooth SCAD rule therefore offers a tractable refinement of SCAD, combining low bias, exact sparsity, and analytical convenience in a single wavelet shrinkage procedure.

stat.CO

Quantum Nondecimated Wavelet Transform: Theory, Circuits, and Applications

The nondecimated or translation-invariant wavelet transform (NDWT) is a central tool in classical multiscale signal analysis, valued for its stability, redundancy, and shift invariance. This paper develops two complementary quantum formulations of the NDWT that embed these classical properties coherently into quantum computation. The first formulation is based on the epsilon-decimated interpretation of the NDWT and realizes all circularly shifted wavelet transforms simultaneously by promoting the shift index to a quantum register and applying controlled circular shifts followed by a wavelet analysis unitary. The resulting construction yields an explicit, fully unitary quantum representation of redundant wavelet coefficients and supports coherent postprocessing, including quantum shrinkage via ancilla-driven completely positive trace preserving maps. The second formulation is based on the Hadamard test and uses diagonal phase operators to probe scale-shift wavelet structure through interference, providing direct access to shift-invariant energy scalograms and multiscale spectra without explicit coefficient reconstruction. Together, these two approaches demonstrate that redundancy and translation invariance can be exploited rather than avoided in the quantum setting. Applications to denoising, feature extraction, and spectral scaling illustrate how quantum NDWTs provide a flexible and physically meaningful foundation for multiscale quantum signal processing.

quant-ph

Adjusted Kolmogorov Complexity of Binary Words with Empirical Entropy Normalization

Kolmogorov complexity of a finite binary word reflects both algorithmic structure and the empirical distribution of symbols appearing in the word. Words with symbol frequencies far from one half have smaller combinatorial richness and therefore appear less complex under the standard definition. In this paper an entropy-normalized complexity measure is introduced that divides the Kolmogorov complexity of a word by the empirical entropy of its observed distribution of zeros and ones. This adjustment isolates intrinsic descriptive complexity from the purely combinatorial effect of symbol imbalance. For Martin Löf random sequences under constructive exchangeable measures, the adjusted complexity grows linearly and converges to one. A pathological construction shows that regularity of the underlying measure is essential. The proposed framework connects Kolmogorov complexity, empirical entropy, and randomness in a natural manner and suggests applications in randomness testing and in the analysis of structured binary data.

stat.CO

The Dual Wavelet Spectra: An Alternative Perspective on Hurst Exponent Estimation with Application to Mammogram Classification

The wavelet spectra is a common starting point for estimating the Hurst exponent of a self-similar signal using wavelet-based techniques. The decay of the $\log_2$ average energy of the detail wavelet coefficients as a function of the level of signal decomposition can be used to construct estimators for this parameter. In this paper, we expand on previous work which introduced the ``dual" wavelet spectra, where decomposition levels are instead treated as a function of energy values, and propose a relationship between its slope and the Hurst exponent by inverting the standard wavelet spectra, thereby creating a new estimator. The effectiveness of this estimator and its sensitivity to several settings are demonstrated through a simulation study. Finally, we show how the technique performs as a feature extraction method by applying it to the task of detecting the presence of breast cancer in mammogram images. Dual spectra wavelet features had a statistically significant effect on the log-odds of Cancer.

stat.ME

Quantum Framework for Wavelet Shrinkage

This paper develops a unified framework for quantum wavelet shrinkage, extending classical denoising ideas into the quantum domain. Shrinkage is interpreted as a completely positive trace-preserving process, so attenuation of coefficients is carried out through controlled decoherence rather than nonlinear thresholding. Phase damping and ancilla-driven constructions realize this behavior coherently and show that statistical adaptivity and quantum unitarity can be combined within a single circuit model. The same physical mechanisms that reduce quantum coherence, such as dephasing and amplitude damping, are repurposed as programmable resources for noise suppression. Practical demonstrations implemented with Qiskit illustrate how circuits and channels emulate coefficientwise attenuation, and all examples are provided as Jupyter notebooks in the companion GitHub repository. Encoding schemes for amplitude, phase, and hybrid representations are examined in relation to transform coherence and measurement feasibility, and realizations suited to current noisy intermediate-scale quantum devices are discussed. The work provides a conceptual and experimental link between wavelet-based statistical inference and quantum information processing, and shows how engineered decoherence can act as an operational surrogate for classical shrinkage.

quant-ph

Bayesian Meta-Analysis with Application in Dental Studies

Dental caries remain a persistent global health challenge, and fluoride varnish is widely used as a preventive intervention. This study synthesizes evidence from multiple clinical trials to evaluate the effectiveness of fluoride varnish in reducing Decayed-Missing-Filled (DMF) surfaces. The principal measure of efficacy is the Prevented Fraction (PF), representing the proportional reduction in caries relative to untreated controls. A comprehensive meta-analysis was conducted using fixed-effect and random-effects models, complemented by hierarchical Bayesian inference. The Bayesian framework incorporated multiple prior distributions on between-study variance, including Pareto, half-normal, uniform, beta, and scaled chi-square forms, to assess robustness under alternative heterogeneity assumptions. Across all specifications, the pooled estimate indicated an approximate 43% reduction in caries incidence, with credible intervals consistently excluding the null. Compared to classical methods, the Bayesian approach provided richer uncertainty quantification through full posterior distributions, allowed principled incorporation of prior evidence, and offered improved inference under heterogeneity and small-sample conditions. The stability of posterior estimates across diverse priors reinforces the robustness and reliability of the conclusions. Overall, findings confirm fluoride varnish as an effective and consistent preventive measure, and demonstrate the value of Bayesian hierarchical modeling as a powerful complement to traditional meta-analytic techniques in dental public health research.

stat.AP

Wavelet Based Cross Correlations with Applications

Wavelet Transforms are a widely used technique for decomposing a signal into coefficient vectors that correspond to distinct frequency/scale bands while retaining time localization. This property enables an adaptive analysis of signals at different scales, capturing both temporal and spectral patterns. By examining how correlations between two signals vary across these scales, we obtain a more nuanced understanding of their relationship than what is possible from a single global correlation measure. In this work, we expand on the theory of wavelet-based correlations already used in the literature and elaborate on wavelet correlograms, partial wavelet correlations, and additive wavelet correlations using the Pearson and Kendall definitions. We use both Orthogonal and Non-decimated discrete Wavelet Transforms, and assess the robustness of these correlations under different wavelet bases. Simulation studies are conducted to illustrate these methods, and we conclude with applications to real-world datasets.

stat.AP

A Multiscale Approach for Enhancing Weak Signal Detection

Stochastic resonance (SR), a phenomenon originally introduced in climate modeling, enhances signal detection by leveraging optimal noise levels within non-linear systems. Traditional SR techniques, mainly based on single-threshold detectors, are limited to signals whose behavior does not depend on time. Often large amounts of noise are needed to detect weak signals, which can distort complex signal characteristics. To address these limitations, this study explores multi-threshold systems and the application of SR in multiscale applications using wavelet transforms. In the multiscale domain signals can be analyzed at different levels of resolution to better understand the underlying dynamics. We propose a double-threshold detection system that integrates two single-threshold detectors to enhance weak signal detection. We evaluate it both in the original data domain and in the multiscale domain using simulated and real-world signals and compare its performance with existing methods. Experimental results demonstrate that, in the original data domain, the proposed double-threshold detector significantly improves weak signal detection compared to conventional single-threshold approaches. Its performance is further improved in the frequency domain, requiring lower noise levels while outperforming existing detection systems. This study advances SR-based detection methodologies by introducing a robust approach to weak signal identification, with potential applications in various disciplines.

eess.SP

Ovarian Cancer Diagnostics using Wavelet Packet Scaling Descriptors

Detecting early-stage ovarian cancer accurately and efficiently is crucial for timely treatment. Various methods for early diagnosis have been explored, including a focus on features derived from protein mass spectra, but these tend to overlook the complex interplay across protein expression levels. We propose an innovative method to automate the search for diagnostic features in these spectra by analyzing their inherent scaling characteristics. We compare two techniques for estimating the self-similarity in a signal using the scaling behavior of its wavelet packet decomposition. The methods are applied to the mass spectra using a rolling window approach, yielding a collection of self-similarity indexes that capture protein interactions, potentially indicative of ovarian cancer. Then, the most discriminatory scaling descriptors from this collection are selected for use in classification algorithms. To assess their effectiveness for early diagnosis of ovarian cancer, the techniques are applied to two datasets from the American National Cancer Institute. Comparative evaluation against an existing wavelet-based method shows that one wavelet packet-based technique led to improved diagnostic performance for one of the analyzed datasets (95.67% vs. 96.78% test accuracy, respectively). This highlights the potential of wavelet packet-based methods to capture novel diagnostic information related to ovarian cancer. This innovative approach offers promise for better early detection and improved patient outcomes in ovarian cancer.

stat.AP

A Method for Detecting Murmurous Heart Sounds based on Self-similar Properties

A heart murmur is an atypical sound produced by the flow of blood through the heart. It can be a sign of a serious heart condition, so detecting heart murmurs is critical for identifying and managing cardiovascular diseases. However, current methods for identifying murmurous heart sounds do not fully utilize the valuable insights that can be gained by exploring intrinsic properties of heart sound signals. To address this issue, this study proposes a new discriminatory set of multiscale features based on the self-similarity and complexity properties of heart sounds, as derived in the wavelet domain. Self-similarity is characterized by assessing fractal behaviors, while complexity is explored by calculating wavelet entropy. We evaluated the diagnostic performance of these proposed features for detecting murmurs using a set of standard classifiers. When applied to a publicly available heart sound dataset, our proposed wavelet-based multiscale features achieved comparable performance to existing methods with fewer features. This suggests that self-similarity and complexity properties in heart sounds could be potential biomarkers for improving the accuracy of murmur detection.

eess.SP

Wavelet-based estimation of power densities of size-biased data

We propose a new wavelet-based method for density estimation when the data are size-biased. More specifically, we consider a power of the density of interest, where this power exceeds 1/2. Warped wavelet bases are employed, where warping is attained by some continuous cumulative distribution function. A special case is the conventional orthonormal wavelet estimation, where the warping distribution is the standard continuous uniform. We show that both linear and nonlinear wavelet estimators are consistent, with optimal and/or near-optimal rates. Monte Carlo simulations are performed to compare four special settings which are easy to interpret in practice. An application with a real dataset on fatal traffic accidents involving alcohol illustrates the method. We observe that warped bases provide more flexible and superior estimates for both simulated and real data. Moreover, we find that estimating the power of a density (for instance, its square root) further improves the results.

stat.ME

Early Detection of Ovarian Cancer by Wavelet Analysis of Protein Mass Spectra

Accurate and efficient detection of ovarian cancer at early stages is critical to ensure proper treatments for patients. Among the first-line modalities investigated in studies of early diagnosis are features distilled from protein mass spectra. This method, however, considers only a specific subset of spectral responses and ignores the interplay among protein expression levels, which can also contain diagnostic information. We propose a new modality that automatically searches protein mass spectra for discriminatory features by considering the self-similar nature of the spectra. Self-similarity is assessed by taking a wavelet decomposition of protein mass spectra and estimating the rate of level-wise decay in the energies of the resulting wavelet coefficients. Level-wise energies are estimated in a robust manner using distance variance, and rates are estimated locally via a rolling window approach. This results in a collection of rates that can be used to characterize the interplay among proteins, which can be indicative of cancer presence. Discriminatory descriptors are then selected from these evolutionary rates and used as classifying features. The proposed wavelet-based features are used in conjunction with features proposed in the existing literature for early stage diagnosis of ovarian cancer using two datasets published by the American National Cancer Institute. Including the wavelet-based features from the new modality results in improvements in diagnostic performance for early-stage ovarian cancer detection. This demonstrates the ability of the proposed modality to characterize new ovarian cancer diagnostic information.

cs.LG