arXiv subjects

Brenda M. Rubenstein

Publications and source records attributed to Brenda M. Rubenstein.

23 records · Page 2Linked to original sources

arXiv2018

QMCPACK : An open source ab initio Quantum Monte Carlo package for the electronic structure of atoms, molecules, and solids

QMCPACK is an open source quantum Monte Carlo package for ab-initio electronic structure calculations. It supports calculations of metallic and insulating solids, molecules, atoms, and some model Hamiltonians. Implemented real space quantum Monte Carlo algorithms include variational, diffusion, and reptation Monte Carlo. QMCPACK uses Slater-Jastrow type trial wave functions in conjunction with a sophisticated optimizer capable of optimizing tens of thousands of parameters. The orbital space auxiliary field quantum Monte Carlo method is also implemented, enabling cross validation between different highly accurate methods. The code is specifically optimized for calculations with large numbers of electrons on the latest high performance computing architectures, including multicore central processing unit (CPU) and graphical processing unit (GPU) systems. We detail the program's capabilities, outline its structure, and give examples of its use in current research calculations. The package is available at http://www.qmcpack.org .

physics.comp-ph↗

arXiv2017

Fractional Path Integral Monte Carlo

Fractional derivatives are nonlocal differential operators of real order that often appear in models of anomalous diffusion and a variety of nonlocal phenomena. Recently, a version of the Schrödinger Equation containing a fractional Laplacian has been proposed. In this work, we develop a Fractional Path Integral Monte Carlo algorithm that can be used to study the finite temperature behavior of the time-independent Fractional Schrödinger Equation for a variety of potentials. In so doing, we derive an analytic form for the finite temperature fractional free particle density matrix and demonstrate how it can be sampled to acquire new sets of particle positions. We employ this algorithm to simulate both the free particle and $^{4}$He (Aziz) Hamiltonians. We find that the fractional Laplacian strongly encourages particle delocalization, even in the presence of interactions, suggesting that fractional Hamiltonians may manifest atypical forms of condensation. Our work opens the door to studying fractional Hamiltonians with arbitrarily complex potentials that escape analytical solutions.

cond-mat.stat-mech↗

arXiv2016

Auxiliary-field based trial wave functions in quantum Monte Carlo calculations

Quantum Monte Carlo (QMC) algorithms have long relied on Jastrow factors to incorporate dynamic correlation into trial wave functions. While Jastrow-type wave functions have been widely employed in real-space algorithms, they have seen limited use in second-quantized QMC methods, particularly in projection methods that involve a stochastic evolution of the wave function in imaginary time. Here we propose a scheme for generating Jastrow-type correlated trial wave functions for auxiliary-field QMC methods. The method is based on decoupling the two-body Jastrow into one-body projectors coupled to auxiliary fields, which then operate on a single determinant to produce a multi-determinant trial wave function. We demonstrate that intelligent sampling of the most significant determinants in this expansion can produce compact trial wave functions that reduce errors in the calculated energies. Our technique may be readily generalized to accommodate a wide range of two-body Jastrow factors and applied to a variety of model and chemical systems.

cond-mat.str-el↗

arXiv2012

Finite-Temperature Auxiliary-Field Quantum Monte Carlo for Bose-Fermi Mixtures

We present a quantum Monte Carlo (QMC) technique for calculating the exact finite-temperature properties of Bose-Fermi mixtures. The Bose-Fermi Auxiliary-Field Quantum Monte Carlo (BF-AFQMC) algorithm combines two methods, a finite-temperature AFQMC algorithm for bosons and a variant of the standard AFQMC algorithm for fermions, into one algorithm for mixtures. We demonstrate the accuracy of our method by comparing its results for the Bose-Hubbard and Bose-Fermi-Hubbard models against those produced using exact diagonalization for small systems. Comparisons are also made with mean-field theory and the worm algorithm for larger systems. As is the case with most fermion Hamiltonians, a sign or phase problem is present in BF-AFQMC. We discuss the nature of these problems in this framework and describe how they can be controlled with well-studied approximations to expand BF-AFQMC's reach. The new algorithm can serve as an essential tool for answering many unresolved questions about many-body physics in mixed Bose-Fermi systems.

cond-mat.quant-gas↗

arXiv2012

Controlling the folding and substrate-binding of proteins using polymer brushes

The extent of coupling between the folding of a protein and its binding to a substrate varies from protein to protein. Some proteins have highly structured native states in solution, while others are natively disordered and only fold fully upon binding. In this Letter, we use Monte Carlo simulations to investigate how disordered polymer chains grafted around a binding site affect the folding and binding of three model proteins. The protein that approaches the substrate fully folded is more hindered during the binding process than those whose folding and binding are cooperative. The polymer chains act as localized crowding agents and can select correctly folded and bound configurations in favor of non-specifically adsorbed states. The free energy change for forming all intra-protein and protein-substrate contacts can depend non-monotonically on the polymer length.

cond-mat.soft↗