arXiv subjects

Brian Hutchinson

Publications and source records attributed to Brian Hutchinson.

At least 19 recordsLinked to original sources

arXiv2026

Probabilistic neural network approach to determining parameters of eclipsing binaries

Eclipsing binaries provide one of the most direct mechanisms for measuring stellar properties such as mass and radius, but historically, determining these properties has been non-trivial and computationally prohibitive. As such, only a small fraction of all eclipsing binaries for which data have been available have been fully characterized. To improve computational efficiency, we construct an uncertainty-aware neural network which can ingest phase-folded light curves in any of 50 commonly used passbands, combined with phase-folded radial velocity measurements for both primary and secondary, as well as fluxes across the spectral energy distribution to predict stellar and orbital parameters of eclipsing binaries. The model was trained to be agnostic to the presence of third light, spots (both cool and hot), and incomplete data. As the model is operating in a probabilistic framework, it is also capable of outputting uncertainties in all of the parameters. The model was trained on synthetic data, and applied to a set of $\sim$200 previously solved real eclipsing binaries to demonstrate its performance. The model is capable of determining masses and radii of eclipsing binaries with precision of $\lesssim$20\% and $T_{\rm eff}$ with precision of $\sim$500 K in only a fraction of the time it takes the more traditional solvers. Although the resulting uncertainties are larger than what is possible to produce using more boutique analysis of individual stars, in the era of large photometric surveys, this approach allows to identify the most interesting systems, and it provides a starting point of the distributions in all of the parameters that these solvers could improve upon.

astro-ph.SR↗

arXiv2025

PRIMRose: Insights into the Per-Residue Energy Metrics of Proteins with Double InDel Mutations using Deep Learning

Understanding how protein mutations affect protein structure is essential for advancements in computational biology and bioinformatics. We introduce PRIMRose, a novel approach that predicts energy values for each residue given a mutated protein sequence. Unlike previous models that assess global energy shifts, our method analyzes the localized energetic impact of double amino acid insertions or deletions (InDels) at the individual residue level, enabling residue-specific insights into structural and functional disruption. We implement a Convolutional Neural Network architecture to predict the energy changes of each residue in a protein mutation. We train our model on datasets constructed from nine proteins, grouped into three categories: one set with exhaustive double InDel mutations, another with approximately 145k randomly sampled double InDel mutations, and a third with approximately 80k randomly sampled double InDel mutations. Our model achieves high predictive accuracy across a range of energy metrics as calculated by the Rosetta molecular modeling suite and reveals localized patterns that influence model performance, such as solvent accessibility and secondary structure context. This per-residue analysis offers new insights into the mutational tolerance of specific regions within proteins and provides higher interpretable and biologically meaningful predictions of InDels' effects.

q-bio.BM↗

arXiv2025

The Nineteenth Data Release of the Sloan Digital Sky Survey

Mapping the local and distant Universe is key to our understanding of it. For decades, the Sloan Digital Sky Survey (SDSS) has made a concerted effort to map millions of celestial objects to constrain the physical processes that govern our Universe. The most recent and fifth generation of SDSS (SDSS-V) is organized into three scientific ``mappers". Milky Way Mapper (MWM) that aims to chart the various components of the Milky Way and constrain its formation and assembly, Black Hole Mapper (BHM), which focuses on understanding supermassive black holes in distant galaxies across the Universe, and Local Volume Mapper (LVM), which uses integral field spectroscopy to map the ionized interstellar medium in the local group. This paper describes and outlines the scope and content for the nineteenth data release (DR19) of SDSS and the most substantial to date in SDSS-V. DR19 is the first to contain data from all three mappers. Additionally, we also describe nine value added catalogs (VACs) that enhance the science that can be conducted with the SDSS-V data. Finally, we discuss how to access SDSS DR19 and provide illustrative examples and tutorials.

astro-ph.GA↗

arXiv2025

Gaia Net: Towards robust spectroscopic parameters of stars of all evolutionary stages

We present a new processing of XP spectra for 220 million stars released in Gaia DR3. The new data model is capable of handling objects with Teff between 2000 and 50,000 K, and with log g between 0 and 10, including objects of multitude of masses and evolutionary stages. This includes for the first time ever robust processing of spectroscopic parameters for pre-main sequence stars, with log g sensitivity towards their age. Through this analysis we examine the distribution of young low mass stars with ages of up to 20 Myr in the solar neighborhood, and we identify a new massive (>1000 stars) population, Ophion, which is found east of Sco Cen. This population appears to be fully disrupted, with negligible kinematic coherence. Nonetheless, due its young age it appears to still persist as a spacial overdensity. Through improved determination of ages of the nearby stars, it may be possible to better recover star forming history of the solar neighborhood outside of the moving groups.

astro-ph.SR↗

arXiv2024

Emulating the Global Change Analysis Model with Deep Learning

The Global Change Analysis Model (GCAM) simulates complex interactions between the coupled Earth and human systems, providing valuable insights into the co-evolution of land, water, and energy sectors under different future scenarios. Understanding the sensitivities and drivers of this multisectoral system can lead to more robust understanding of the different pathways to particular outcomes. The interactions and complexity of the coupled human-Earth systems make GCAM simulations costly to run at scale - a requirement for large ensemble experiments which explore uncertainty in model parameters and outputs. A differentiable emulator with similar predictive power, but greater efficiency, could provide novel scenario discovery and analysis of GCAM and its outputs, requiring fewer runs of GCAM. As a first use case, we train a neural network on an existing large ensemble that explores a range of GCAM inputs related to different relative contributions of energy production sources, with a focus on wind and solar. We complement this existing ensemble with interpolated input values and a wider selection of outputs, predicting 22,528 GCAM outputs across time, sectors, and regions. We report a median $R^2$ score of 0.998 for the emulator's predictions and an $R^2$ score of 0.812 for its input-output sensitivity.

econ.GN↗

arXiv2024

DiffESM: Conditional Emulation of Temperature and Precipitation in Earth System Models with 3D Diffusion Models

Earth System Models (ESMs) are essential for understanding the interaction between human activities and the Earth's climate. However, the computational demands of ESMs often limit the number of simulations that can be run, hindering the robust analysis of risks associated with extreme weather events. While low-cost climate emulators have emerged as an alternative to emulate ESMs and enable rapid analysis of future climate, many of these emulators only provide output on at most a monthly frequency. This temporal resolution is insufficient for analyzing events that require daily characterization, such as heat waves or heavy precipitation. We propose using diffusion models, a class of generative deep learning models, to effectively downscale ESM output from a monthly to a daily frequency. Trained on a handful of ESM realizations, reflecting a wide range of radiative forcings, our DiffESM model takes monthly mean precipitation or temperature as input, and is capable of producing daily values with statistical characteristics close to ESM output. Combined with a low-cost emulator providing monthly means, this approach requires only a small fraction of the computational resources needed to run a large ensemble. We evaluate model behavior using a number of extreme metrics, showing that DiffESM closely matches the spatio-temporal behavior of the ESM output it emulates in terms of the frequency and spatial characteristics of phenomena such as heat waves, dry spells, or rainfall intensity.

physics.ao-ph↗

arXiv2024

Diffusion-Based Joint Temperature and Precipitation Emulation of Earth System Models

Earth system models (ESMs) are the principal tools used in climate science to generate future climate projections under various atmospheric emissions scenarios on a global or regional scale. Generative deep learning approaches are suitable for emulating these tools due to their computational efficiency and ability, once trained, to generate realizations in a fraction of the time required by ESMs. We extend previous work that used a generative probabilistic diffusion model to emulate ESMs by targeting the joint emulation of multiple variables, temperature and precipitation, by a single diffusion model. Joint generation of multiple variables is critical to generate realistic samples of phenomena resulting from the interplay of multiple variables. The diffusion model emulator takes in the monthly mean-maps of temperature and precipitation and produces the daily values of each of these variables that exhibit statistical properties similar to those generated by ESMs. Our results show the outputs from our extended model closely resemble those from ESMs on various climate metrics including dry spells and hot streaks, and that the joint distribution of temperature and precipitation in our sample closely matches those of ESMs.

physics.ao-ph↗

arXiv2024

A self-consistent data-driven model for determining stellar parameters from optical and near-IR spectra

Data-driven models, which apply machine learning to infer physical properties from large quantities of data, have become increasingly important for extracting stellar properties from spectra. In general, these methods have been applied to data in one wavelength regime or another. For example, APOGEE Net has been applied to near-IR spectra from the SDSS-V APOGEE survey to predict stellar parameters (Teff, log g, and [Fe/H]) for all stars with Teff from 3,000 to 50,000 K, including pre-main sequence stars, OB stars, main sequence dwarfs, and red giants. The increasing number of large surveys across multiple wavelength regimes provides the opportunity to improve data-driven models through learning from multiple datasets at once. In SDSS-V, a number of spectra of stars will be observed not just with APOGEE in near-IR, but also with BOSS in optical regime. Here we aim to develop a complementary model, BOSS Net, that will replicate the performance of APOGEE Net in these optical data through label transfer. We further improve the model by extending it to brown dwarfs, as well as white dwarfs, resulting in a comprehensive coverage between 1700<Teff<100,000 K and 0<log g<10, to ensure BOSS Net can reliably measure parameters of most of the commonly observed objects within this parameter space. We also update APOGEE Net to achieve a comparable performance in the near-IR regime. The resulting models provide a robust tool for measuring stellar evolutionary states, and in turn, enable characterization of the star forming history of the Galaxy.

astro-ph.SR↗

arXiv2023

Proposal-based Few-shot Sound Event Detection for Speech and Environmental Sounds with Perceivers

Many applications involve detecting and localizing specific sound events within long, untrimmed documents, including keyword spotting, medical observation, and bioacoustic monitoring for conservation. Deep learning techniques often set the state-of-the-art for these tasks. However, for some types of events, there is insufficient labeled data to train such models. In this paper, we propose a region proposal-based approach to few-shot sound event detection utilizing the Perceiver architecture. Motivated by a lack of suitable benchmark datasets, we generate two new few-shot sound event localization datasets: "Vox-CASE," using clips of celebrity speech as the sound event, and "ESC-CASE," using environmental sound events. Our highest performing proposed few-shot approaches achieve 0.483 and 0.418 F1-score, respectively, with 5-shot 5-way tasks on these two datasets. These represent relative improvements of 72.5% and 11.2% over strong proposal-free few-shot sound event detection baselines.

eess.AS↗

arXiv2023

RoseNet: Predicting Energy Metrics of Double InDel Mutants Using Deep Learning

An amino acid insertion or deletion, or InDel, can have profound and varying functional impacts on a protein's structure. InDel mutations in the transmembrane conductor regulator protein for example give rise to cystic fibrosis. Unfortunately performing InDel mutations on physical proteins and studying their effects is a time prohibitive process. Consequently, modeling InDels computationally can supplement and inform wet lab experiments. In this work, we make use of our data sets of exhaustive double InDel mutations for three proteins which we computationally generated using a robotics inspired inverse kinematics approach available in Rosetta. We develop and train a neural network, RoseNet, on several structural and energetic metrics output by Rosetta during the mutant generation process. We explore and present how RoseNet is able to emulate the exhaustive data set using deep learning methods, and show to what extent it can predict Rosetta metrics for unseen mutant sequences with two InDels. RoseNet achieves a Pearson correlation coefficient median accuracy of 0.775 over all Rosetta scores for the largest protein. Furthermore, a sensitivity analysis is performed to determine the necessary quantity of data required to accurately emulate the structural scores for computationally generated mutants. We show that the model can be trained on minimal data (<50%) and still retain a high level of accuracy.

q-bio.BM↗

arXiv2023

DiffESM: Conditional Emulation of Earth System Models with Diffusion Models

Earth System Models (ESMs) are essential tools for understanding the impact of human actions on Earth's climate. One key application of these models is studying extreme weather events, such as heat waves or dry spells, which have significant socioeconomic and environmental consequences. However, the computational demands of running a sufficient number of simulations to analyze the risks are often prohibitive. In this paper we demonstrate that diffusion models -- a class of generative deep learning models -- can effectively emulate the spatio-temporal trends of ESMs under previously unseen climate scenarios, while only requiring a small fraction of the computational resources. We present a diffusion model that is conditioned on monthly averages of temperature or precipitation on a $96 \times 96$ global grid, and produces daily values that are both realistic and consistent with those averages. Our results show that the output from our diffusion model closely matches the spatio-temporal behavior of the ESM it emulates in terms of the frequency of phenomena such as heat waves, dry spells, or rainfall intensity.

physics.ao-ph↗

arXiv2022

APOGEE Net: An expanded spectral model of both low mass and high mass stars

We train a convolutional neural network, APOGEE Net, to predict $T_\mathrm{eff}$, $\log g$, and, for some stars, [Fe/H], based on the APOGEE spectra. This is the first pipeline adapted for these data that is capable of estimating these parameters in a self-consistent manner not only for low mass stars, (such as main sequence dwarfs, pre-main sequence stars, and red giants), but also high mass stars with $T_\mathrm{eff}$ in excess of 50,000 K, including hot dwarfs and blue supergiants. The catalog of ~650,000 stars presented in this paper allows for a detailed investigation of the star forming history of not just the Milky Way, but also of the Magellanic clouds, as different type of objects tracing different parts of these galaxies can be more cleanly selected through their distinct placement in $T_\mathrm{eff}$-$\log g$ parameter space than in previous APOGEE catalogs produced through different pipelines.

astro-ph.GA↗

arXiv2021

Fine-Grained Classroom Activity Detection from Audio with Neural Networks

Instructors are increasingly incorporating student-centered learning techniques in their classrooms to improve learning outcomes. In addition to lecture, these class sessions involve forms of individual and group work, and greater rates of student-instructor interaction. Quantifying classroom activity is a key element of accelerating the evaluation and refinement of innovative teaching practices, but manual annotation does not scale. In this manuscript, we present advances to the young application area of automatic classroom activity detection from audio. Using a university classroom corpus with nine activity labels (e.g., "lecture," "group work," "student question"), we propose and evaluate deep fully connected, convolutional, and recurrent neural network architectures, comparing the performance of mel-filterbank, OpenSmile, and self-supervised acoustic features. We compare 9-way classification performance with 5-way and 4-way simplifications of the task and assess two types of generalization: (1) new class sessions from previously seen instructors, and (2) previously unseen instructors. We obtain strong results on the new fine-grained task and state-of-the-art on the 4-way task: our best model obtains frame-level error rates of 6.2%, 7.7% and 28.0% when generalizing to unseen instructors for the 4-way, 5-way, and 9-way classification tasks, respectively (relative reductions of 35.4%, 48.3% and 21.6% over a strong baseline). When estimating the aggregate time spent on classroom activities, our average root mean squared error is 1.64 minutes per class session, a 54.9% relative reduction over the baseline.

eess.AS↗

arXiv2021

Untangling the Galaxy III: Photometric Search for Pre-main Sequence Stars with Deep Learning

A reliable census of pre-main sequence stars with known ages is critical to our understanding of early stellar evolution, but historically there has been difficulty in separating such stars from the field. We present a trained neural network model, Sagitta, that relies on Gaia DR2 and 2MASS photometry to identify pre-main sequence stars and to derive their age estimates. Our model successfully recovers populations and stellar properties associated with known star forming regions up to five kpc. Furthermore, it allows for a detailed look at the star-forming history of the solar neighborhood, particularly at age ranges to which we were not previously sensitive. In particular, we observe several bubbles in the distribution of stars, the most notable of which is a ring of stars associated with the Local Bubble, which may have common origins with the Gould's Belt.

astro-ph.SR↗

arXiv2021

Loosely Conditioned Emulation of Global Climate Models With Generative Adversarial Networks

Climate models encapsulate our best understanding of the Earth system, allowing research to be conducted on its future under alternative assumptions of how human-driven climate forces are going to evolve. An important application of climate models is to provide metrics of mean and extreme climate changes, particularly under these alternative future scenarios, as these quantities drive the impacts of climate on society and natural systems. Because of the need to explore a wide range of alternative scenarios and other sources of uncertainties in a computationally efficient manner, climate models can only take us so far, as they require significant computational resources, especially when attempting to characterize extreme events, which are rare and thus demand long and numerous simulations in order to accurately represent their changing statistics. Here we use deep learning in a proof of concept that lays the foundation for emulating global climate model output for different scenarios. We train two "loosely conditioned" Generative Adversarial Networks (GANs) that emulate daily precipitation output from a fully coupled Earth system model: one GAN modeling Fall-Winter behavior and the other Spring-Summer. Our GANs are trained to produce spatiotemporal samples: 32 days of precipitation over a 64x128 regular grid discretizing the globe. We evaluate the generator with a set of related performance metrics based upon KL divergence, and find the generated samples to be nearly as well matched to the test data as the validation data is to test. We also find the generated samples to accurately estimate the mean number of dry days and mean longest dry spell in the 32 day samples. Our trained GANs can rapidly generate numerous realizations at a vastly reduced computational expense, compared to large ensembles of climate models, which greatly aids in estimating the statistics of extreme events.

physics.ao-ph↗

arXiv2020

A Study of Few-Shot Audio Classification

Advances in deep learning have resulted in state-of-the-art performance for many audio classification tasks but, unlike humans, these systems traditionally require large amounts of data to make accurate predictions. Not every person or organization has access to those resources, and the organizations that do, like our field at large, do not reflect the demographics of our country. Enabling people to use machine learning without significant resource hurdles is important, because machine learning is an increasingly useful tool for solving problems, and can solve a broader set of problems when put in the hands of a broader set of people. Few-shot learning is a type of machine learning designed to enable the model to generalize to new classes with very few examples. In this research, we address two audio classification tasks (speaker identification and activity classification) with the Prototypical Network few-shot learning algorithm, and assess performance of various encoder architectures. Our encoders include recurrent neural networks, as well as one- and two-dimensional convolutional neural networks. We evaluate our model for speaker identification on the VoxCeleb dataset and ICSI Meeting Corpus, obtaining 5-shot 5-way accuracies of 93.5% and 54.0%, respectively. We also evaluate for activity classification from audio using few-shot subsets of the Kinetics~600 dataset and AudioSet, both drawn from Youtube videos, obtaining 51.5% and 35.2% accuracy, respectively.

eess.AS↗

arXiv2020

DeepClimGAN: A High-Resolution Climate Data Generator

Earth system models (ESMs), which simulate the physics and chemistry of the global atmosphere, land, and ocean, are often used to generate future projections of climate change scenarios. These models are far too computationally intensive to run repeatedly, but limited sets of runs are insufficient for some important applications, like adequately sampling distribution tails to characterize extreme events. As a compromise, emulators are substantially less expensive but may not have all of the complexity of an ESM. Here we demonstrate the use of a conditional generative adversarial network (GAN) to act as an ESM emulator. In doing so, we gain the ability to produce daily weather data that is consistent with what ESM might output over any chosen scenario. In particular, the GAN is aimed at representing a joint probability distribution over space, time, and climate variables, enabling the study of correlated extreme events, such as floods, droughts, or heatwaves.

cs.NE↗

arXiv2020

Systematic Evaluation of Backdoor Data Poisoning Attacks on Image Classifiers

Backdoor data poisoning attacks have recently been demonstrated in computer vision research as a potential safety risk for machine learning (ML) systems. Traditional data poisoning attacks manipulate training data to induce unreliability of an ML model, whereas backdoor data poisoning attacks maintain system performance unless the ML model is presented with an input containing an embedded "trigger" that provides a predetermined response advantageous to the adversary. Our work builds upon prior backdoor data-poisoning research for ML image classifiers and systematically assesses different experimental conditions including types of trigger patterns, persistence of trigger patterns during retraining, poisoning strategies, architectures (ResNet-50, NasNet, NasNet-Mobile), datasets (Flowers, CIFAR-10), and potential defensive regularization techniques (Contrastive Loss, Logit Squeezing, Manifold Mixup, Soft-Nearest-Neighbors Loss). Experiments yield four key findings. First, the success rate of backdoor poisoning attacks varies widely, depending on several factors, including model architecture, trigger pattern and regularization technique. Second, we find that poisoned models are hard to detect through performance inspection alone. Third, regularization typically reduces backdoor success rate, although it can have no effect or even slightly increase it, depending on the form of regularization. Finally, backdoors inserted through data poisoning can be rendered ineffective after just a few epochs of additional training on a small set of clean data without affecting the model's performance.

cs.CV↗