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Brian Seed

Publications and source records attributed to Brian Seed.

2 recordsLinked to original sources

Influence of Multiplicative Stochastic Variation on Translational Elongation Rates

Recent experiments have shown that stochastic effects exerted at the level of translation contribute a substantial portion of the variation in abundance of proteins expressed at moderate to high levels. This study analyzes translational noise arising from fluctuations in residue-specific elongation rates. The resulting variation has multiplicative components that lead individual protein abundances in a population to exhibit approximately log-normal behavior. The high variability inherent in the process leads to parameter variation that has the features of a type of noise in biological systems that has been characterized as extrinsic. Elongation rate variation offers an accounting for a major component of extrinsic noise, and the analysis provided here highlights a probability distribution that is a natural extension of the Poisson and has broad applicability to many types of multiplicative noise processes.

q-bio.SC

Polarization Tensors and the Photon Field

A direct calculation of the elements of the photon polarization vector for arbitrary momentum in the helicity basis shows that it is not a vector but a complex bivector. The bivector real and imaginary parts can be directly equated with electromagnetic field amplitudes and the associated field equations are the Maxwell equations in time-imaginary space. The bivector field exhibits a phase freedom (Berry, or geometric phase) dependent on the rotation history of the field or observer. Phase freedom is not intrinsically present in the longitudinal excitations of the field and a general argument connects quantization of angular momentum with the observation of phase changes associated with frame rotation. Current and translation operators can be defined for bivector fields that are free of defects associated with a quantized vector potential.

quant-ph