arXiv subjects

Bruno Nicenboim

Publications and source records attributed to Bruno Nicenboim.

8 recordsLinked to original sources

arXiv2026

Modeling semantic association in self-paced reading with language model embeddings

Semantic association between a word and its context has been identified as an important component of reading comprehension, even when word predictability is accounted for. Recent research has highlighted the potential of language model ( LM) embeddings to quantify semantic association. Yet, embedding-based semantic association have been operationalized in a myriad of ways. In this study, we use embeddings from LMs to estimate semantic association on a corpus of joint electroencephalography (EEG) and self-paced reading of natural, Dutch texts. Semantic association is calculated in ten different implementations that vary the embedding model and context lengths. The effects of semantic association across the different implementations on the N400 and self-paced reading times are examined using Bayesian hierarchical models and Bayes factor. The results show that the choice of embedding model can alter the estimated effect of semantic association on both the N400 and self-paced reading times. Furthermore, the results demonstrate a promising potential of sentence embeddings for capturing semantic association, as only implementations relying on sentence embeddings indicate reliable results of semantic association beyond word predictability on both neural and behavioral measures. Together, these findings highlight the importance of methodological choices in quantifying semantic association.

cs.CL↗

arXiv2023

Data aggregation can lead to biased inferences in Bayesian linear mixed models and Bayesian ANOVA: A simulation study

Bayesian linear mixed-effects models and Bayesian ANOVA are increasingly being used in the cognitive sciences to perform null hypothesis tests, where a null hypothesis that an effect is zero is compared with an alternative hypothesis that the effect exists and is different from zero. While software tools for Bayes factor null hypothesis tests are easily accessible, how to specify the data and the model correctly is often not clear. In Bayesian approaches, many authors use data aggregation at the by-subject level and estimate Bayes factors on aggregated data. Here, we use simulation-based calibration for model inference applied to several example experimental designs to demonstrate that, as with frequentist analysis, such null hypothesis tests on aggregated data can be problematic in Bayesian analysis. Specifically, when random slope variances differ (i.e., violated sphericity assumption), Bayes factors are too conservative for contrasts where the variance is small and they are too liberal for contrasts where the variance is large. Running Bayesian ANOVA on aggregated data can - if the sphericity assumption is violated - likewise lead to biased Bayes factor results. Moreover, Bayes factors for by-subject aggregated data are biased (too liberal) when random item slope variance is present but ignored in the analysis. These problems can be circumvented or reduced by running Bayesian linear mixed-effects models on non-aggregated data such as on individual trials, and by explicitly modeling the full random effects structure. Reproducible code is available from \url{https://osf.io/mjf47/}.

stat.ME↗

arXiv2021

Workflow Techniques for the Robust Use of Bayes Factors

Inferences about hypotheses are ubiquitous in the cognitive sciences. Bayes factors provide one general way to compare different hypotheses by their compatibility with the observed data. Those quantifications can then also be used to choose between hypotheses. While Bayes factors provide an immediate approach to hypothesis testing, they are highly sensitive to details of the data/model assumptions. Moreover it's not clear how straightforwardly this approach can be implemented in practice, and in particular how sensitive it is to the details of the computational implementation. Here, we investigate these questions for Bayes factor analyses in the cognitive sciences. We explain the statistics underlying Bayes factors as a tool for Bayesian inferences and discuss that utility functions are needed for principled decisions on hypotheses. Next, we study how Bayes factors misbehave under different conditions. This includes a study of errors in the estimation of Bayes factors. Importantly, it is unknown whether Bayes factor estimates based on bridge sampling are unbiased for complex analyses. We are the first to use simulation-based calibration as a tool to test the accuracy of Bayes factor estimates. Moreover, we study how stable Bayes factors are against different MCMC draws. We moreover study how Bayes factors depend on variation in the data. We also look at variability of decisions based on Bayes factors and how to optimize decisions using a utility function. We outline a Bayes factor workflow that researchers can use to study whether Bayes factors are robust for their individual analysis, and we illustrate this workflow using an example from the cognitive sciences. We hope that this study will provide a workflow to test the strengths and limitations of Bayes factors as a way to quantify evidence in support of scientific hypotheses. Reproducible code is available from https://osf.io/y354c/.

stat.ME↗

arXiv2018

Feature overwriting as a finite mixture process: Evidence from comprehension data

The ungrammatical sentence "The key to the cabinets are on the table" is known to lead to an illusion of grammaticality. As discussed in the meta-analysis by Jaeger et al., 2017, faster reading times are observed at the verb are in the agreement-attraction sentence above compared to the equally ungrammatical sentence "The key to the cabinet are on the table". One explanation for this facilitation effect is the feature percolation account: the plural feature on cabinets percolates up to the head noun key, leading to the illusion. An alternative account is in terms of cue-based retrieval (Lewis & Vasishth, 2005), which assumes that the non-subject noun cabinets is misretrieved due to a partial feature-match when a dependency completion process at the auxiliary initiates a memory access for a subject with plural marking. We present evidence for yet another explanation for the observed facilitation. Because the second sentence has two nouns with identical number, it is possible that these are, in some proportion of trials, more difficult to keep distinct, leading to slower reading times at the verb in the first sentence above; this is the feature overwriting account of Nairne, 1990. We show that the feature overwriting proposal can be implemented as a finite mixture process. We reanalysed ten published data-sets, fitting hierarchical Bayesian mixture models to these data assuming a two-mixture distribution. We show that in nine out of the ten studies, a mixture distribution corresponding to feature overwriting furnishes a superior fit over both the feature percolation and the cue-based retrieval accounts.

stat.ML↗

arXiv2017

Models of retrieval in sentence comprehension: A computational evaluation using Bayesian hierarchical modeling

Research on interference has provided evidence that the formation of dependencies between non-adjacent words relies on a cue-based retrieval mechanism. Two different models can account for one of the main predictions of interference, i.e., a slowdown at a retrieval site, when several items share a feature associated with a retrieval cue: Lewis and Vasishth's (2005) activation-based model and McElree's (2000) direct access model. Even though these two models have been used almost interchangeably, they are based on different assumptions and predict differences in the relationship between reading times and response accuracy. The activation-based model follows the assumptions of ACT-R, and its retrieval process behaves as a lognormal race between accumulators of evidence with a single variance. Under this model, accuracy of the retrieval is determined by the winner of the race and retrieval time by its rate of accumulation. In contrast, the direct access model assumes a model of memory where only the probability of retrieval varies between items; in this model, differences in latencies are a by-product of the possibility and repairing incorrect retrievals. We implemented both models in a Bayesian hierarchical framework in order to evaluate them and compare them. We show that some aspects of the data are better fit under the direct access model than under the activation-based model. We suggest that this finding does not rule out the possibility that retrieval may be behaving as a race model with assumptions that follow less closely the ones from the ACT-R framework. We show that by introducing a modification of the activation model, i.e, by assuming that the accumulation of evidence for retrieval of incorrect items is not only slower but noisier (i.e., different variances for the correct and incorrect items), the model can provide a fit as good as the one of the direct access model.

cs.CL↗

arXiv2017

Modelling dependency completion in sentence comprehension as a Bayesian hierarchical mixture process: A case study involving Chinese relative clauses

We present a case-study demonstrating the usefulness of Bayesian hierarchical mixture modelling for investigating cognitive processes. In sentence comprehension, it is widely assumed that the distance between linguistic co-dependents affects the latency of dependency resolution: the longer the distance, the longer the retrieval time (the distance-based account). An alternative theory, direct-access, assumes that retrieval times are a mixture of two distributions: one distribution represents successful retrievals (these are independent of dependency distance) and the other represents an initial failure to retrieve the correct dependent, followed by a reanalysis that leads to successful retrieval. We implement both models as Bayesian hierarchical models and show that the direct-access model explains Chinese relative clause reading time data better than the distance account.

stat.AP↗

arXiv2016

Statistical methods for linguistic research: Foundational Ideas - Part II

We provide an introductory review of Bayesian data analytical methods, with a focus on applications for linguistics, psychology, psycholinguistics, and cognitive science. The empirically oriented researcher will benefit from making Bayesian methods part of their statistical toolkit due to the many advantages of this framework, among them easier interpretation of results relative to research hypotheses, and flexible model specification. We present an informal introduction to the foundational ideas behind Bayesian data analysis, using, as an example, a linear mixed models analysis of data from a typical psycholinguistics experiment. We discuss hypothesis testing using the Bayes factor, and model selection using cross-validation. We close with some examples illustrating the flexibility of model specification in the Bayesian framework. Suggestions for further reading are also provided.

stat.AP↗

arXiv2016

Statistical methods for linguistic research: Foundational Ideas - Part I

We present the fundamental ideas underlying statistical hypothesis testing using the frequentist framework. We begin with a simple example that builds up the one-sample t-test from the beginning, explaining important concepts such as the sampling distribution of the sample mean, and the iid assumption. Then we examine the p-value in detail, and discuss several important misconceptions about what a p-value does and does not tell us. This leads to a discussion of Type I, II error and power, and Type S and M error. An important conclusion from this discussion is that one should aim to carry out appropriately powered studies. Next, we discuss two common issues we have encountered in psycholinguistics and linguistics: running experiments until significance is reached, and the "garden-of-forking-paths" problem discussed by Gelman and others, whereby the researcher attempts to find statistical significance by analyzing the data in different ways. The best way to use frequentist methods is to run appropriately powered studies, check model assumptions, clearly separate exploratory data analysis from confirmatory hypothesis testing, and always attempt to replicate results.

stat.AP↗