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C Mark Maupin

Publications and source records attributed to C Mark Maupin.

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Finch: Toxicity Dose Response Curve Prediction of Chemical Compounds and Mixtures

A holistic approach to chemical mixtures is reshaping risk assessment emphasizing mixture testing over single compounds eliminating animal testing and advancing modeling methods. Most computational models still focus on individual chemicals and conventional mixture models like concentration addition and independent action are limited they struggle with multiple Modes of Action and often miss synergistic or antagonistic effects. Regulatory agencies need faster more efficient models that go beyond these constraints. Finch addresses these challenges with a novel workflow. It integrates molecular descriptor based frameworks and deep learning embeddings in multi task quantitative structure activity relationship models for improved chemical exposure prediction. DL embeddings preserve information from diverse inputs molecular descriptors physicochemical properties and large language model embeddings from SMILES by distilling key features into a latent space enhancing machine learning predictions. Finch multi task learning optimizes multiple loss functions simultaneously leveraging all available data to learn generalized representations. This enables effective modeling of complex ingredient interactions within mixtures offering a significant advancement for regulatory safety assessment.

q-bio.QM

FragNet: A Graph Neural Network for Molecular Property Prediction with Four Levels of Interpretability

Molecular property prediction is essential in a variety of contemporary scientific fields, such as drug development and designing energy storage materials. Although there are many machine learning models available for this purpose, those that achieve high accuracy while also offering interpretability of predictions are uncommon. We present a graph neural network that not only matches the prediction accuracies of leading models but also provides insights on four levels of molecular substructures. This model helps identify which atoms, bonds, molecular fragments, and connections between fragments are significant for predicting a specific molecular property. Understanding the importance of connections between fragments is particularly valuable for molecules with substructures that do not connect through standard bonds. The model additionally can quantify the impact of specific fragments on the prediction, allowing the identification of fragments that may improve or degrade a property value. These interpretable features are essential for deriving scientific insights from the model's learned relationships between molecular structures and properties.

cs.LG