arXiv subjects

C. Sabater

Publications and source records attributed to C. Sabater.

17 recordsLinked to original sources

arXiv2026

ANT:UI: An interactive 3D tool for preparing ANT.Gaussian molecular junction geometries

ANT.UI is a Python graphical interface that automates the construction of molecular-junction geometries for NEGF-DFT quantum transport calculations. Through a real-time 3D viewer, users interactively position electrodes and molecules and generate complete, ready-to-run input files for Gaussian and ANT.Gaussian without manual scripting. Dedicated Pull, Grid, and Rotation assistants further automate electrode-pulling sequences, surface scans, and step-wise rotation studies, with optional geometry-optimisation chaining across each sequence. By replacing a process that previously demanded days of custom scripting with a point-and-click workflow, ANT.UI accelerates research in theoretical molecular electronics and lowers the barrier to entry for new users. The software also exports all constructed geometries in standard XYZ format, allowing direct reuse in molecular dynamics codes or third-party visualization tools without manual reformatting.

cond-mat.mes-hall↗

arXiv2026

Quantum Transport and Apparent Work Function Distributions of Atomic Contacts via a 3D-Printed High-Vacuum Platform

We present a low-cost, 3D-printed high-vacuum platform integrating a mechanically controllable break-junction system and a custom logarithmic amplifier for room-temperature quantum transport measurements. Using copper as a highly reactive test case, we successfully resolve the $1G_0$ conductance quantum under both high vacuum and anhydrous glycerol, demonstrating the effectiveness of these environments against rapid atmospheric oxidation. In parallel, utilizing gold as a robust benchmark, we systematically extract the apparent work function ($\phi$) from thousands of tunneling traces across ambient air, vacuum, and glycerol. Our analysis demonstrates that the statistical distribution of $\phi$ rigorously follows a non-central chi-square distribution. The obtained gold work functions match existing literature across all environments. Although lower than bulk values, they perfectly align with theoretical models accounting for atomic-scale roughness, apex geometry, and environmental adsorbates. Ultimately, this methodology establishes an accessible and reproducible framework for systematic nanoscale research on reactive materials.

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arXiv2026

Benchmarking Current-to-Voltage Amplifiers for Quantum Transport Measurements

Accurate electrical amplification is essential in molecular electronics for measuring conductance through atomic and molecular junctions, where currents often span several orders of magnitude. In this work, we present a systematic design and comparative analysis of four current-to-voltage ($I\text{--}V$) amplifier architectures: single-stage linear, series-linear, logarithmic, and multi-stage cascaded, specifically optimized for break junction (BJ) techniques, including scanning tunneling microscopy (STM-BJ) and mechanically controllable break junctions (MCBJ). Each configuration is evaluated based on sensitivity, noise performance, and dynamic range. Our results characterize the trade-offs between circuit complexity and noise, providing a robust framework and practical guidelines for selecting amplification schemes in quantum transport experiments.

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arXiv2025

Measurement of the Quantum Capacitance Between Two Metallic Electrodes

Two factors contribute to the electrical capacitance between two electrodes: a classical contribution, stemming from the electric field, and a quantum contribution, governed by the Pauli exclusion principle, which increases the difficulty of adding charge to the electrodes. In metals, the high electronic Density of States (DOS) at the Fermi energy allows the quantum contribution to be neglected, and a classical description of the electrical capacitance between two metallic electrodes is normally used. Here, we study the evolution of the capacitance as two metallic electrodes (Pt or Au) are approached to the limit when quantum corrections are needed, before contact formation. At small distances, we observe that the classical increase in capacitance turns into saturation as the electrodes are approached, reaching the quantum capacitance limit. Finally, a capacitance leakage due to quantum tunneling is observed. Since the quantum capacitance depends on the electronic DOS on the surface of the electrodes, we use it to probe the DOS change induced by molecular adsorption (Toluene) on the metallic surface.

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arXiv2025

Exploring Three-Atom-Thick Gold Structures as a Benchmark for Atomic-Scale Calibration of Break-Junction Systems

We present an in-depth study of electronic transport in atomic-sized gold contacts using Break-Junction (BJ) techniques under cryogenic and ambient conditions. Our experimental results, supported by classical molecular dynamics (CMD) simulations and ab initio calculations, provide compelling evidence for the formation of three-atom-thick structures in gold nanocontacts under tensile stress. These findings extend previous studies that confirmed the existence of one- and two-atom-thick chains. Beyond identifying these novel atomic configurations, we introduce a fast and robust calibration method for Break-Junction systems, leveraging the characteristic length of these structures to convert piezo displacement into absolute distance in angstroms. Our approach presents a novel and robust method for calibrating atomic distances in atomic conductor systems at both cryogenic and room temperatures. The results also enable the assessment of electrode sharpness, even at room conditions.

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arXiv2023

Evidence of an Off-resonant Electronic Transport Mechanism in Helicenes

Helical molecules have been identified as potential candidates for investigating electronic transport, spin filtering, or even piezoelectricity. However, the description of the transport mechanism is not straightforward in single molecular junctions. In this work, we study the electronic transport in break junctions of a series of three helical molecules: dithia[$n$]helicenes, with $n=7, 9, 11$ molecular units, and detail the synthesis of two kinds of dithia[11]helicenes, varying the location of the sulfur atoms. Our experimental study demonstrates low conductance values that remain similar across different biases and molecules. Additionally, we assess the length dependence of the conductance for each helicene, revealing an exponential decay characteristic of off-resonant transport. This behaviour is primarily attributed to the misalignment between the energy levels of the molecule-electrodes system. The length dependence trend described above is supported by \textit{ab initio} calculations, further confirming the off-resonant transport mechanism.

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arXiv2023

Unraveling the Interplay between Quantum Transport and Geometrical Conformations in Monocyclic Hydrocarbons Molecular Junctions

In the field of molecular electronics, particularly in quantum transport studies, the orientation of molecules plays a crucial role. This orientation, with respect to the electrodes, can be defined through the cavity of ring-shaped monocyclic hydrocarbon molecules. In this manuscript, we unveil the geometrical conformation of these molecules when they are trapped between two atomically sharp electrodes through a combination of dynamic simulations, electronic transport calculations based on density functional theory, and break junction experiments under room conditions. Moreover, we present a novel criterion for determining the molecular orientation of benzene, toluene, (aromatic) and cyclohexane (aliphatic) solvents. Our findings for the identification of the molecular orientations on gold metal nanocontacts and their associated transport properties, can improve the understanding of molecular electronics using more complex cyclic hydrocarbons.

cond-mat.mtrl-sci↗

arXiv2022

A group-theoretic approach to the origin of chirality-induced spin selectivity in non-magnetic molecular junctions

Spin-orbit coupling gives rise to a range of spin-charge interconversion phenomena in non-magnetic systems where certain spatial symmetries are reduced or absent. Chirality-induced spin selectivity (CISS), a term that generically refers to a spin-dependent electron transfer in non-magnetic chiral systems, is one such case, appearing in a variety of seemingly unrelated situations ranging from inorganic materials to molecular devices. In particular, the origin of CISS in molecular junctions is a matter of an intense current debate. Here we derive a set of geometrical conditions for this effect to appear, hinting at the fundamental role of symmetries beyond otherwise relevant quantitative issues. Our approach, which draws on the use of point-group symmetries within the scattering formalism for transport, shows that electrode symmetries are as important as those of the molecule when it comes to the emergence of a spin-polarization and, by extension, to the possible appearance of CISS. It turns out that standalone metallic nanocontacts can exhibit spin-polarization when relative rotations which reduce the symmetry are introduced. As a corollary, molecular junctions with $\textbf{achiral}$ molecules can also exhibit spin-polarization along the direction of transport, provided that the whole junction is chiral in a specific way. This formalism also allows the prediction of qualitative changes of the spin-polarization upon substitution of a chiral molecule in the junction with its enantiomeric partner. Quantum transport calculations based on density functional theory corroborate all of our predictions and provide further quantitative insight within the single-particle framework.

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arXiv2022

Simulation of the Einstein-de Haas effect combining molecular and spin dynamics

The spin and lattice dynamics of a ferromagnetic nanoparticle are studied via molecular dynamics and with semi-classical spin dynamics simulations where spin and lattice degrees of freedom are coupled via a dynamic uniaxial anisotropy term. We show that this model conserves total angular momentum, whereas spin and lattice angular momentum are not conserved. We carry out simulations of the the Einstein-de Haas effect for a Fe nanocluster with more than 500 atoms that is free to rotate, using a modified version of the open-source spinlattice dynamics code (SPILADY). We show that the rate of angular momentum transfer between spin and lattice is proportional to the strength of the magnetic anisotropy interaction. The addition of the anisotropy allows full spin-lattice relaxation to be achieved on previously reported timescales of \sim 100 ps and for tight-binding magnetic anisotropy energies comparable to those of small Fe nanoclusters.

cond-mat.mtrl-sci↗

arXiv2022

Dynamic bonding influenced by the proximity of adatoms to one-atom high step edges

Low-temperature scanning tunneling microscopy is used here to study dynamic bonding of gold atoms on surfaces under low coordination conditions. In the experiments, using an atomically-sharp gold tip, a gold adatom is deposited onto a gold surface with atomic precision either on the first hollow site near a step edge, or far away from it. Classical molecular dynamics simulations at 4.2 K and density functional theory calculations serve to elucidate the difference in the bonding behavior between these two different placements, while also providing information on the crystalline classification of the STM tips based on their experimental performance.

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arXiv2019

Directional bonding explains high conductance values of atomic contacts in bcc metals

Atomic-sized junctions of iron, created by controlled rupture, present unusually high values of conductance compared to other metals. This result is counter-intuitive since, at the nanoscale, body-centered cubic metals are expected to exhibit lower coordination than face-centered cubic metals. In this work, classical molecular dynamics simulations of contact rupture, using an interatomic potential that accounts for directional bonding, yield highly-coordinated stable structures before rupture, unlike an isotropic bonding potential, which results in the expected stable single-atom contacts. Density functional theory electronic transport calculations show that conductance values of these highly coordinated and highly stable structures, can explain the experimentally measured values for conductance of body-centered cubic atomic contacts, thus revealing the important role of directional bonding in these metals.

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arXiv2017

The role of first neighbors geometry in the electronic and mechanical properties of atomic contacts

We study in detail, by experimental measurements, atomistic simulations and DFT transport calculations, the process of formation and the resulting electronic properties of atomic-sized contacts made of Au, Ag and Cu. Our novel approaches to the data analysis of both experimental results and simulations, lead to a precise relationship between geometry and electronic transmission. We reestablish the significant influence of the number of first neighbors on the electronic properties of atomic-sized contacts. Our results allow us also to interpret subtle differences between the metals during the process of contact formation as well as the characteristics of the resulting contacts.

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arXiv2017

Influence of relativistic effects on the contact formation of transition metals

Our analysis of the contact formation processes undergone by Au, Ag and Cu nanojunctions, reveals that the distance at which the two closest atoms on a pair of opposing electrodes jump into contact is, on average, two times longer for Au than either Ag or Cu. This suggests the existence of a longer range interaction between those two atoms in the case of Au, a result of the significant relativistic energy contributions to the electronic structure of this metal, as confirmed by ab initio calculations. Once in the contact regime, the differences between Au, Ag and Cu are subtle, and the conductance of single-atom contacts for metals of similar chemical valence is mostly determined by geometry and coordination.

cond-mat.mes-hall↗

arXiv2015

Modeling contact formation between atomic-sized gold tips via molecular dynamics

The formation and rupture of atomic-sized contacts is modelled by means of molecular dynamics simulations. Such nano-contacts are realized in scanning tunnelling microscope and mechanically controlled break junction experiments. These instruments routinely measure the conductance across the nano-sized electrodes as they are brought into contact and separated, permitting conductance traces to be recorded that are plots of conductance versus the distance between the electrodes. One interesting feature of the conductance traces is that for some metals and geometric configurations a jump in the value of the conductance is observed right before contact between the electrodes, a phenomenon known as jump-to-contact. This paper considers, from a computational point of view, the dynamics of contact between two gold nano-electrodes. Repeated indentation of the two surfaces on each other is performed in two crystallographic orientations of face-centred cubic gold, namely (001) and (111). Ultimately, the intention is to identify the structures at the atomic level at the moment of first contact between the surfaces, since the value of the conductance is related to the minimum cross-section in the contact region. Conductance values obtained in this way are determined using first principles electronic transport calculations, with atomic configurations taken from the molecular dynamics simulations serving as input structures.

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arXiv2013

Understanding the structure of the first atomic contact in Gold

We have studied experimentally the phenomena of jump-to-contact (JC) and jump-out-of-contact (JOC) in gold electrodes. JC can be observed at the first contact when the two metals approach each other while JOC occurs in the last contact before breaking. When the indentation depth between the electrodes is limited to a certain value of conductance, a highly reproducible behaviour in the evolution of the conductance can be obtained for hundreds of cycles of formation and rupture. Molecular dynamics simulations of this process show how the two metallic electrodes are shaped into tips of a well-defined crystallographic structure formed through a mechanical annealing mechanism. We report a detailed analysis of the atomic configurations obtained before contact and rupture of these stable structures and obtained their conductance using first-principlesquantum transport calculations. These results help us understand the values of conductance obtained experimentally in the JC and JOC phenomena and improve our understanding of atomic-sized contacts and the evolution of their structural characteristics.

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arXiv2013

Topologically protected quantum transport in locally exfoliated bismuth at room temperature

We report electrical conductance measurements of Bi nanocontacts created by repeated tip-surface indentation using a scanning tunneling microscope at temperatures of 4 K and 300 K. As a function of the elongation of the nanocontact we measure robust, tens of nanometers long plateaus of conductance G0 = 2e^2/h at room temperature. This observation can be accounted for by the mechanical exfoliation of a Bi(111) bilayer, a predicted QSH insulator, in the retracing process following a tip-surface contact. The formation of the bilayer is further supported by the additional observation of conductance steps below G0 before break-up at both temperatures. Our finding provides the first experimental evidence of the possibility of mechanical exfoliation of Bi bilayers, of the existence of the QSH phase in a two-dimensional crystal, and, most importantly, of the observation of the QSH phase at room temperature.

cond-mat.mes-hall↗

arXiv2012

Mechanical annealing of metallic electrodes at the atomic scale

The process of creating an atomically defined and robust metallic tip is described and quantified using measurements of contact conductance between gold electrodes and numerical simulations. Our experiments show how the same conductance behavior can be obtained for hundreds of cycles of formation and rupture of the nanocontact by limiting the indentation depth between the two electrodes up to a conductance value of approximately $5G_{0}$ in the case of gold. This phenomenon is rationalized using molecular dynamics simulations together with density functional theory transport calculations which show how, after repeated indentations (mechanical annealing), the two metallic electrodes are shaped into tips of reproducible structure. These results provide a crucial insight into fundamental aspects relevant to nano-tribology or scanning probe microscopies.

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